View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5071_high_1 (Length: 991)

Name: NF5071_high_1
Description: NF5071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5071_high_1
NF5071_high_1
[»] chr2 (5 HSPs)
chr2 (776-968)||(18929696-18929887)
chr2 (60-249)||(17403898-17404087)
chr2 (772-952)||(17403198-17403377)
chr2 (869-970)||(26651299-26651400)
chr2 (804-924)||(25519999-25520118)
[»] chr3 (9 HSPs)
chr3 (771-949)||(9033046-9033225)
chr3 (772-955)||(4770126-4770307)
chr3 (801-950)||(4765286-4765434)
chr3 (869-949)||(15687340-15687420)
chr3 (870-977)||(24698727-24698834)
chr3 (871-964)||(16242605-16242699)
chr3 (869-966)||(29614037-29614135)
chr3 (882-949)||(4832190-4832258)
chr3 (869-952)||(13428406-13428488)
[»] chr6 (6 HSPs)
chr6 (772-977)||(17525241-17525444)
chr6 (802-930)||(31125745-31125872)
chr6 (775-949)||(22394009-22394179)
chr6 (869-953)||(16177672-16177759)
chr6 (910-966)||(1176918-1176974)
chr6 (880-966)||(32784447-32784534)
[»] chr5 (12 HSPs)
chr5 (799-966)||(20064063-20064227)
chr5 (868-966)||(25951685-25951783)
chr5 (869-966)||(20058300-20058397)
chr5 (868-966)||(21165557-21165655)
chr5 (866-966)||(23209772-23209872)
chr5 (180-247)||(24879513-24879580)
chr5 (869-962)||(20061232-20061323)
chr5 (869-913)||(19217727-19217771)
chr5 (842-950)||(24878782-24878889)
chr5 (838-913)||(17987914-17987988)
chr5 (915-966)||(20713596-20713647)
chr5 (838-948)||(22011479-22011588)
[»] chr4 (2 HSPs)
chr4 (868-977)||(11362051-11362160)
chr4 (835-913)||(10071001-10071078)
[»] chr8 (4 HSPs)
chr8 (868-977)||(23539981-23540090)
chr8 (757-967)||(28371496-28371705)
chr8 (871-949)||(10662109-10662187)
chr8 (772-949)||(16600980-16601159)
[»] chr7 (6 HSPs)
chr7 (856-949)||(2545771-2545864)
chr7 (871-977)||(14986744-14986846)
chr7 (871-977)||(15416355-15416457)
chr7 (869-966)||(4173104-4173201)
chr7 (868-977)||(20146262-20146371)
chr7 (867-903)||(2563197-2563233)
[»] chr1 (4 HSPs)
chr1 (757-950)||(22619579-22619770)
chr1 (869-977)||(11013493-11013601)
chr1 (872-977)||(20146581-20146686)
chr1 (868-950)||(17615684-17615766)
[»] scaffold0002 (1 HSPs)
scaffold0002 (772-925)||(373696-373847)
[»] scaffold0795 (1 HSPs)
scaffold0795 (869-977)||(5725-5833)
[»] scaffold0555 (1 HSPs)
scaffold0555 (876-956)||(5337-5417)
[»] scaffold0161 (1 HSPs)
scaffold0161 (876-977)||(5287-5388)


Alignment Details
Target: chr2 (Bit Score: 129; Significance: 3e-66; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 129; E-Value: 3e-66
Query Start/End: Original strand, 776 - 968
Target Start/End: Complemental strand, 18929887 - 18929696
Alignment:
Q  776 atcatgctttgaaatacttagcgttttctcaaaaatgtcaattctctccgttgattatattccgtcgaaaatggcatttcttggggggcaatttgttagc 875  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||| |||| ||||||| |||||||||| ||||| ||| |||| |||||||||||    
T  18929887 atcatgctttgaaatacttagagttttctcaaaaatgtcaattctctcctttgaatatattcagtcgaaaatgacattt-ttgaggggaaatttgttagc 18929789  T
Q  876 tggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtcttttcttcaatcaaaggagtttc 968  Q
    |||||||||||||| |||||||||||||||| |||||| ||||| |||||||||||||||||||||||| ||||| ||||| |||||||||||    
T  18929788 tggtattttcaccaacctcatttaatgtggtgaacattagttgacttttactcttgcaggaattgaagtattttcctcaattaaaggagtttc 18929696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 98; E-Value: 9e-48
Query Start/End: Original strand, 60 - 249
Target Start/End: Complemental strand, 17404087 - 17403898
