View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5071-Insertion-4 (Length: 710)
Name: NF5071-Insertion-4
Description: NF5071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5071-Insertion-4 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 624; Significance: 0; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 624; E-Value: 0
Query Start/End: Original strand, 8 - 703
Target Start/End: Complemental strand, 39509921 - 39509226
Alignment:
| Q |
8 |
catcttgttgctaaagttgctgattttggtctttcaagaactggtcctcttgatcagcattcttatgtcaacacaggtgttaagggaactttcggttatc |
107 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
39509921 |
catcttgtagctaaagttgctgattttggtctttcaagaactggtcctcttgatcagcattcttatgtcagcacaggtgttaagggaactttcggttatc |
39509822 |
T |
|
| Q |
108 |
tcgatcctgagtactttagatcacaacagcttacagaaaaatctgatgtgtattcattcggcgtggttctacttgaagttttgtgtgcaagaccagccat |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| ||||||| |
|
|
| T |
39509821 |
tcgatcctgagtactttagatcacaacagcttacagaaaaatctgatgtgtattcattcggcgtggttctacttgaagtattatgtgcaagaacagccat |
39509722 |
T |
|
| Q |
208 |
tgaaccgtcccttccaagggaacaagtgaacttagctcagtggggaattttttgcaaagacaaagggctattggaagatatcattgatccttccatcaag |
307 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | ||||||||||||||||||||||||||| |
|
|
| T |
39509721 |
tgaaccgtcacttccaagggaacaagtgaacttagctcagtggggaattttttgcaaagacaaagggatacttgaagatatcattgatccttccatcaag |
39509622 |
T |
|
| Q |
308 |
ggacaaattgatccaaactcacttagaaagtttagtgagatagtggaaaagtgcttacaagatgatggttgtgataggccttcaatgggcgatgttttgt |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| |||| ||| |
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|
| T |
39509621 |
ggacaaattgatccaaactcacttagaaagtttagtgagaaagtggaaaaatgcttacaagatgatggttgtgataggccttcaatgggaaatgtaatgt |
39509522 |
T |
|
| Q |
408 |
gggacttggaatattctttgcagcttcagagaggtgcagtacacagagaacctcatgaggatagttctatcagtgcttctgtatcaattcaattgcccaa |
507 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
39509521 |
gggacttggaatattctttgcagcttcagagaggtgcagtacatagagaacctcatgaggatagttctaacagtgcttctgtatcaattcaattgcccaa |
39509422 |
T |
|
| Q |
508 |
tgttcgccgtttaccttctctgaatacactgagtgaagtggatgatatgtctatgcctattttgagggttattgatgaatctgatagtgctgggcattct |
607 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39509421 |
tgttcgccgtttaccttctctgaatacactgagtgaagtggatgatatgtctatgtctattttgagggttattgatgaatctgatagtgctgggcattct |
39509322 |
T |
|
| Q |
608 |
gttttctctgagttgaaccttgatgatgccagatagattttcatgtcatgtccttcaagatacaatgatcaactttcaagtgtctcaagtaagtgg |
703 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39509321 |
gttttctctgagttgaaccttgatgatgccagatagattttcatgtcatgtccttcaagatacaatgatcaactttcaagtgtctcaagtaagtgg |
39509226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 9 - 551
Target Start/End: Complemental strand, 39574820 - 39574293
Alignment:
| Q |
9 |
atcttgttgctaaagttgctgattttggtctttcaagaactggtcctcttgatcagcattcttatgtcaacacaggtgttaagggaactttcggttatct |
