View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5071-Insertion-5 (Length: 380)
Name: NF5071-Insertion-5
Description: NF5071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5071-Insertion-5 |
 | |
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| [»] chr8 (7 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 350; Significance: 0; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 7 - 380
Target Start/End: Original strand, 4142516 - 4142889
Alignment:
| Q |
7 |
aataaagacatcgagtatataaacttacaaagcctacaaggctaagagaatcctcgctgtgataaaagctactatttcttcgtccactaacaagctcgag |
106 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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|
| T |
4142516 |
aataaagacatcgactatataaacttacaaagcctacaaggctaagagaatcctcgctgtgataaaagctactatttcttcgtccactaacaagctctag |
4142615 |
T |
|
| Q |
107 |
caataaaactccaaaactatagacatctgatttctctgagaaaagcccctccattgcatattccggtggcatataaccactgcatttaggatatatgtta |
206 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| |
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|
| T |
4142616 |
caataaaactccgaaactatagacatctgatttctctgagaaaagcccctccattgcatattcaggtggcatataaccactgcatttaggatatatatta |
4142715 |
T |
|
| Q |
207 |
gacaaacccatgttataataagacaaataataatgaaacaatttatttgtaatattaattccaacattgtaatgtccgatgagatatgattacttactaa |
306 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4142716 |
gacaaacccatattataataagacaaataataatgaaacaatttatttgtaatattaattccaacattgtaatgtccgatgagatatgattacttactaa |
4142815 |
T |
|
| Q |
307 |
gttccaacaaccctttttgtgttagcttcatcatcttctccaaatttaacaattctagctaaaccaaagtctga |
380 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4142816 |
gttccaacaaccctttttgtgttagcttcatcatcttctccaaatttaacaattctagctaaaccaaagtctga |
4142889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 7 - 380
Target Start/End: Original strand, 4120090 - 4120453
Alignment:
| Q |
7 |
aataaagacatcgagtatataaacttacaaagcctacaaggctaagagaatcctcgctgtgataaaagctactatttcttcgtccactaacaagctcgag |
106 |
Q |
| |
|
||||||||||| | |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| ||||| |||| ||| || |
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|
| T |
4120090 |
aataaagacattgcgtatataaacttacaaagcctacaaggctaagtgaatcctcgctgtgataaaagctcgtatttcttcgcccactgacaatctctag |
4120189 |
T |
|
| Q |
107 |
caataaaactccaaaactatagacatctgatttctctgagaaaagcccctccattgcatattccggtggcatataaccactgcatttaggatatatgtta |
206 |
Q |
| |
|
||||||||| ||||| ||||| |||||||||||||| |||||||||||||||||||||||||| || ||||||||||||||||||||| |||| |
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|
| T |
4120190 |
caataaaaccccaaagctatatacatctgatttctcagagaaaagcccctccattgcatattctggcggcatataaccactgcatttaaagcatat---- |
4120285 |
T |
|
| Q |
207 |
gacaaacccatgttataataagacaaataataatgaaacaatttatttgt---aatattaattccaacattgtaatgtccgatgagatatgattacttac |
303 |
Q |
| |
|
|||||||||||| | | |||| || |||||||| |||||| | || |||| |||||| | |||||| | |||||||| |||||||||| |
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|
| T |
4120286 |
---------atgttataataacaggagtaatgattaaacaattcatttgtagcattaataatcccaacaatataatgttcaatgagataggattacttac |
4120376 |
T |
|
| Q |
304 |
taagttccaacaaccctttttgtgttagcttcatcatcttctccaaatttaacaattctagctaaaccaaagtctga |
380 |
Q |
| |
|
|||||||| ||||||||||| |||||||||||||||||||||||| |||||||||||||||||| ||||||||||| |
