View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5071-Insertion-3 (Length: 719)
Name: NF5071-Insertion-3
Description: NF5071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5071-Insertion-3 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 420; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 296 - 719
Target Start/End: Complemental strand, 47111196 - 47110773
Alignment:
| Q |
296 |
ttatatgtagcatttaccctgagacaggtcccttggcgagtgttgcaaatgggatagttgtgaggacaacaacttgagtgatctttacagcagactgcag |
395 |
Q |
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| T |
47111196 |
ttatatgtagcatttaccctgagacaggtcccttggcgagtgttgcaaatgggatagttgtgaggacaacaacttgagtgatctttacagcagactgcag |
47111097 |
T |
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| Q |
396 |
cctcaagaggacaacatccccatgaaaagcaaagttttccaattccaaatacacaacaacaagtagtgcttgaagcgcaactgtgatatctactacaaac |
495 |
Q |
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| T |
47111096 |
cctcaagaggacaacatccccatgaaaagcaaagttttccaattccaaatacacaacaacaagtagtgcttgaagcgcaactgtgatatctactacaaac |
47110997 |
T |
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| Q |
496 |
gtttggtgggttcacaggtgaaggaggagatggtcctggatttgggggattttggcccttctttatgggataggaagactgcattgcgattccacatttg |
595 |
Q |
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| T |
47110996 |
gtttggtgggttcacaggtgaaggaggagatggtcctggatttgggggattttggcccttctttatgggataggaagactgcattacgattccacatttg |
47110897 |
T |
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| Q |
596 |
cctgccacgcttgctgctagattacgttccattcttacatagcctgattctccccagctcttaccccatgaatttcttactatccaataatcgactccat |
695 |
Q |
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| T |
47110896 |
cctgccacgcttgctgctagattacgttccattcttacatagcctgattctccccagctcttaccccatgaatttcttactatccaataatcgactccat |
47110797 |
T |
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| Q |
696 |
tttctgttccatacccaacagcgg |
719 |
Q |
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| T |
47110796 |
tttctgttccatacccaacagcgg |
47110773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 8 - 262
Target Start/End: Complemental strand, 47111474 - 47111220
Alignment:
| Q |
8 |
tgatctccaaaaggccagtgcagtttagccggagttctcttcattgccttcactccaaatggattatccttactctgcaatagaaacaattcaaatagtg |
107 |
Q |
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| T |
47111474 |
tgatctccaaaaggccagtgcagtttagccggagttctcttcattgccttcactccaaatggattatccttactctgcaatagaaacaattcaaatagtg |
47111375 |
T |
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| Q |
108 |
catgtttagtgataatgcaaagttaagtcttcaatgggaaactcagtatatatttatatgtctattctaggaaaaagtcttccccaactaatatgcttta |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| ||||||||||||||||| |||||||||||| |
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| T |
47111374 |
catgtttagtgataatgcaaagttaagtcttcaatgggaaactcagtatatatttatctatctattctaagaaaaagtcttccccaaataatatgcttta |
47111275 |
T |
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| Q |
208 |
aaatttcacacactttttcggacatttttgttcgttttaaaggaaaatatgccaa |
262 |
Q |
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| T |
47111274 |
aaatttcacacactttttcggacatttttgttcgttttaaaggaaaatatgccaa |
47111220 |
T |
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