View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5071-Insertion-2 (Length: 881)

Name: NF5071-Insertion-2
Description: NF5071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5071-Insertion-2
NF5071-Insertion-2
[»] chr4 (2 HSPs)
chr4 (28-881)||(26841161-26842011)
chr4 (711-823)||(42476778-42476888)
[»] chr7 (4 HSPs)
chr7 (629-869)||(36066326-36066561)
chr7 (628-870)||(3533427-3533664)
chr7 (771-847)||(9568912-9568985)
chr7 (629-718)||(9569031-9569120)
[»] chr1 (3 HSPs)
chr1 (686-870)||(11016320-11016499)
chr1 (775-870)||(36683357-36683448)
chr1 (663-832)||(48014912-48015076)
[»] chr6 (4 HSPs)
chr6 (708-870)||(21060222-21060379)
chr6 (708-870)||(21079539-21079696)
chr6 (699-753)||(7650594-7650648)
chr6 (693-754)||(32144621-32144682)
[»] chr3 (2 HSPs)
chr3 (647-748)||(1604488-1604589)
chr3 (686-751)||(10505775-10505840)
[»] chr8 (1 HSPs)
chr8 (629-754)||(43820370-43820491)
[»] chr5 (1 HSPs)
chr5 (699-749)||(30064562-30064612)


Alignment Details
Target: chr4 (Bit Score: 638; Significance: 0; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 638; E-Value: 0
Query Start/End: Original strand, 28 - 881
Target Start/End: Original strand, 26841161 - 26842011
Alignment:
Q  28 gtaacccaataattgaaaagccaagtatgtcagccacatcaagaattgagtggattatcatatcattggaaaatatgaaagtattagaacttactgacat 127  Q
    |||| |||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||    
T  26841161 gtaaaccaataattgaaaagccaagtatggcagccacatcaagaattgagtgtattatcatatcattggaaaatatgaaagtattagaacttacagacat 26841260  T
Q  128 gtaggtgaggaaaccgtataaacgttcaatgttgaacatcatatctaccttcaacattatgatcatgtggcagatgcccctgaacacttccaatcttgct 227  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||    
T  26841261 gtaggtgaggaaaccgtataaacgttcaatgttgaacgtcatatctaccttcaacaacatgatcatgtggcagatgcccctgaacacttccaatcttgct 26841360  T
Q  228 ccttagcaacttcttttgtggcaagtagtctaaagttggacgagtatgtgttctaaattcgttcgacttcatctcaacaacgagccaatcgcaagcaagg 327  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  26841361 ccttagcaacttcttttgtggcaagtagtctgaagttggacgagtatgtgttctaaattcgttcgacttcatctcaacagcgagccaatcgcaagcaagg 26841460  T
Q  328 agaagtttatatccagcgaatccatatggaacattttagaagtcacaatggttgtgcaagggagaatggtaatatgatcttgaataaggcggtgagaccc 427  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||    
T  26841461 agaagtttatatccaacgaatccatatggaacattttagaagtcacaatggttgtgcaagggagaatggtaatatgatcttgaataaggcggagagcccc 26841560  T
Q  428 tagataattcacttcaacatttcccttgcattggtcaagagtttgtgaatcagaagaagtcattctcaaatgttagggttttgataatnnnnnnnngtac 527  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||    
T  26841561 tagatagttcacttcaacatttcccttgcattggtcaagagtttgtgaatcagaagaagtcattctcaaatgttagggttttgataataaaaaaaagtac 26841660  T
Q  528 tcaacaacggacaagaatatcgagaaaatattttttagaaaagtggcgcaaaaatacgacaaagnnnnnnngagtaaagagtggagcaa-annnnnnnnc 626  Q
    |||||| ||||||||||||||||||||||  |||||||||||||||||||||||||||| | ||       ||| ||||||||||||||          |    
T  26841661 tcaacagcggacaagaatatcgagaaaatgctttttagaaaagtggcgcaaaaatacgatagagaaaaaaagagcaaagagtggagcaattttttttttc 26841760  T
Q  627 ttgggtgggccaccaaagtaaactacgatatacagaacaaaattaatgttgttgttaatattaaacataaagttgagcatcaaaaaattaaactacatat 726  Q
    ||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  26841761 ttgggtgggccaccaaagtaaactatgatatatagaacaaaattaatgttgttgttaatattaaacataaagttgagcat-aaaaaattaaactacatat 26841859  T
Q  727 gttaaaattttaaaataattctctacgcttttccaaatgactagaaatcatataaaatagaatcaaaattaataacttacactaacttctctttcaatat 826  Q
