View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5070_low_6 (Length: 400)

Name: NF5070_low_6
Description: NF5070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5070_low_6
NF5070_low_6
[»] chr3 (13 HSPs)
chr3 (26-294)||(23459039-23459304)
chr3 (295-387)||(23389223-23389314)
chr3 (155-288)||(23367815-23367952)
chr3 (35-113)||(23501789-23501868)
chr3 (248-294)||(23407236-23407282)
chr3 (248-294)||(23465892-23465938)
chr3 (35-118)||(23369371-23369455)
chr3 (248-294)||(23389499-23389545)
chr3 (255-294)||(23481887-23481926)
chr3 (154-200)||(23407306-23407352)
chr3 (251-288)||(23360975-23361012)
chr3 (69-118)||(23368016-23368065)
chr3 (154-203)||(23501671-23501720)
[»] scaffold0201 (2 HSPs)
scaffold0201 (43-144)||(17433-17534)
scaffold0201 (228-290)||(16237-16295)
[»] scaffold0570 (2 HSPs)
scaffold0570 (35-113)||(859-936)
scaffold0570 (255-294)||(8643-8682)
[»] scaffold0022 (1 HSPs)
scaffold0022 (161-288)||(166955-167086)


Alignment Details
Target: chr3 (Bit Score: 177; Significance: 3e-95; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 26 - 294
Target Start/End: Complemental strand, 23459304 - 23459039
Alignment:
Q  26 tgaacaggtataatctgaaaaatgattcaaaattgaaggacgccaagcttaattttgcatatattttaatctgaaatccaattccatagtttatctagta 125  Q
    |||| |||||||||||||||||||| |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23459304 tgaataggtataatctgaaaaatgactcaaaattgaaggacaacaagcttaattttgcatatattttaatctgaaatccaattccatagtttatctagta 23459205  T
Q  126 gtctccgtcaaaaagcaagcaagcgaagccacacctgttattttatattttaaatttgacacattacatgtatatacatcaggaccaaagcattagaaag 225  Q
    |||||| |||||||| |||||||| ||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||  |||    
T  23459204 gtctccatcaaaaaggaagcaagctaagccacacttgttattttatattttaaatttgacccattacatgtatatacatcaggaccaaggcattatgaag 23459105  T
Q  226 tg-ttgtgtgtgctcatccttagttaattaattttcatcgaaaattgattccagcagaagctaagccata 294  Q
    || ||||||||| | ||||    |||||||||||||||| ||| ||||||||| ||||||||||||||||    
T  23459104 tgtttgtgtgtgtttatcc----ttaattaattttcatccaaatttgattccaccagaagctaagccata 23459039  T

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Target: chr3; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 295 - 387
Target Start/End: Complemental strand, 23389314 - 23389223
Alignment:
Q  295 atatttgttaattaaaactcaacatgttttccaggaattaaagtttgactaaattgaccgacagtttataatatccaaatgaaatatgaatat 387  Q
    |||||||||||||||||||||| |||||| |||| |||| ||||||||| ||||||| |||||||||| |||||||||||| |||||||||||    
T  23389314 atatttgttaattaaaactcaaaatgtttcccagaaattgaagtttgacaaaattgatcgacagtttacaatatccaaatg-aatatgaatat 23389223  T

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Target: chr3; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 155 - 288
Target Start/End: Complemental strand, 23367952 - 23367815
Alignment:
Q  155 cacacctgttattttatattttaaatttgacacattacatgtat---atacatcaggacc----aaagcattagaaagtg-ttgtgtgtgctcatcctta 246  Q
    ||||| |||||||||||||||||| |||||| ||||||||||||   ||||| || ||||    |||||||||  ||||| ||||||||| ||||||       
T  23367952 cacacttgttattttatattttaattttgacccattacatgtatataatacaccacgaccaacgaaagcattatgaagtgtttgtgtgtgttcatcc--- 23367856  T
Q  247 gttaattaattttcatcgaaaattgattccagcagaagctaa 288  Q
     |||||||||||||||  ||||||||||||||||||||||||    
T  23367855 -ttaattaattttcattcaaaattgattccagcagaagctaa 23367815  T

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Target: chr3; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 35 - 113
Target Start/End: Complemental strand, 23501868 - 23501789
Alignment:
Q  35 ataatctgaaaaa-tgattcaaaattgaaggacgccaagcttaattttgcatatattttaatctgaaatccaattccata 113  Q
    ||||||||||||| ||  ||||||||||| |||  ||||| ||||||||||||||||||||||||||||||| |||||||    
T  23501868 ataatctgaaaaaatgtgtcaaaattgaacgacaacaagcataattttgcatatattttaatctgaaatccatttccata 23501789  T

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Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 248 - 294
Target Start/End: Complemental strand, 23407282 - 23407236
Alignment:
Q  248 ttaattaattttcatcgaaaattgattccagcagaagctaagccata 294  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||    
T  23407282 ttaattaattttcatccaaaattgattccagcagaagctaagccata 23407236  T

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Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 248 - 294
Target Start/End: Complemental strand, 23465938 - 23465892
Alignment:
Q  248 ttaattaattttcatcgaaaattgattccagcagaagctaagccata 294  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||    
T  23465938 ttaattaattttcatctaaaattgattccagcagaagctaagccata 23465892  T