Alignment:
Q  60 atcatttggctcattaaggacatattgagcgaatcatgtgagaagactataggtttgtgaccttcgcggccaggaaagtcgtcctcaaccttttcagggt 159  Q
    ||||| |||||||| || ||||| ||||||||| ||||||| | |||| |||||||| ||||||||| |||||||||||| |||||||||||||||||||    
T  17404087 atcatgtggctcatgaaagacatgttgagcgaagcatgtgaaaggactctaggtttgcgaccttcgctgccaggaaagtcttcctcaaccttttcagggt 17403988  T
Q  160 ctaatttggaatatgcaaagggccctaggaaggcgtgaacagtaccagagacagagtatggaataagtacatgagatttccaaatcttgg 249  Q
     ||||||||||| ||   | |||||||  ||||||| ||||||||||||||||||||||||||| ||||| ||||||||| |||||||||    
T  17403987 gtaatttggaatctgggtaaggccctataaaggcgtaaacagtaccagagacagagtatggaatgagtacctgagatttctaaatcttgg 17403898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 772 - 952
Target Start/End: Complemental strand, 17403377 - 17403198
Alignment:
Q  772 tgacatcatgctttgaaatacttagcgttttctcaaaaatgtcaattctctccgttgattatattccgtcgaaaatggcatttcttggggggcaatttgt 871  Q
    ||||||||||||||||||||||||| |||| || ||||||||||||  ||||| | ||  || ||  ||| |||||||||||| ||   ||| ||||| |    
T  17403377 tgacatcatgctttgaaatacttagagttt-ctgaaaaatgtcaatcttctccttcgaaaatctttagtcaaaaatggcatttttttttgggaaattttt 17403279  T
Q  872 tagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtcttttctt 952  Q
    ||||||||| ||| |||||||||||||||||||||||||||| ||| | ||||||  |||||| |||||||||||||||||    
T  17403278 tagctggtaattttaccagcctcatttaatgtggtcaacattagttaacttttacctttgcagcaattgaagtcttttctt 17403198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 869 - 970
Target Start/End: Complemental strand, 26651400 - 26651299
Alignment:
Q  869 tgttagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtcttttcttcaatcaaaggagtttc 968  Q
    ||||||| |||| |||||||||||||||||||||||||||| ||| ||||| |||||||||||||| ||| ||||| ||||||||||   ||||||||||    
T  26651400 tgttagcaggtaatttcaccagcctcatttaatgtggtcaatattagttgacttttactcttgcagaaatcgaagttttttcttcaacttaaggagtttc 26651301  T
Q  969 aa 970  Q
    ||    
T  26651300 aa 26651299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 804 - 924
Target Start/End: Original strand, 25519999 - 25520118
Alignment:
Q  804 tcaaaaatgtcaattctctccgttgattatattccgtcgaaaatggcatttcttggggggcaatttgttagctggtattttcaccagcctcatttaatgt 903  Q
    ||||||||| ||||| ||||| | |||||||||| |||||||||||||||| ||||| |||||||||||||   |||||||||  || |  ||||||||     
T  25519999 tcaaaaatgccaattatctccttcgattatattcagtcgaaaatggcattt-ttgggtggcaatttgttaggctgtattttcaaaaggccaatttaatgc 25520097  T
Q  904 ggtcaacattggttgattttt 924  Q
     ||||||||| ||||| ||||    
T  25520098 agtcaacattagttgactttt 25520118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 106; Significance: 2e-52; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 106; E-Value: 2e-52
Query Start/End: Original strand, 771 - 949
Target Start/End: Original strand, 9033046 - 9033225
Alignment:
Q  771 gtgacatcatgctttgaaatacttagcgttttctcaaaaatgtcaattctctccgttgattatattccgtcgaaaatggcatttcttggggggc--aatt 868  Q
    |||||||||||||||| |||||||    ||||| |||||||| |||||| |||| |||||||||||| |||||||||||||||| ||||||| |  ||||    
T  9033046 gtgacatcatgctttggaatactttaatttttcccaaaaatgccaattccctcctttgattatattcagtcgaaaatggcattt-ttgggggtcccaatt 9033144  T
Q  869 tgttagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtctttt 949  Q
    ||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||||||    
