View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5070_low_3 (Length: 479)
Name: NF5070_low_3
Description: NF5070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5070_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 185; Significance: 1e-100; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 7 - 207
Target Start/End: Original strand, 23222574 - 23222774
Alignment:
| Q |
7 |
gatgcaaggtcacttacgtgctttacgattccagaagtgccttgctgttgccaattttattgaaaagagaagcataaatagcaaagatagattcaagata |
106 |
Q |
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| T |
23222574 |
gatgcaaggtcacttacgtgctttacgattccagaagtgccttgctgttgccaattttattgaaaagagaagcataaatagcaaagatagattcaagata |
23222673 |
T |
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| Q |
107 |
acctttttaaaataagccatctttaaccaaaaattgtagaagctagagcatatattcgtgaagtgtgtccggaatggatgtaaatatatatagatctagc |
206 |
Q |
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| T |
23222674 |
acctttttaaaataagccatctttaaccaaaaattgtagaagctagagcatatattcgtgaagtgtgtttggaatggatggaaatatatatagacctagc |
23222773 |
T |
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| Q |
207 |
t |
207 |
Q |
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| |
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| T |
23222774 |
t |
23222774 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 339 - 424
Target Start/End: Complemental strand, 9325541 - 9325456
Alignment:
| Q |
339 |
tttcatctcgtacaaggagtgcaaagagaaacacccaacacaattacaatgtcaaatcgtcagtgccataaaataaaacactgcaa |
424 |
Q |
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| T |
9325541 |
tttcatctcgcacaaggcgtgcaaagagaaacaccaaaagcacttacaaagtcaagtcattggtgccaaaaaatagaacactgcaa |
9325456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 275 - 311
Target Start/End: Original strand, 23222922 - 23222958
Alignment:
| Q |
275 |
gtggttggggtttgattttgataatttaaatgatata |
311 |
Q |
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| T |
23222922 |
gtggttggggcttgattttgataatttaaaagatata |
23222958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 341 - 445
Target Start/End: Original strand, 8161757 - 8161861
Alignment:
| Q |
341 |
tcatctcgtacaaggagtgcaaagagaaacacccaacacaattacaatgtcaaatcgtcagtgccataaaataaaacactgcaacaaagtaacctgaagt |
440 |
Q |
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|||||||||||||| || ||||||||||||||||| | ||||||||||||| || ||||||||||||||| ||||| ||||| |||||| ||||| |
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| T |
8161757 |
tcatctcgtacaagacgtacaaagagaaacacccaaagcgattacaatgtcaagtcaccagtgccataaaatagaacaccgcaacgaagtaaattgaaga |
8161856 |
T |
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| Q |
441 |
aataa |
445 |
Q |
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||||| |
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| T |
8161857 |
aataa |
8161861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 339 - 411
Target Start/End: Complemental strand, 6081704 - 6081632
Alignment:
| Q |
339 |
tttcatctcgtacaaggagtgcaaagagaaacacccaacacaattacaatgtcaaatcgtcagtgccataaaa |
411 |
Q |
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|||||||| ||||||| ||| ||||| ||||| |||| |||||||||||||||| || | ||||||||||| |
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| T |
6081704 |
tttcatcttgtacaagacgtgtaaagaaaaacatccaaaacaattacaatgtcaagtcaccggtgccataaaa |
6081632 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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