View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5070_low_12 (Length: 265)
Name: NF5070_low_12
Description: NF5070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5070_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 16 - 220
Target Start/End: Complemental strand, 1730424 - 1730220
Alignment:
| Q |
16 |
atcatcatcatatgttggtagtttaactctttcctttttggcagcaaacaaatttgctttctttgcatttgaatccgaggaagtcaccgccttcaccttg |
115 |
Q |
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| T |
1730424 |
atcatcatcatatgttggtagtttaactctttcctttttggcagcaaacaaatttgctttctttgcatttgaatccgaggaagtcaccgccttcaccttg |
1730325 |
T |
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| Q |
116 |
atgtccattttcttactaaaataaatgaatcaaatttatgaacaaaagcaacaactcatagaaaagatcaaagttcacaaaatttgagacctacaatcca |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
1730324 |
atgtccattttcttactaaaataaatgaatcaaatttatgaacaaaagtaacaactcatagaaaagatcaaagttcacaagatttgagacctacaatcca |
1730225 |
T |
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| Q |
216 |
acagg |
220 |
Q |
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||||| |
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| T |
1730224 |
acagg |
1730220 |
T |
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