T  9033145 tgttagctggtattttcaccagcctcatttaatatggtcaacattagttgacttttactcttgcaggaattgaagtctttt 9033225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 772 - 955
Target Start/End: Complemental strand, 4770307 - 4770126
Alignment:
Q  772 tgacatcatgctttgaaatacttagcgttttctcaaaaatgtcaattctctccgttgattatattccgtcgaaaatggcatttcttggggggcaatttgt 871  Q
    ||||||||||||||||||||||||| |||| || ||||||| ||||||||||| | || || |||| |||||||||||||||||  |||||| || ||||    
T  4770307 tgacatcatgctttgaaatacttagagttt-ctaaaaaatgccaattctctccttcgaatagattcagtcgaaaatggcatttca-ggggggtaaattgt 4770210  T
Q  872 tagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtcttttcttcaa 955  Q
    ||||||||| ||| | ||| ||| |||||||||| ||||||| ||| | |||||  ||||||||||| | ||||||||||||||    
T  4770209 tagctggtaattttaacagactcgtttaatgtggccaacattcgtttacttttatccttgcaggaatcgtagtcttttcttcaa 4770126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 70; E-Value: 5e-31
Query Start/End: Original strand, 801 - 950
Target Start/End: Original strand, 4765286 - 4765434
Alignment:
Q  801 ttctcaaaaatgtcaattctctccgttgattatattccgtcgaaaatggcatttcttggggggcaatttgttagctggtattttcaccagcctcatttaa 900  Q
    |||||||||||  ||||||||||| |  | | | ||| |||||||||||||||| |||||| | |||||||||| ||| |||||||||||||||||||||    
T  4765286 ttctcaaaaataccaattctctccttctaatttgttcagtcgaaaatggcattt-ttggggtgtaatttgttagttggaattttcaccagcctcatttaa 4765384  T
Q  901 tgtggtcaacattggttgatttttactcttgcaggaattgaagtcttttc 950  Q
    |||| |||||||| ||||| |||||||||||||||||| ||||| |||||    
T  4765385 tgtgatcaacattagttgacttttactcttgcaggaatcgaagttttttc 4765434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 869 - 949
Target Start/End: Complemental strand, 15687420 - 15687340
Alignment:
Q  869 tgttagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtctttt 949  Q
    ||||||||||||  ||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||  |||||||||    
T  15687420 tgttagctggtaagttcaccagcctcatttaatgtggtcaacattagttgacttttactcttgtaggaatcaaagtctttt 15687340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 870 - 977
Target Start/End: Original strand, 24698727 - 24698834
Alignment:
Q  870 gttagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtcttttcttcaatcaaaggagtttca 969  Q
    |||||||| || |||||||| ||||||||||| | ||||||||| ||||| ||||||| ||| |||||||||||||||||||||||   ||||||||||     
T  24698727 gttagctgataatttcaccaacctcatttaatttagtcaacattagttgacttttactattggaggaattgaagtcttttcttcaacataaggagtttcg 24698826  T
Q  970 aagagatg 977  Q
    | ||||||    
T  24698827 acgagatg 24698834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 871 - 964
Target Start/End: Original strand, 16242605 - 16242699
Alignment:
Q  871 ttagctggtattttcaccagcctcatttaatgtggtcaacattggtt-gatttttactcttgcaggaattgaagtcttttcttcaatcaaaggag 964  Q
    |||||||||||||||| || ||||||||||||||||||||||| ||| || | ||||| |||||||||  ||||||||||| |||||||||||||    
T  16242605 ttagctggtattttcatcaacctcatttaatgtggtcaacattagttagactgttacttttgcaggaagcgaagtcttttcctcaatcaaaggag 16242699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 869 - 966
Target Start/End: Original strand, 29614037 - 29614135
Alignment:
Q  869 tgttagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaag-tcttttcttcaatcaaaggagtt 966  Q
    ||||||||| ||||||||| ||||||||||||||||||||| ||| ||||| ||||||||||||| ||||  ||| | |||||||||| | ||||||||    
T  29614037 tgttagctgctattttcactagcctcatttaatgtggtcaatattagttgacttttactcttgcatgaatcaaagtttttttcttcaaacgaaggagtt 29614135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 882 - 949
