View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5071-Insertion-16 (Length: 291)

Name: NF5071-Insertion-16
Description: NF5071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5071-Insertion-16
NF5071-Insertion-16
[»] chr5 (1 HSPs)
chr5 (7-291)||(26511492-26511776)


Alignment Details
Target: chr5 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 7 - 291
Target Start/End: Original strand, 26511492 - 26511776
Alignment:
Q  7 agaaacaactagagacgtggatgtgatttgttttgttttgttgcatgttataagataatagaaatattgaaaaatctacatagcataaaaaagttgtggc 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26511492 agaaacaactagagacgtggatgtgatttgttttgttttgttgcatgttataagataatagaaatattgaaaaatctacatagcataaaaaagttgtggc 26511591  T
Q  107 tgcaaattctctacaaattttcatgtatcccccactcaaccaatcctcgtcatttgttctaatctctctctccttggacctttgtctcagtgtcactatt 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26511592 tgcaaattctctacaaattttcatgtatcccccactcaaccaatcctcgtcatttgttctaatctctctctccttggacctttgtctcagtgtcactatt 26511691  T
Q  207 ttctcattgcaacttgagtgnnnnnnnnnnnnncaaccaaatttagaatttcttggaaaacaaaactactcttaaagttatgcta 291  Q
    ||||||||||||||||||||             ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26511692 ttctcattgcaacttgagtgaaaaatcaaaaaacaaccaaatttagaatttcttggaaaacaaaactactcttaaagttatgcta 26511776  T

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