View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5071-Insertion-8 (Length: 295)
Name: NF5071-Insertion-8
Description: NF5071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5071-Insertion-8 |
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| [»] chr8 (4 HSPs) |
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| [»] scaffold0391 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 261; Significance: 1e-145; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 19 - 295
Target Start/End: Complemental strand, 33973575 - 33973299
Alignment:
| Q |
19 |
tggttgagaagctcaagaatttctctggccttgtaaagtgtctcttcgacatcctttacaataagagattggttctcatcaacaacgtaggaatcattct |
118 |
Q |
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| T |
33973575 |
tggttgagaagctcaagaatttctctggccttgtaaagtgtctcttcgacatcatttacaataagagattggttctcatcaacaacgtaggaatcattct |
33973476 |
T |
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| Q |
119 |
caaaagaagatttgcatgcactttcttctatcaaactatttatttcttctctgggttgatccaagtgttcattgtaatgctttatatcttgtacaacggg |
218 |
Q |
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| T |
33973475 |
caaaagaagatttgcatgcactttcttctatcaaactatttatttcttctctgggttgatccaagtgttcattgtaatgctttatatcttgtacaacggg |
33973376 |
T |
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| Q |
219 |
agataaatcctttaagattaacctcaacaatagccttgcactttggttctttcgtgctgtttcaactattacagata |
295 |
Q |
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| T |
33973375 |
agataaatcctttaagattaacctaaacaatagccttgaactttggttctttcgtgctgtttcaactatttcagata |
33973299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 15 - 288
Target Start/End: Complemental strand, 33990406 - 33990118
Alignment:
| Q |
15 |
ttcatggttgagaagctcaagaatttctctggccttgtaaagtgtctcttcgacatcctttacaataagagattggttctcatcaacaacgtaggaatca |
114 |
Q |
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| T |
33990406 |
ttcatagttgagaagctcaagaatttctctggccttataaagtgtctcttcaacatcatttacaataagagattggttctcatcaacaacataggaatca |
33990307 |
T |
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| Q |
115 |
ttctcaaaagaagatttgcatgcactttcttct--atc-------------aaactatttatttcttctctgggttgatccaagtgttcattgtaatgct |
199 |
Q |
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| T |
33990306 |
ttctcagaagaacatttgcatgcactttcttctgcatcattttcttctaatagagtcttgatttcttctctgggatgatccaaatgttcattgtattgct |
33990207 |
T |
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| Q |
200 |
ttatatcttgtacaacgggagataaatcctttaagattaacctcaacaatagccttgcactttggttctttcgtgctgtttcaactatt |
288 |
Q |
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| T |
33990206 |
ttatgtcttgaaccacaagagttaaatccttcaagattgacctcaacaattgccttgcactttggtgctttcgtgctgtttcaactatt |
33990118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 8 - 276
Target Start/End: Complemental strand, 33950943 - 33950654
Alignment:
| Q |
8 |
cattgaattcatggttgagaagctcaagaatttctctggccttgtaaagtgtctcttcgacatcctttacaataagagattggttctcatcaacaacgta |
107 |
Q |
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| T |
33950943 |
cattgaattcatggttgagaagctcaagaatttctctggtcttataaagcgtctcttcaacatcatttacagtaagagattggttctcctcaacaacata |
33950844 |
T |
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| Q |
108 |
g------gaatcattctcaaaagaagatttgcatgcactttct---------------tctatcaaactatttatttcttctctgggttgatccaagtgt |
186 |
Q |
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| T |
33950843 |
gccataggaatcattctcagaagaacatgtacatgcactttctcctgcatcattttcttctatcagactatttatttcttctctggggtgatccaaatga |
33950744 |
T |
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| Q |
187 |
tcattgtaatgctttatatcttgtacaacgggagataaatcctttaagattaacctcaacaatagccttgcactttggttctttcgtgct |
276 |
Q |
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| T |
33950743 |
tcattgtattgctttatatcttgtacaacgggagataaatcctttaagattaacctcaatgatcgccttgaactttggttcttttgtgct |
33950654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 19 - 231
Target Start/End: Complemental strand, 33959573 - 33959346
Alignment:
| Q |
19 |
tggttgagaagctcaagaatttctctggccttgtaaagtgtctcttcgacatcctttacaataagagattggttctcatcaacaacgtaggaatcattct |
118 |
Q |
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|||||||||||||||||||||||||| | ||| |||||||| ||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
33959573 |
tggttgagaagctcaagaatttctcttggcttataaagtgtttcttcaacatcatttacaataagagattggttctcatcaacaacataggaatcattct |
33959474 |
T |
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| Q |
119 |
caaaagaagatttgcatgcact---------------ttcttctatcaaactatttatttcttctctgggttgatccaagtgttcattgtaatgctttat |
203 |
Q |
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| T |
33959473 |
cagaagaacatttgcatgcactttctcctgcatcattttcttctattagactatttatttcctctctggggtgatccaaatgatcattgtattgctttat |
33959374 |
T |
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| Q |
204 |
atcttgtacaacgggagataaatccttt |
231 |
Q |
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| T |
33959373 |
gtcttgaaccacaggagataaatccttt |
33959346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0391 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: scaffold0391
Description:
Target: scaffold0391; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 25 - 114
Target Start/End: Complemental strand, 10424 - 10335
Alignment:
| Q |
25 |
agaagctcaagaatttctctggccttgtaaagtgtctcttcgacatcctttacaataagagattggttctcatcaacaacgtaggaatca |
114 |
Q |
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||||| |||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||| |||||||| || ||||||||| |
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| T |
10424 |
agaagttcaagaatttctctggccttgtaaagtgtctctttaacatcatttaccgtaagagattggttatcatcaacgacataggaatca |
10335 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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