Target Start/End: Original strand, 4832190 - 4832258
Alignment:
Q  882 tttcaccagcctcatttaatgtggtcaacattggttga-tttttactcttgcaggaattgaagtctttt 949  Q
    |||||||||||||||||||| ||||||||||| ||||| ||||||   |||||||||| ||||||||||    
T  4832190 tttcaccagcctcatttaatatggtcaacattagttgactttttatctttgcaggaatcgaagtctttt 4832258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 869 - 952
Target Start/End: Original strand, 13428406 - 13428488
Alignment:
Q  869 tgttagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtcttttctt 952  Q
    |||||||||||| ||||||||||||| ||||||| |||| ||||| ||||| |||  || ||||| |||| ||||| |||||||    
T  13428406 tgttagctggtaatttcaccagcctcgtttaatgcggtcgacattagttgactttatct-ttgcatgaatcgaagtgttttctt 13428488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 90; Significance: 6e-43; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 90; E-Value: 6e-43
Query Start/End: Original strand, 772 - 977
Target Start/End: Complemental strand, 17525444 - 17525241
Alignment:
Q  772 tgacatcatgctttgaaatacttagcgttttctcaaaaatgtcaattctctccgttgattatattccgtcgaaaatggcatttcttggggggcaatttgt 871  Q
    |||||||||||||| |||||||||| ||||| ||||||||    ||||||||| |||| ||||||  ||||||||| |||||| ||||||||||||||||    
T  17525444 tgacatcatgcttttaaatacttagagtttt-tcaaaaattctgattctctcctttgaatatattttgtcgaaaatagcattt-ttggggggcaatttgt 17525347  T
Q  872 tagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtcttttcttcaatcaaaggagtttcaaa 971  Q
    ||||||||| ||||||||| |||||||||||||||||||||| ||||| |||||||| |  |||||| |||| |||||||||||   ||| ||||||||     
T  17525346 tagctggtaatttcaccagtctcatttaatgtggtcaacattagttgacttttactcctctaggaatcgaagccttttcttcaacttaagaagtttcaac 17525247  T
Q  972 gagatg 977  Q
    ||||||    
T  17525246 gagatg 17525241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 802 - 930
Target Start/End: Original strand, 31125745 - 31125872
Alignment:
Q  802 tctcaaaaatgtcaattctctccgttgattatattccgtcgaaaatggcatttcttggggggcaatttgttagctggtattttcaccagcctcatttaat 901  Q
    ||||||||||| ||||||||||| |||| ||||||| || ||||||  ||||| || ||||||||||| ||||||| ||||||||||| |||||||||||    
T  31125745 tctcaaaaatgccaattctctcctttgaatatattcagtagaaaatttcattt-ttagggggcaattttttagctgatattttcaccatcctcatttaat 31125843  T
Q  902 gtggtcaacattggttgatttttactctt 930  Q
    |||||||||||| ||||| ||||||||||    
T  31125844 gtggtcaacattagttgacttttactctt 31125872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 775 - 949
Target Start/End: Original strand, 22394009 - 22394179
Alignment:
Q  775 catcatgctttgaaatacttagcgttttctcaaaaatgtcaattctctccgttgattatattccgtcgaaaatggcatttcttggggggcaatttgttag 874  Q
    ||||||||| || ||||||||| |||| |||||||||  ||||| ||||| |  | || |||  |||||||||| ||||| |||||||||||| ||||||    
T  22394009 catcatgctctggaatacttagagttt-ctcaaaaattccaattatctccttcaaatagattttgtcgaaaatgacattt-ttggggggcaatctgttag 22394106  T
Q  875 ctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtctttt 949  Q
     ||||| ||||||||||||  |||||||||||||||||| |||   ||||||||||||||||||  |||||||||    
T  22394107 ttggtaatttcaccagcct--tttaatgtggtcaacattagttccgttttactcttgcaggaatcaaagtctttt 22394179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 869 - 953
Target Start/End: Complemental strand, 16177759 - 16177672
Alignment:
Q  869 tgttagctggtattttcacc---agcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtcttttcttc 953  Q