|
|
| T |
4120377 |
taagttccgacaacccttttcgtgttagcttcatcatcttctccacctttaacaattctagctaacccaaagtctga |
4120453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 19 - 380
Target Start/End: Original strand, 4150546 - 4150901
Alignment:
| Q |
19 |
gagtatataaacttacaaagcctacaaggctaagagaatcctcgctgtgataaaagctactatttcttcgtccactaacaagctcgagcaataaaactcc |
118 |
Q |
| |
|
|||||| || |||||||||||||||||||||||||| ||||||| ||| |||||||||||||||||| ||| ||||||| ||| ||||||| ||| || |
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|
| T |
4150546 |
gagtatttagacttacaaagcctacaaggctaagagtatcctcgtgatgagaaaagctactatttcttcttccgctaacaatctccagcaatagaacccc |
4150645 |
T |
|
| Q |
119 |
aaaactatagacatctgatttctctgagaaaagcccctccattgcatattccggtggcatataaccactgcatttaggatatatgtta-gacaaacccat |
217 |
Q |
| |
|
||| ||||||||||||||||| || |||||||||||||||||||||||||| || |||||||||||||||||||||| | |||||||| | || |||| |
|
|
| T |
4150646 |
aaagctatagacatctgatttttcagagaaaagcccctccattgcatattcaggcggcatataaccactgcatttagaacatatgttactataacccca- |
4150744 |
T |
|
| Q |
218 |
gttataataagacaaataataatgaaacaatttatttgtaatattaattccaacattgtaatgtccgatgagatatgattacttactaagttccaacaac |
317 |
Q |
| |
|
| ||| | |||||| ||| |||| | | |||||||| | ||||||||||||| |||| || |||||||| | ||||||||||||||||||||| |
|
|
| T |
4150745 |
-----agtaaaaaaaataa-aattaaaccactcatttgtaacactaattccaacattataatatcaaatgagatagtactacttactaagttccaacaac |
4150838 |
T |
|
| Q |
318 |
cctttttgtgttagcttcatcatcttctccaaatttaacaattctagctaaaccaaagtctga |
380 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| |
|
|
| T |
4150839 |
cctttttgtgttagcttcatcatcttctccaaatttaacaattcttgctaaaccgaagtctga |
4150901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 7 - 195
Target Start/End: Original strand, 4130171 - 4130359
Alignment:
| Q |
7 |
aataaagacatcgagtatataaacttacaaagcctacaaggctaagagaatcctcgctgtgataaaagctactatttcttcgtccactaacaagctcgag |
106 |
Q |
| |
|
|||| |||||| || || ||| |||||||||||| |||||||||||||||||||| | ||||||||||| ||||||||||||| || |||| ||| || |
|
|
| T |
4130171 |
aatagagacatggattacatagacttacaaagccaacaaggctaagagaatcctcattttgataaaagctgttatttcttcgtccgcttacaatctctag |
4130270 |
T |
|
| Q |
107 |
caataaaactccaaaactatagacatctgatttctctgagaaaagcccctccattgcatattccggtggcatataaccactgcatttag |
195 |
Q |
| |
|
||||||||| ||||| ||||| ||||||||||||||||||||||| ||| ||||||||||||| || |||||||||||||| ||||||| |
|
|
| T |
4130271 |
caataaaacaccaaagctatatacatctgatttctctgagaaaagtccccccattgcatattcaggcggcatataaccactacatttag |
4130359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 23 - 195
Target Start/End: Original strand, 4159551 - 4159723
Alignment:
| Q |
23 |
atataaacttacaaagcctacaaggctaagagaatcctcgctgtgataaaagctactatttcttcgtccactaacaagctcgagcaataaaactccaaaa |
122 |
Q |
| |
|
||||| |||||||||||| ||||||||||||||||| ||| |||| ||||||||||| |||||||| || ||||||| ||| | ||||||||||||||| |
|
|
| T |
4159551 |
atatatacttacaaagccaacaaggctaagagaatcttcgttgtggtaaaagctactgtttcttcggccgctaacaatctctaacaataaaactccaaag |
4159650 |
T |
|
| Q |
123 |
ctatagacatctgatttctctgagaaaagcccctccattgcatattccggtggcatataaccactgcatttag |
195 |
Q |
| |
|
||||| |||||||||||||| || ||||| || |||||||||||||| || |||||||||||||||||||||| |
|
|
| T |
4159651 |
ctataaacatctgatttctcagaaaaaagtccttccattgcatattcaggcggcatataaccactgcatttag |