108 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||| || |||||||||||||| ||||||||||||| |||| ||||||| || ||||| || ||||| |
|
|
| T |
39574820 |
atcttgtagctaaagttgctgattttggtctttcaaggacaggtcctcttgatcaacattcttatgtcagcacatgtgttaaagggacttttgggtatct |
39574721 |
T |
|
| Q |
109 |
cgatcctgagtactttagatcacaacagcttacagaaaaatctgatgtgtattcattcggcgtggttctacttgaagttttgtgtgcaagaccagccatt |
208 |
Q |
| |
|
||||| || |||||||||||||||||||||||||||||||| ||||| || || || || ||||||||||||||||| ||||| |||||||||||||| |
|
|
| T |
39574720 |
tgatccggattactttagatcacaacagcttacagaaaaatccgatgtttactcttttggggtggttctacttgaagtgttgtgcgcaagaccagccata |
39574621 |
T |
|
| Q |
209 |
gaaccgtcccttccaagggaacaagtgaacttagctcagtggggaattttttgcaaagacaaagggctattggaagatatcattgatccttccatcaagg |
308 |
Q |
| |
|
|||| ||| |||||| || ||||| || || ||| |||||||| | |||||||||||||||| || | ||||| ||| |||||||||||||||||| |
|
|
| T |
39574620 |
gaactgtcttgtccaagtgagcaagtcaatttggctgagtggggattgcattgcaaagacaaagggatacttgaagagatcgttgatccttccatcaagg |
39574521 |
T |
|
| Q |
309 |
gacaaattgatccaaactcacttagaaagtttagtgagatagtggaaaagtgcttacaagatgatggttgtgataggccttcaatgggcgatgttttgtg |
408 |
Q |
| |
|
|||||| ||| ||||||||| |||| |||||||||| |||||||| |||||||| ||| |||| ||||||||||| |||||| ||||| ||||| |
|
|
| T |
39574520 |
cacaaatcaatcaaaactcactaagaatatttagtgagactgtggaaaaatgcttacacgattatgggtgtgataggccaacaatggttgatgtgttgtg |
39574421 |
T |
|
| Q |
409 |
ggacttggaatattctttgcagcttcagagaggtgcagtacacagagaacctcatgaggatagttctatcagtgcttctgtatcaattcaattgcccaat |
508 |
Q |
| |
|
||||||||||||| |||||||||||||| |||||||| |||||||||||||||| |||||||| || |||| |||||||||| ||| |
|
|
| T |
39574420 |
ggacttggaatatgctttgcagcttcag---------------agagaaccgcatgaggatagttctagcagtgcttttgcatcacttcaattgcctaat |
39574336 |
T |
|
| Q |
509 |
gttcgccgtttaccttctctgaatacactgagtgaagtggatg |
551 |
Q |
| |
|
|||| | ||||||||||||| ||||| || ||||||||||| |
|
|
| T |
39574335 |
gttcagcatttaccttctctgtctacaccgactgaagtggatg |
39574293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 177; E-Value: 5e-95
Query Start/End: Original strand, 9 - 551
Target Start/End: Complemental strand, 39579353 - 39578826
Alignment:
| Q |
9 |
atcttgttgctaaagttgctgattttggtctttcaagaactggtcctcttgatcagcattcttatgtcaacacaggtgttaagggaactttcggttatct |
108 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||| | |||||||||||||| ||||||||||| | |||||||||||| || ||||| || ||||| |
|
|
| T |
39579353 |
atcttgttgctaaagttgctgattttggcctttcaaaggcaggtcctcttgatcaacattcttatgtgagcacaggtgttaaagggacttttgggtatct |
39579254 |
T |
|
| Q |
109 |
cgatcctgagtactttagatcacaacagcttacagaaaaatctgatgtgtattcattcggcgtggttctacttgaagttttgtgtgcaagaccagccatt |
208 |
Q |
| |
|
|||||||| ||||||||||||| ||| |||||||||||||| ||||| ||||| || || ||||||||||||||||| ||||| |||||||||||||| |
|
|
| T |
39579253 |
tgatcctgattactttagatcactacaccttacagaaaaatccgatgtttattcttttggggtggttctacttgaagtgttgtgcgcaagaccagccatc |
39579154 |
T |
|
| Q |
209 |
