View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5070_low_16 (Length: 238)
Name: NF5070_low_16
Description: NF5070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5070_low_16 |
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| [»] scaffold0118 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 13715891 - 13716109
Alignment:
| Q |
1 |
aatctgccattgttggtgcacaatgtaatatgacaccttcatgttcagctaagcatgcaaatgagtaggaatgcttagagactgcaccaatggctcaccg |
100 |
Q |
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| T |
13715891 |
aatctgccattgttggtgcacgatgtaatatgacaccttcatgttcagctaagcatgcaaatgagtaggaatgcttagagacttcaccaatggctcaccg |
13715990 |
T |
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| Q |
101 |
ggccacatgtccttccaaaagagaacattctccacattccctatgttccaattagaattattcaacacaggctgaacaaaaggcttaagccgaagccaaa |
200 |
Q |
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| T |
13715991 |
ggccacatgtgcttccaaaagagaacattctccacattccctatgttccaattagaattattcaacacaggctgaacaaaaggcttaagccgaagccaaa |
13716090 |
T |
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| Q |
201 |
tggaagaagcaatatgatg |
219 |
Q |
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| T |
13716091 |
tggaagaagcaatatgatg |
13716109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0118 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: scaffold0118
Description:
Target: scaffold0118; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 36159 - 36379
Alignment:
| Q |
1 |
aatctgccattgttggtgcacaatgtaatatgacaccttcatgttcagctaagcatgcaaatgagtaggaatgcttagagactgcaccaatggctcaccg |
100 |
Q |
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|||| ||||||| ||||||| |||||||| |||||||||||||| ||||| |||||| ||||| | ||||||||| |||||||||||||| |||||||| |
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| T |
36159 |
aatccgccattgatggtgcagaatgtaatctgacaccttcatgtccagctgagcatgaaaatgtgaaggaatgctgagagactgcaccaacggctcaccc |
36258 |
T |
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| Q |
101 |
ggccacatgtccttccaaaagagaacattctccacattccctatgttccaattagaattattcaacacaggctgaacaaaaggcttaagccgaagccaaa |
200 |
Q |
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| T |
36259 |
aaccacctgtccttccaaaagagaacattctccccattcccaatattccaagtagaattaactaacaccaactgcacaaaagacttaagccgaggccaaa |
36358 |
T |
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| Q |
201 |
tggaagaagcaatatgatgtt |
221 |
Q |
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| T |
36359 |
tcgaataagtagtatgatgtt |
36379 |
T |
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