    ||||||||||||||||||||   |||||||||||||||||| |||||| ||||| ||||||||||| ||||||  |||||||||||||    
T  16177759 tgttagctggtattttcacctccagcctcatttaatgtggttaacattagttgacttttactcttgtaggaatcaaagtcttttcttc 16177672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 910 - 966
Target Start/End: Original strand, 1176918 - 1176974
Alignment:
Q  910 cattggttgatttttactcttgcaggaattgaagtcttttcttcaatcaaaggagtt 966  Q
    |||| ||||| |||||||||||||||||| ||| ||||||||||||| |||||||||    
T  1176918 cattagttgacttttactcttgcaggaatcgaaatcttttcttcaataaaaggagtt 1176974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 880 - 966
Target Start/End: Complemental strand, 32784534 - 32784447
Alignment:
Q  880 attttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtc-ttttcttcaatcaaaggagtt 966  Q
    ||||||| ||| ||||||||||||||| || ||| ||||| ||||||| || ||||||||||| || |||||| ||||||| ||||||    
T  32784534 attttcatcagtctcatttaatgtggttaatattagttgacttttacttttacaggaattgaaatctttttctacaatcaatggagtt 32784447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 85; Significance: 5e-40; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 85; E-Value: 5e-40
Query Start/End: Original strand, 799 - 966
Target Start/End: Original strand, 20064063 - 20064227
Alignment:
Q  799 ttttctcaaaaatgtcaattctctccgttgattatattccgtcgaaaatggcatttcttggggggcaatttgttagctggtattttcaccagcctcattt 898  Q
    ||||| ||||||||||||| |||||| |||| ||   ||  ||||||||| ||||| ||||||| |||||||||||||| |||||||||||||||| |||    
T  20064063 ttttcccaaaaatgtcaatcctctcctttgagtag--tcattcgaaaatgacattt-ttgggggacaatttgttagctgttattttcaccagcctcgttt 20064159  T
Q  899 aatgtggtcaacattggttgatttttactcttgcaggaattgaagtcttttcttcaatcaaaggagtt 966  Q
    ||||||||||||||  ||||| |||||||||||||||||| ||||||||||||||||||||| |||||    
T  20064160 aatgtggtcaacatcagttgacttttactcttgcaggaatcgaagtcttttcttcaatcaaaagagtt 20064227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 868 - 966
Target Start/End: Complemental strand, 25951783 - 25951685
Alignment:
Q  868 ttgttagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtcttttcttcaatcaaaggagtt 966  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| ||||  |||||||||||  |||||||||||||    
T  25951783 ttgttagctggtattttcaccagcctcatttaatgtggtcaacattagttgacttttactcttgcacgaatcaaagtcttttctctaatcaaaggagtt 25951685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 70; E-Value: 5e-31
Query Start/End: Original strand, 869 - 966
Target Start/End: Original strand, 20058300 - 20058397
Alignment:
Q  869 tgttagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtcttttcttcaatcaaaggagtt 966  Q
    ||||||||| ||||||||||||||||||||||||||||||  ||| ||||| |||||||||||||||||| ||||||||||||||||||||| |||||    
T  20058300 tgttagctgatattttcaccagcctcatttaatgtggtcagtattagttgacttttactcttgcaggaatcgaagtcttttcttcaatcaaaagagtt 20058397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 868 - 966
Target Start/End: Complemental strand, 21165655 - 21165557
Alignment:
Q  868 ttgttagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtcttttcttcaatcaaaggagtt 966  Q
    ||||||||| ||||||| |||||||||| ||||||||||||||||| ||||| |||||||||||||||||  ||||||||| |||||||||||||||||    
T  21165655 ttgttagctagtatttttaccagcctcacttaatgtggtcaacattagttgacttttactcttgcaggaagcgaagtctttccttcaatcaaaggagtt 21165557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 866 - 966
Target Start/End: Original strand, 23209772 - 23209872
Alignment:
