View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5071-Insertion-6 (Length: 368)
Name: NF5071-Insertion-6
Description: NF5071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5071-Insertion-6 |
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Alignment Details
Target: chr7 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 8 - 286
Target Start/End: Original strand, 38937184 - 38937462
Alignment:
| Q |
8 |
attggtgaacacggaaaaataagttaaggaagttagatgagaaattgtgcgtggcaattctccatccaagttattattgttgacatcaaaagtttgcagt |
107 |
Q |
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| T |
38937184 |
attggtgaacacggaaaaataagttaaggaagttagatgagaaattgtgcgtggcaattctccatccaagttattattgttgacatcaaaagtttgcagt |
38937283 |
T |
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| Q |
108 |
gaggttaagtttccaatatccactggaatgttaccagagaggttgttgnnnnnnngatttatgactgttatgtttgtgagattccaaatggttggtggaa |
207 |
Q |
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| T |
38937284 |
gaggttaagtttccaatatccactggaatgttaccagagaggttgttgaagaaaagatttatgacggttatgtttgtgagattccatatggttgatggaa |
38937383 |
T |
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| Q |
208 |
ttggaccagagaaatggtttcctgaaaggtctaactctgtcatttcctttaagtttccaaactcttcaggaatgggacc |
286 |
Q |
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| T |
38937384 |
ttggaccagagaagtggtttcctgaaaggtctaaccctgtcattaccttcaagtttcctatctcatcagggattggacc |
38937462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 8 - 286
Target Start/End: Complemental strand, 39305768 - 39305490
Alignment:
| Q |
8 |
attggtgaacacggaaaaataagttaaggaagttagatgagaaattgtgcgtggcaattctccatccaagttattattgttgacatcaaaagtttgcagt |
107 |
Q |
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|||||||||||| |||||| ||||||||| ||||||||||| ||||||| |||||||||||| |||||||||||||||| |||||||||| |||||||| |
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| T |
39305768 |
attggtgaacacagaaaaagaagttaaggcagttagatgagcaattgtgtctggcaattctccttccaagttattattgtcgacatcaaaaatttgcagt |
39305669 |
T |
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| Q |
108 |
gaggttaagtttccaatatccactggaatgttaccagagaggttgttgnnnnnnngatttatgactgttatgtttgtgagattccaaatggttggtggaa |
207 |
Q |
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|| ||||||||||||||||||| |||||| || ||||||||||||||| |||||||||| |||||||||||||||||||| ||||||| ||||| |
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| T |
39305668 |
gaagttaagtttccaatatccattggaatatttccagagaggttgttgaagaaaagatttatgacggttatgtttgtgagattccatatggttgatggaa |
39305569 |
T |
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| Q |
208 |
ttggaccagagaaatggtttcctgaaaggtctaactctgtcatttcctttaagtttccaaactcttcaggaatgggacc |
286 |
Q |
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||||||||||||| ||||||||||||||||||||| |||||||| |||| |||||||| | ||| ||||| || ||||| |
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| T |
39305568 |
ttggaccagagaagtggtttcctgaaaggtctaaccctgtcattaccttcaagtttcctatctcatcagggattggacc |
39305490 |
T |
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