    ||||||| |||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  26841860 gttaaaaatttaaaataattctctgcgctttttcaaatgactagaaatcatataaaatagaatcaaaattaat-acttacactaacttctctttcaatat 26841958  T
Q  827 aaattgtctatgatattattttagaattaatgtctcaaaattaaatgtatcatac 881  Q
    ||||||||  |||||||| ||||||||||||||||||||||| ||||||||||||    
T  26841959 aaattgtccgtgatatta-tttagaattaatgtctcaaaatt-aatgtatcatac 26842011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 711 - 823
Target Start/End: Original strand, 42476778 - 42476888
Alignment:
Q  711 aaattaaactacatatgttaaaattttaaaataattctctacgcttttccaaatgactagaaatcatataaaatagaatcaaaattaataacttacacta 810  Q
    ||||||||| |||||| || ||| ||||||||||||||||||||  |||||||  ||| |||| ||||||||||||||||||||||||| ||||||| ||    
T  42476778 aaattaaacaacatatatttaaaatttaaaataattctctacgc-attccaaaatacttgaaaacatataaaatagaatcaaaattaat-acttacatta 42476875  T
Q  811 acttctctttcaa 823  Q
    ||||||| |||||    
T  42476876 acttctcattcaa 42476888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 90; Significance: 5e-43; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 90; E-Value: 5e-43
Query Start/End: Original strand, 629 - 869
Target Start/End: Original strand, 36066326 - 36066561
Alignment:
Q  629 gggtgggccaccaaagtaaactacgatatacagaacaaaattaatgttgttgttaatattaaacataaagttgagcatcaaaaaattaaactacatatgt 728  Q
    ||||||||||||||| ||||||| |||||| | |||||||||  |||||| ||    |||||||||||||||||  ||||||| ||| ||| |||| | |    
T  36066326 gggtgggccaccaaaataaactatgatatataaaacaaaatttgtgttgtagtgtgcattaaacataaagttgaaaatcaaaacatttaacaacatttat 36066425  T
Q  729 taaaattttaaaataattctctacgcttttccaaatgactagaaatcatataaaatagaatcaaaattaataacttacactaacttctctttcaatataa 828  Q
    | ||| ||||||||||||||||| ||  |||||||  ||| ||||||||||||||||||||||||| |||| |||||||||| |||||||||||||||||    
T  36066426 tgaaaatttaaaataattctctatgc-attccaaaatacttgaaatcatataaaatagaatcaaaactaat-acttacactaccttctctttcaatataa 36066523  T
Q  829 attgtctatgatattattttagaattaatgtctcaaaatta 869  Q
    |||||| ||| |||   ||||||||||||||||||||||||    
T  36066524 attgtc-atgctat--atttagaattaatgtctcaaaatta 36066561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 628 - 870
Target Start/End: Complemental strand, 3533664 - 3533427
Alignment:
Q  628 tgggtgggccaccaaagtaaactacgatatacagaacaaaattaatgttgttgttaatattaaacataaagttgagcatcaaaaaattaaactacatatg 727  Q
    ||||||||||| |||| | ||||| |||||| | | ||||||| ||||||  ||    ||||||||||||| | |  |||||||||||| || ||||||     
T  3533664 tgggtgggccatcaaaatgaactatgatatataaagcaaaatttatgttgcagtgtgcattaaacataaagattaaaatcaaaaaattagacaacatata 3533565  T
Q  728 ttaaaattttaaaataattctctacgcttttccaaatgactagaaatcatataaaatagaatcaaaattaataacttacactaacttctctttcaatata 827  Q
    ||| || ||||||||| || | ||||| || | |||| ||| ||||||| |||||||| |||||||| ||||| |||| |||||||||||||||||||||    
T  3533564 ttataaatttaaaatacttttttacgcattccaaaat-acttgaaatcacataaaatataatcaaaactaata-cttatactaacttctctttcaatata 3533467  T
Q  828 aattgtctatgatattattttagaattaatgtctcaaaattaa 870  Q
    ||||||| ||| |||   |||||||||||||||||||||||||    
T  3533466 aattgtc-atgctat--atttagaattaatgtctcaaaattaa 3533427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 771 - 847
Target Start/End: Complemental strand, 9568985 - 9568912
Alignment:
Q  771 aaatcatataaaatagaatcaaaattaataacttacactaacttctctttcaatataaattgtctatgatattattt 847  Q
    |||| |||||||||||||||||||||||| ||||||| |||||||||||||||||||| |||| | |||||||||||    