4159723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 297 - 380
Target Start/End: Original strand, 4130454 - 4130537
Alignment:
| Q |
297 |
tacttactaagttccaacaaccctttttgtgttagcttcatcatcttctccaaatttaacaattctagctaaaccaaagtctga |
380 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
4130454 |
tacttactaagttccaacaaccctttttgtgttagcttcatcaccttctccacctttaacaattctagctaaaccaaagtctga |
4130537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 299 - 380
Target Start/End: Original strand, 4159837 - 4159918
Alignment:
| Q |
299 |
cttactaagttccaacaaccctttttgtgttagcttcatcatcttctccaaatttaacaattctagctaaaccaaagtctga |
380 |
Q |
| |
|
|||||||||||||||||||||| |||||||| | ||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
4159837 |
cttactaagttccaacaaccctatttgtgtttgtttcatcatcttctcctcctttaacaattctagctaaaccaaagtctga |
4159918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 6e-16; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 111 - 194
Target Start/End: Original strand, 2723496 - 2723579
Alignment:
| Q |
111 |
aaaactccaaaactatagacatctgatttctctgagaaaagcccctccattgcatattccggtggcatataaccactgcattta |
194 |
Q |
| |
|
||||| ||||||||| | ||||||||||||||||| || ||||| ||||||||||||||||| | ||| || |||||||||||| |
|
|
| T |
2723496 |
aaaaccccaaaactaaatacatctgatttctctgaaaacagcccttccattgcatattccggagacatgtatccactgcattta |
2723579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 111 - 194
Target Start/End: Original strand, 2745326 - 2745409
Alignment:
| Q |
111 |
aaaactccaaaactatagacatctgatttctctgagaaaagcccctccattgcatattccggtggcatataaccactgcattta |
194 |
Q |
| |
|
||||| ||||||||| | ||||||||||||||||| || ||||| ||||||||||||||||| | ||| || |||||||||||| |
|
|
| T |
2745326 |
aaaaccccaaaactaaatacatctgatttctctgaaaacagcccttccattgcatattccggagacatgtatccactgcattta |
2745409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 111 - 194
Target Start/End: Original strand, 2711956 - 2712039
Alignment:
| Q |
111 |
aaaactccaaaactatagacatctgatttctctgagaaaagcccctccattgcatattccggtggcatataaccactgcattta |
194 |
Q |
| |
|
||||||||||||||| | | ||||||||||||||| || | ||| | |||||||||||| || | |||||| |||||||||||| |
|
|
| T |
2711956 |
aaaactccaaaactaaaaatatctgatttctctgaaaacaaccctttcattgcatattctggagacatatatccactgcattta |
2712039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 111 - 194
Target Start/End: Original strand, 2716873 - 2716956
Alignment:
| Q |
111 |
aaaactccaaaactatagacatctgatttctctgagaaaagcccctccattgcatattccggtggcatataaccactgcattta |
194 |
Q |
| |
|
||||| ||||||||| | ||||||||||||||||| || | || ||||||||||||||||| | ||| || |||||||||||| |
|
|
| T |
2716873 |
aaaaccccaaaactaaatacatctgatttctctgaaaacaatccttccattgcatattccggagacatgtatccactgcattta |
2716956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 111 - 191
Target Start/End: Original strand, 2704306 - 2704386
Alignment:
| Q |
111 |
aaaactccaaaactatagacatctgatttctctgagaaaagcccctccattgcatattccggtggcatataaccactgcat |
191 |
Q |
| |
|
||||| ||||| ||| | ||||||||||||||||| || | |||||||||||| ||||| || | |||||| ||||||||| |
|
|
| T |
2704306 |
aaaaccccaaagctaaaaacatctgatttctctgaaaacaacccctccattgcgtattctggagacatatatccactgcat |
2704386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 29 - 192
Target Start/End: Complemental strand, 19939459 - 19939299
Alignment:
| Q |
29 |