Q  866 atttgttagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtcttttcttcaatcaaaggagt 965  Q
    |||| ||||||| ||||| ||||||||||| ||||||||||||||| | ||||| |||||||||||||||||| ||||| |||||||||| |||||||||    
T  23209772 atttattagctgttatttgcaccagcctcaattaatgtggtcaacaatagttgacttttactcttgcaggaatcgaagtattttcttcaaacaaaggagt 23209871  T
Q  966 t 966  Q
    |    
T  23209872 t 23209872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 180 - 247
Target Start/End: Complemental strand, 24879580 - 24879513
Alignment:
Q  180 ggccctaggaaggcgtgaacagtaccagagacagagtatggaataagtacatgagatttccaaatctt 247  Q
    |||||||| |||| || ||||||||||||||||||||||||||| ||||| |||||||||||||||||    
T  24879580 ggccctagaaaggtgtaaacagtaccagagacagagtatggaatgagtacctgagatttccaaatctt 24879513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 869 - 962
Target Start/End: Complemental strand, 20061323 - 20061232
Alignment:
Q  869 tgttagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtcttttcttcaatcaaagg 962  Q
    |||| |||||||||| |||||||||| |||||| |||||| |||| ||||| |||||||||||||||||| ||||| ||||||||||| |||||    
T  20061323 tgtttgctggtattt-caccagcctcgtttaatatggtcaccattagttgacttttactcttgcaggaatcgaagt-ttttcttcaatgaaagg 20061232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 869 - 913
Target Start/End: Original strand, 19217727 - 19217771
Alignment:
Q  869 tgttagctggtattttcaccagcctcatttaatgtggtcaacatt 913  Q
    |||||||||||| ||||||||||||||||||||||||||||||||    
T  19217727 tgttagctggtaatttcaccagcctcatttaatgtggtcaacatt 19217771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 842 - 950
Target Start/End: Complemental strand, 24878889 - 24878782
Alignment:
Q  842 gaaaatggcatttcttggggggcaatttgttagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattga 941  Q
    ||||||| ||||| ||||||| ||||||||||||  ||| ||||| ||| |||||||||||  ||||||||| ||||| |||||   ||||| |||| ||    
T  24878889 gaaaatgacattt-ttgggggtcaatttgttagcctgtaatttcaacaggctcatttaatgcagtcaacattagttgacttttatctttgcaagaatcga 24878791  T
Q  942 agtcttttc 950  Q
    |||||||||    
T  24878790 agtcttttc 24878782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 838 - 913
Target Start/End: Complemental strand, 17987988 - 17987914
Alignment:
Q  838 cgtcgaaaatggcatttcttggggggcaatttgttagctggtattttcaccagcctcatttaatgtggtcaacatt 913  Q
    |||||||||||| |||| |||||||||| |||||||||| ||| ||||  ||| |||||||||| |||||||||||    
T  17987988 cgtcgaaaatgggattt-ttggggggcattttgttagcttgtaatttcgacaggctcatttaatatggtcaacatt 17987914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 915 - 966
Target Start/End: Complemental strand, 20713647 - 20713596
Alignment:
Q  915 gttgatttttactcttgcaggaattgaagtcttttcttcaatcaaaggagtt 966  Q
    ||||| ||||| ||||||||||||  ||||||||||||||||||||||||||    
T  20713647 gttgacttttattcttgcaggaatcaaagtcttttcttcaatcaaaggagtt 20713596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 838 - 948
Target Start/End: Complemental strand, 22011588 - 22011479
Alignment:
Q  838 cgtcgaaaatggcatttcttggggggcaatttgttagctggtattttcaccagcctcatttaatgtggtcaaca-ttggttga-tttttactcttgcagg 935  Q
    ||||||||||||||||| |  ||||||| ||||||||   ||| ||||| |||  ||||||||||||||||||| |||||||| |||||||| |||||||    
T  22011588 cgtcgaaaatggcattttt--gggggcagtttgttagtctgtaatttcaacagattcatttaatgtggtcaacatttggttgactttttact-ttgcagg 22011492  T
Q  936 aattgaagtcttt 948  Q
    ||| |||| ||||    