T  9568985 aaattatataaaatagaatcaaaattaat-acttaca-taacttctctttcaatataagttgt-tgtgatattattt 9568912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 629 - 718
Target Start/End: Complemental strand, 9569120 - 9569031
Alignment:
Q  629 gggtgggccaccaaagtaaactacgatatacagaacaaaattaatgttgttgttaatattaaacataaagttgagcatcaaaaaattaaa 718  Q
    ||||||||||||||| ||||  |   |||| | ||||||||| ||||||| |||| ||||||| ||||||||||| ||||||||||||||    
T  9569120 gggtgggccaccaaaataaataatattatataaaacaaaatttatgttgtagttagtattaaatataaagttgagaatcaaaaaattaaa 9569031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 66; Significance: 1e-28; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 686 - 870
Target Start/End: Complemental strand, 11016499 - 11016320
Alignment:
Q  686 attaaacataaagttgagcatcaaaaaattaaactacatatgttaaaattttaaaataattctctacgcttttccaaatgactagaaatcatataaaata 785  Q
    |||||||||||||||||  ||||||||||||||| |||||| |||||| |||||||||||| |||| |   |||||||  ||| |||||||||||||||     
T  11016499 attaaacataaagttgaaaatcaaaaaattaaacaacatatattaaaaatttaaaataattatctatg-gattccaaaatacttgaaatcatataaaatt 11016401  T
Q  786 gaatcaaaattaataacttacactaacttctctttcaatataaattgtctatgatattattttagaattaatgtctcaaaattaa 870  Q
    ||||||||| || | || |||| ||||||||||| || ||||||||||| ||| |||   |||||||||||||||||||||||||    
T  11016400 gaatcaaaactact-acatacaataacttctcttccagtataaattgtc-atgttat--atttagaattaatgtctcaaaattaa 11016320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 775 - 870
Target Start/End: Original strand, 36683357 - 36683448
Alignment:
Q  775 catataaaatagaatcaaaattaataacttacactaacttctctttcaatataaattgtctatgatattattttagaattaatgtctcaaaattaa 870  Q
    |||||||||||||||||||| |||| |||||||||||||||| | |||||||| |||||| ||| |||   |||||||||||||||||||||||||    
T  36683357 catataaaatagaatcaaaactaat-acttacactaacttctttgtcaatatagattgtc-atgctat--atttagaattaatgtctcaaaattaa 36683448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 663 - 832
Target Start/End: Original strand, 48014912 - 48015076
Alignment:
Q  663 acaaaattaatgttgttgttaatattaaacataaagttgagcatcaaaaaattaaactacatatgttaaaattttaaaataattctctacgcttttccaa 762  Q
    |||| ||| ||||||| || || |||||||||||| |||| |||  |||||||||||||||||| || ||| || ||||||||| ||||| |  ||||||    
T  48014912 acaacatttatgttgtagtaaacattaaacataaaattgatcat--aaaaattaaactacatatctttaaagttaaaaataattatctactc-attccaa 48015008  T
Q  763 atgactagaaatcatataaaatagaatcaaaattaataacttacactaacttctctttcaatataaattg 832  Q
    || | | ||||||||  | |||| ||| | ||||||| ||||||| ||| ||||| ||||||||||||||    
T  48015009 ataatttgaaatcatcaataataaaat-acaattaat-acttacaataatttctcattcaatataaattg 48015076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 56; Significance: 1e-22; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 708 - 870
Target Start/End: Complemental strand, 21060379 - 21060222
Alignment:
Q  708 aaaaaattaaactacatatgttaaaattttaaaataattctctacgcttttccaaatgactagaaatcatataaaatagaatcaaaattaataacttaca 807  Q
    ||||||| |||| |||||| |||||||||||||| |||| | ||||| || | |||| ||| ||||||||| ||||||||||||||| | ||| | ||||    
T  21060379 aaaaaataaaacaacatatattaaaattttaaaacaattatgtacgcattacaaaat-acttgaaatcatacaaaatagaatcaaaacttata-cgtaca 21060282  T
Q  808 ctaacttctctttcaatataaattgtctatgatattattttagaattaatgtctcaaaattaa 870  Q
    ||||||||||||||||||||||| | | ||| |||   |||||||||||||||||||||||||    
T  21060281 ctaacttctctttcaatataaatgggc-atgctat--atttagaattaatgtctcaaaattaa 21060222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 708 - 870