acttacaaagcctacaaggctaagagaatcctcgctgtgataaaagctactatttcttcgtccactaacaagctcgagcaataaaactccaaaactatag |
128 |
Q |
| |
|
||||||||| |||| |||| ||||||| || || || ||||||||| |||||||| |||||||| || ||| || | |||||||||||| ||| || |
|
|
| T |
19939459 |
acttacaaatcctaaaagggtaagagagtc---gcagtcataaaagcttgaatttcttcttccactaataatctcaagaagtaaaactccaaagctaaag |
19939363 |
T |
|
| Q |
129 |
acatctgatttctctgagaaaagcccctccattgcatattccggtggcatataaccactgcatt |
192 |
Q |
| |
|
||||| ||||| || || || || || | |||||||||||| || | ||||||||||||||||| |
|
|
| T |
19939362 |
acatcagatttatcagaaaacagtccttgcattgcatattctggagacatataaccactgcatt |
19939299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 29 - 192
Target Start/End: Complemental strand, 19970598 - 19970438
Alignment:
| Q |
29 |
acttacaaagcctacaaggctaagagaatcctcgctgtgataaaagctactatttcttcgtccactaacaagctcgagcaataaaactccaaaactatag |
128 |
Q |
| |
|
||||||||| |||| |||| ||||||| || || || ||||||||| |||||||| |||||||| || ||| || | |||||||||||| ||| || |
|
|
| T |
19970598 |
acttacaaatcctaaaagggtaagagagtc---gcagtcataaaagcttgaatttcttcttccactaataatctcaagaagtaaaactccaaagctaaag |
19970502 |
T |
|
| Q |
129 |
acatctgatttctctgagaaaagcccctccattgcatattccggtggcatataaccactgcatt |
192 |
Q |
| |
|
||||| ||||| || || || || || | |||||||||||| || | ||||||||||||||||| |
|
|
| T |
19970501 |
acatcagatttatcagaaaacagtccttgcattgcatattctggagacatataaccactgcatt |
19970438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 111 - 192
Target Start/End: Original strand, 20062380 - 20062461
Alignment:
| Q |
111 |
aaaactccaaaactatagacatctgatttctctgagaaaagcccctccattgcatattccggtggcatataaccactgcatt |
192 |
Q |
| |
|
||||| ||||| ||| | ||||||||||||||||| ||||| || | |||||| ||||| || | ||||||||||||||||| |
|
|
| T |
20062380 |
aaaacaccaaagctaaaaacatctgatttctctgaaaaaagtccttgcattgcgtattcaggagacatataaccactgcatt |
20062461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 111 - 193
Target Start/End: Complemental strand, 20289499 - 20289417
Alignment:
| Q |
111 |
aaaactccaaaactatagacatctgatttctctgagaaaagcccctccattgcatattccggtggcatataaccactgcattt |
193 |
Q |
| |
|
||||| ||||| ||| ||||||||||||||||||| || || || | |||||| ||||| || | ||||||||||||||||| |
|
|
| T |
20289499 |
aaaacaccaaagctaaagacatctgatttctctgaaaacagtccttgcattgcgtattcgggagatatataaccactgcattt |
20289417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 111 - 192
Target Start/End: Complemental strand, 20285188 - 20285107
Alignment:
| Q |
111 |
aaaactccaaaactatagacatctgatttctctgagaaaagcccctccattgcatattccggtggcatataaccactgcatt |
192 |
Q |
| |
|
||||| ||||||||| | | ||||||||||||||| || | || | ||||||||||||||| | |||||| |||||||||| |
|
|
| T |
20285188 |
aaaacaccaaaactaaaaaaatctgatttctctgaaaataatccttgcattgcatattccggagacatatagccactgcatt |
20285107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 111 - 193
Target Start/End: Original strand, 40823652 - 40823734
Alignment:
| Q |
111 |
aaaactccaaaactatagacatctgatttctctgagaaaagcccctccattgcatattccggtggcatataaccactgcattt |
193 |
Q |
| |
|
||||| ||||| ||| ||||||||||||||||||| || || || | ||| |||||||| || | ||||||||| |||||||| |
|
|
| T |
40823652 |
aaaacaccaaagctaaagacatctgatttctctgaaaacagtccttgcatcgcatattcaggggacatataaccgctgcattt |
40823734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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