gaaccgtcccttccaagggaacaagtgaacttagctcagtggggaattttttgcaaagacaaagggctattggaagatatcattgatccttccatcaagg |
308 |
Q |
| |
|
|||| ||| |||||| || ||||| || || ||| |||||||| | ||||||||||||||||| | | |||| || ||||||| || ||||||| |
|
|
| T |
39579153 |
gaactgtcttgtccaagtgagcaagtcaatttggctgagtggggattgctttgcaaagacaaagggacacttaaagagattgttgatccctctatcaagg |
39579054 |
T |
|
| Q |
309 |
gacaaattgatccaaactcacttagaaagtttagtgagatagtggaaaagtgcttacaagatgatggttgtgataggccttcaatgggcgatgttttgtg |
408 |
Q |
| |
|
|||||| ||| |||||||||||||| |||||||||| || |||| |||||||||||| ||||||||||||||| |||||| ||||| ||||| |
|
|
| T |
39579053 |
cacaaatcaatcaaaactcacttagaatatttagtgagaccatgaaaaaatgcttacaagatcgtggttgtgataggccaacaatggttgatgtgttgtg |
39578954 |
T |
|
| Q |
409 |
ggacttggaatattctttgcagcttcagagaggtgcagtacacagagaacctcatgaggatagttctatcagtgcttctgtatcaattcaattgcccaat |
508 |
Q |
| |
|
||||||||||||| |||||||||||||| |||||||| |||||||||||||||| |||||||| || |||| |||||||||| ||| |
|
|
| T |
39578953 |
ggacttggaatatgctttgcagcttcag---------------agagaaccacatgaggatagttctagcagtgcttttgcatcacttcaattgcctaat |
39578869 |
T |
|
| Q |
509 |
gttcgccgtttaccttctctgaatacactgagtgaagtggatg |
551 |
Q |
| |
|
|||| ||||||||||||||| ||| |||| | ||||||||| |
|
|
| T |
39578868 |
gttcagcgtttaccttctctgtctaccctgactaaagtggatg |
39578826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 9 - 440
Target Start/End: Complemental strand, 39542985 - 39542554
Alignment:
| Q |
9 |
atcttgttgctaaagttgctgattttggtctttcaagaactggtcctcttgatcagcattcttatgtcaacacaggtgttaagggaactttcggttatct |
108 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||| || |||||||||||| | ||||||||||||| |||| ||||||| || ||||| || ||||| |
|
|
| T |
39542985 |
atcttgtagctaaagttgctgattttggtctttcaaggacaggtcctcttgatgaacattcttatgtcagcacacgtgttaaagggacttttgggtatct |
39542886 |
T |
|
| Q |
109 |
cgatcctgagtactttagatcacaacagcttacagaaaaatctgatgtgtattcattcggcgtggttctacttgaagttttgtgtgcaagaccagccatt |
208 |
Q |
| |
|
|||||||| ||||||||| |||||||||||||||||||||||||||| ||||| || || |||||||||||||| || ||||| |||||||||||||| |
|
|
| T |
39542885 |
tgatcctgattactttagagcacaacagcttacagaaaaatctgatgtttattcttttggggtggttctacttgaggtgttgtgcgcaagaccagccatc |
39542786 |
T |
|
| Q |
209 |
gaaccgtcccttccaagggaacaagtgaacttagctcagtggggaattttttgcaaagacaaagggctattggaagatatcattgatccttccatcaagg |
308 |
Q |
| |
|
||| ||| |||||| || ||| | || || ||| |||||||| | ||||||||| |||||||| || | ||||| ||| |||||||||||||||||| |
|
|
| T |
39542785 |
gaattgtcttgtccaagtgagcaaataaatttggctgagtggggattgttttgcaaaaacaaagggatacttgaagagatcgttgatccttccatcaagg |
39542686 |
T |
|
| Q |
309 |
gacaaattgatccaaactcacttagaaagtttagtgagatagtggaaaagtgcttacaagatgatggttgtgataggccttcaatgggcgatgttttgtg |
408 |
Q |
| |
|
|||||| ||| ||||||||| |||| |||| |||| |||||||| |||||||| ||| |||||||||| ||||| |||||| ||||| ||||| |
|
|
| T |
39542685 |
cgcaaattaatcaaaactcactaagaatatttaacgagactgtggaaaaatgcttacatgattatggttgtgacaggccaacaatggttgatgtgttgtg |
39542586 |
T |
|
| Q |
409 |
ggacttggaatattctttgcagcttcagagag |
440 |
Q |