Target Start/End: Complemental strand, 21079696 - 21079539
Alignment:
Q  708 aaaaaattaaactacatatgttaaaattttaaaataattctctacgcttttccaaatgactagaaatcatataaaatagaatcaaaattaataacttaca 807  Q
    ||||||| |||| |||||| |||||||||||||| |||| | |||||  |||||||  ||| ||||||||| ||||||||||||||| | || || ||||    
T  21079696 aaaaaataaaacaacatatattaaaattttaaaacaattatgtacgc-attccaaaatacttgaaatcatacaaaatagaatcaaaacttat-acgtaca 21079599  T
Q  808 ctaacttctctttcaatataaattgtctatgatattattttagaattaatgtctcaaaattaa 870  Q
    |||| |||| ||||||||||||| | | ||| |||   |||||||||||||||||||||||||    
T  21079598 ctaagttctttttcaatataaatgggc-atgctat--atttagaattaatgtctcaaaattaa 21079539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 699 - 753
Target Start/End: Complemental strand, 7650648 - 7650594
Alignment:
Q  699 ttgagcatcaaaaaattaaactacatatgttaaaattttaaaataattctctacg 753  Q
    |||| |||| |||||||||||||||||| |||||| ||| |||||||||||||||    
T  7650648 ttgatcatctaaaaattaaactacatatcttaaaaattttaaataattctctacg 7650594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 693 - 754
Target Start/End: Complemental strand, 32144682 - 32144621
Alignment:
Q  693 ataaagttgagcatcaaaaaattaaactacatatgttaaaattttaaaataattctctacgc 754  Q
    |||||||||| |||||||| |||| |||| |||  |||||| ||||||||||||||||||||    
T  32144682 ataaagttgatcatcaaaatattacactatatactttaaaaatttaaaataattctctacgc 32144621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 9e-17; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 647 - 748
Target Start/End: Complemental strand, 1604589 - 1604488
Alignment:
Q  647 aactacgatatacagaacaaaattaatgttgttgttaatattaaacataaagttgagcatcaaaaaattaaactacatatgttaaaattttaaaataatt 746  Q
    ||||| |||||| | ||||||||| ||||||| ||    |||||||||||||||||  ||||||||||||||| | |||| |||||||||||||||||||    
T  1604589 aactatgatatataaaacaaaattcatgttgtagtgtgcattaaacataaagttgaaaatcaaaaaattaaacaaaatatattaaaattttaaaataatt 1604490  T
Q  747 ct 748  Q
    ||    
T  1604489 ct 1604488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 686 - 751
Target Start/End: Original strand, 10505775 - 10505840
Alignment:
Q  686 attaaacataaagttgagcatcaaaaaattaaactacatatgttaaaattttaaaataattctcta 751  Q
    |||||||||||||||||  || |||||||||||||| |||| |||||| |||||||| ||||||||    
T  10505775 attaaacataaagttgaaaattaaaaaattaaactaaatatattaaaaatttaaaatgattctcta 10505840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 629 - 754
Target Start/End: Complemental strand, 43820491 - 43820370
Alignment:
Q  629 gggtgggccaccaaagtaaactacgatatacagaacaaaattaatgttgttgttaatattaaacataaagttgagcatcaaaaaattaaactacatatgt 728  Q
    ||||||||||||||| | |||||  ||||| | ||||||||| | ||||| ||    |||||| |||||||| |  ||||||||||||||| ||||||      
T  43820491 gggtgggccaccaaaatgaactaa-atatataaaacaaaatttacgttgtagtgtgcattaaatataaagttaaaaatcaaaaaattaaac-acatat-- 43820396  T
Q  729 taaaattttaaaataattctctacgc 754  Q
    ||||| ||||||||||||||||||||    
T  43820395 taaaaatttaaaataattctctacgc 43820370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 699 - 749
Target Start/End: Original strand, 30064562 - 30064612
Alignment:
Q  699 ttgagcatcaaaaaattaaactacatatgttaaaattttaaaataattctc 749  Q
    |||| ||| ||||||||||| |||| ||||||||| |||||||||||||||    
T  30064562 ttgatcattaaaaaattaaattacacatgttaaaaatttaaaataattctc 30064612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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