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Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 35 - 118
Target Start/End: Complemental strand, 23369455 - 23369371
Alignment:
Q  35 ataatctgaaaaatgattcaaaattgaaggacgccaagctta-attttgcatatattttaatctgaaatccaattccatagttta 118  Q
    |||||||||||||||||||||||||||| |||  ||||| ||  |||||||||||||||||||| |||| || ||||||| ||||    
T  23369455 ataatctgaaaaatgattcaaaattgaacgacaacaagcatattttttgcatatattttaatctaaaatgcatttccatatttta 23369371  T

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Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 248 - 294
Target Start/End: Complemental strand, 23389545 - 23389499
Alignment:
Q  248 ttaattaattttcatcgaaaattgattccagcagaagctaagccata 294  Q
    |||||||||||||||| |||||||||||||| | |||||||||||||    
T  23389545 ttaattaattttcatccaaaattgattccaggaaaagctaagccata 23389499  T

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Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 255 - 294
Target Start/End: Complemental strand, 23481926 - 23481887
Alignment:
Q  255 attttcatcgaaaattgattccagcagaagctaagccata 294  Q
    ||||| ||| ||||||||||||||||||||||||||||||    
T  23481926 attttgatccaaaattgattccagcagaagctaagccata 23481887  T

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Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 154 - 200
Target Start/End: Complemental strand, 23407352 - 23407306
Alignment:
Q  154 ccacacctgttattttatattttaaatttgacacattacatgtatat 200  Q
    |||||| |||||||||||||||||| |||||| |||||||| |||||    
T  23407352 ccacacttgttattttatattttaattttgacccattacatctatat 23407306  T

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Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 288
Target Start/End: Complemental strand, 23361012 - 23360975
Alignment:
Q  251 attaattttcatcgaaaattgattccagcagaagctaa 288  Q
    ||||||||||||  ||||||||||||||||||||||||    
T  23361012 attaattttcattcaaaattgattccagcagaagctaa 23360975  T

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Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 118
Target Start/End: Complemental strand, 23368065 - 23368016
Alignment:
Q  69 caagcttaattttgcatatattttaatctgaaatccaattccatagttta 118  Q
    ||||| || ||||||||||||||||||||||||| || ||||||| ||||    
T  23368065 caagcatatttttgcatatattttaatctgaaattcatttccatatttta 23368016  T

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Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 203
Target Start/End: Complemental strand, 23501720 - 23501671
Alignment:
Q  154 ccacacctgttattttatattttaaatttgacacattacatgtatataca 203  Q
    |||||| | |||||||||||||||| |||||| |||||||| ||||||||    
T  23501720 ccacacttattattttatattttaattttgacccattacatctatataca 23501671  T

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Target: scaffold0201 (Bit Score: 66; Significance: 5e-29; HSPs: 2)
Name: scaffold0201
Description:

Target: scaffold0201; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 43 - 144
Target Start/End: Complemental strand, 17534 - 17433
Alignment:
Q  43 aaaaatgattcaaaattgaaggacgccaagcttaattttgcatatattttaatctgaaatccaattccatagtttatctagtagtctccgtcaaaaagca 142  Q
    |||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||  | ||||||| ||||| ||||||||||| ||||||||||    
T  17534 aaaaatgattcaaaattgaaggataacaagcttaattttgcatatattttaatctgaaatgtatttccatattttatgtagtagtctccatcaaaaagca 17435  T
Q  143 ag 144  Q
    ||    
T  17434 ag 17433  T

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Target: scaffold0201; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 228 - 290
Target Start/End: Complemental strand, 16295 - 16237
Alignment:
Q  228 ttgtgtgtgctcatccttagttaattaattttcatcgaaaattgattccagcagaagctaagc 290  Q
    ||||||||||||||||     ||||||||||||||| ||||||||||||| ||||||||||||    
T  16295 ttgtgtgtgctcatcc----gtaattaattttcatccaaaattgattccaacagaagctaagc 16237  T

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Target: scaffold0570 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: scaffold0570
Description:

Target: scaffold0570; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 35 - 113
Target Start/End: Original strand, 859 - 936
Alignment:
Q  35 ataatctgaaaaatgattcaaaattgaaggacgccaagcttaattttgcatatattttaatctgaaatccaattccata 113  Q
    ||||||||||||||||||||||||| || |||  ||| ||  |||||||||||||||||||||||||| || |||||||    
T  859 ataatctgaaaaatgattcaaaattcaacgacaacaa-ctccattttgcatatattttaatctgaaattcatttccata 936  T

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Target: scaffold0570; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 255 - 294
Target Start/End: Original strand, 8643 - 8682
Alignment:
Q  255 attttcatcgaaaattgattccagcagaagctaagccata 294  Q
    ||||| ||| ||||||||||||||||||||||||||||||    
T  8643 attttgatccaaaattgattccagcagaagctaagccata 8682  T

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Target: scaffold0022 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 161 - 288
Target Start/End: Original strand, 166955 - 167086
Alignment:
Q  161 tgttattttatattttaaatttgacacattacatgtatatacatca-------ggaccaaagcattagaaagt-gttgtgtgtgctcatccttagttaat 252  Q
    |||||||||||||||||| |||||  ||||||||||| ||||||||         |||||||||||  |||||  ||||||||||||||||    |||||    
T  166955 tgttattttatattttaattttgatccattacatgtaaatacatcatcacgaccaaccaaagcattctaaagtatttgtgtgtgctcatcc----ttaat 167050  T
Q  253 taattttcatcgaaaattgattccagcagaagctaa 288  Q
    ||||||||||| ||||||||||| || | |||||||    
T  167051 taattttcatccaaaattgattctagtataagctaa 167086  T

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