| |
|
||||||||||||| |||||||||| ||||||| |
|
|
| T |
39542585 |
ggacttggaatatgctttgcagctgcagagag |
39542554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 153; E-Value: 1e-80
Query Start/End: Original strand, 405 - 653
Target Start/End: Complemental strand, 39516592 - 39516344
Alignment:
| Q |
405 |
tgtgggacttggaatattctttgcagcttcagagaggtgcagtacacagagaacctcatgaggatagttctatcagtgcttctgtatcaattcaattgcc |
504 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
39516592 |
tgtgggacttggaatattctttgcagcttcagagaggtgcagtacatagagaacctcatgaggatagttctagcagtgcttctgtatcaattcaattgcc |
39516493 |
T |
|
| Q |
505 |
caatgttcgccgtttaccttctctgaatacactgagtgaagtggatgatatgtctatgcctattttgagggttattgatgaatctgatagtgctgggcat |
604 |
Q |
| |
|
|||||||||||||| ||||||||| |||||||||||||| |||||| | ||||||| ||||| || ||||||||||||||||||||||| | || |
|
|
| T |
39516492 |
taatgttcgccgtttgccttctctgtctacactgagtgaaggggatgacacgtctatgtctattggtagagttattgatgaatctgatagtgcagcagat |
39516393 |
T |
|
| Q |
605 |
tctgttttctctgagttgaaccttgatgatgccagatagattttcatgt |
653 |
Q |
| |
|
|||||||||||| ||||||| | |||||||| |||||||| ||||||| |
|
|
| T |
39516392 |
tctgttttctctcagttgaaaatagatgatgctagatagatattcatgt |
39516344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 466 - 551
Target Start/End: Complemental strand, 39542543 - 39542458
Alignment:
| Q |
466 |
ggatagttctatcagtgcttctgtatcaattcaattgcccaatgttcgccgtttaccttctctgaatacactgagtgaagtggatg |
551 |
Q |
| |
|
||||||||||| |||||||| || ||| |||||||||| ||||||| ||||||||||||||| | |||||| ||||||||||| |
|
|
| T |
39542543 |
ggatagttctagcagtgcttttgcgtcacttcaattgcctaatgttcagcgtttaccttctctgtctgcactgactgaagtggatg |
39542458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 131 - 201
Target Start/End: Complemental strand, 22901374 - 22901304
Alignment:
| Q |
131 |
caacagcttacagaaaaatctgatgtgtattcattcggcgtggttctacttgaagttttgtgtgcaagacc |
201 |
Q |
| |
|
||||| || ||||||||||| || ||||||||||| || || ||||| ||||| ||| ||||||||||||| |
|
|
| T |
22901374 |
caacaactaacagaaaaatcggacgtgtattcatttggggtagttctgcttgaggttctgtgtgcaagacc |
22901304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 131 - 201
Target Start/End: Complemental strand, 22953042 - 22952972
Alignment:
| Q |
131 |
caacagcttacagaaaaatctgatgtgtattcattcggcgtggttctacttgaagttttgtgtgcaagacc |
201 |
Q |
| |
|
||||| || ||||||||||| || ||||||||||| || || ||||| ||||| ||| ||||||||||||| |
|
|
| T |
22953042 |
caacaactaacagaaaaatcggacgtgtattcatttggggtagttctgcttgaggttctgtgtgcaagacc |
22952972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 202
Target Start/End: Complemental strand, 4652471 - 4652414
Alignment:
| Q |
145 |
aaaatctgatgtgtattcattcggcgtggttctacttgaagttttgtgtgcaagacca |
202 |
Q |
| |
|
||||||||||||||| |||||||| ||||| || ||||| || |||||||| |||||| |
|
|
| T |
4652471 |
aaaatctgatgtgtactcattcggtgtggtgcttcttgaggtgttgtgtgctagacca |
4652414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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