View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5070_low_9 (Length: 344)
Name: NF5070_low_9
Description: NF5070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5070_low_9 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 1 - 344
Target Start/End: Complemental strand, 476602 - 476238
Alignment:
| Q |
1 |
aagagctacgagaaaagaacaaactagggaagtgtgctgaggttggtgaatctagaaattgact---------------------tatatctggccttat |
79 |
Q |
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| T |
476602 |
aagagctacgagaaaagaacaaactagggaagtgtgctgaggttggtgaatctagaaattgactgacttgttgcacaaggaatattatatctggccttat |
476503 |
T |
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| Q |
80 |
ggatgtcaaataacttgccagcaaaggctcaatatattcttcagtatcatcattgtgtaatccttgaataggatctattgggaaaactggatggcttgaa |
179 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
476502 |
ggatgtcaaataacttgccaacaaaggctcaatatattcttcagtatcatcattgtgtaatccttgaataggatctattgggaaaactggatggcttgaa |
476403 |
T |
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| Q |
180 |
gaccaagttatttgtcttagttaataaatatagaaaatactgtctttgacacaaagtgatatcttgttctgaatgtacagtttctgttcctaggaagaat |
279 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
476402 |
gaccaagttatttgtcttagttaataaatatagaaaatactgtctttgacacaaagtgatatcttgttctgaatgtacagtttctgttcctaggaagaat |
476303 |
T |
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| Q |
280 |
tttaaaaatcaaaagtccttgatctcaaaataatcttgaaattttcctttggttgcttcaaattc |
344 |
Q |
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|||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
476302 |
tttaaaaatccaaagtccttgatctcaaaatcatcttgaaattttcctttggttgcttcaaattc |
476238 |
T |
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