T  22011491 aatcgaaggcttt 22011479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 78; Significance: 8e-36; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 78; E-Value: 8e-36
Query Start/End: Original strand, 868 - 977
Target Start/End: Complemental strand, 11362160 - 11362051
Alignment:
Q  868 ttgttagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtcttttcttcaatcaaaggagttt 967  Q
    ||||||||||||||||||||||||||||||||| |||||||||||| ||||| ||||||||||||||| |||||||||||||||||||   |||||||||    
T  11362160 ttgttagctggtattttcaccagcctcatttaaagtggtcaacattagttgacttttactcttgcaggtattgaagtcttttcttcaacttaaggagttt 11362061  T
Q  968 caaagagatg 977  Q
    ||| ||||||    
T  11362060 caacgagatg 11362051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 835 - 913
Target Start/End: Complemental strand, 10071078 - 10071001
Alignment:
Q  835 ttccgtcgaaaatggcatttcttggggggcaatttgttagctggtattttcaccagcctcatttaatgtggtcaacatt 913  Q
    ||||||||||||| |||||| |||||||| | |||||||||  ||| ||||  ||| |||||||||| |||||||||||    
T  10071078 ttccgtcgaaaattgcattt-ttggggggaattttgttagcctgtaatttcgacaggctcatttaatatggtcaacatt 10071001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 74; Significance: 2e-33; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 868 - 977
Target Start/End: Original strand, 23539981 - 23540090
Alignment:
Q  868 ttgttagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtcttttcttcaatcaaaggagttt 967  Q
    ||||||||| ||||| |||||||||||||||||||||||||| ||| ||||| |||||||||||||| | ||||||||||||||||||||||||||||||    
T  23539981 ttgttagctcgtattgtcaccagcctcatttaatgtggtcaatattagttgacttttactcttgcagtatttgaagtcttttcttcaatcaaaggagttt 23540080  T
Q  968 caaagagatg 977  Q
    | | ||||||    
T  23540081 cgacgagatg 23540090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 757 - 967
Target Start/End: Complemental strand, 28371705 - 28371496
Alignment:
Q  757 aagtcatgataattgtgacatcatgctttgaaatacttagcgttttctcaaaaatgtcaattctctccgttgattatattccgtcgaaaatggcatttct 856  Q
    |||||||||| |  |||||||||||||||| ||||| ||| ||||||||||||||||||||||||||  |||| | ||||| |||||||||  ||||| |    
T  28371705 aagtcatgattagagtgacatcatgctttggaatacatagagttttctcaaaaatgtcaattctctcttttgaatgtattcagtcgaaaataacattt-t 28371607  T
Q  857 tggggggcaatttgttagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtcttttcttcaat 956  Q
    | || ||||||||||||| |||||||||||| ||| | ||||||||||| ||| ||| ||||| ||||| ||| | |||||| |||  |||| | ||| |    
T  28371606 ttggtggcaatttgttagttggtattttcactagcataatttaatgtggccaatattagttgacttttattctggtaggaatcgaaacctttccctcagt 28371507  T
Q  957 caaaggagttt 967  Q
     ||||||||||    
T  28371506 taaaggagttt 28371496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 871 - 949
Target Start/End: Complemental strand, 10662187 - 10662109
Alignment:
Q  871 ttagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtctttt 949  Q
    ||||||| || ||||||||| |||||||||||||||||||||| ||||| |||||||||||||||| | ||||||||||    
T  10662187 ttagctgataatttcaccagactcatttaatgtggtcaacattagttgacttttactcttgcaggactcgaagtctttt 10662109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 772 - 949
Target Start/End: Complemental strand, 16601159 - 16600980
Alignment:
Q  772 tgacatcatgctttgaaatacttag--cgttttctcaaaaatgtcaattctctccgttgat-tatattccgtcgaaaatggcatttcttggggggcaatt 868  Q
    ||||||||||||||||||| ||| |  |||||| |||||||||||||||| |||| | ||  | | ||| |||||||||| ||||| ||| ||| |||||    
T  16601159 tgacatcatgctttgaaatgcttgggacgtttt-tcaaaaatgtcaattccctccttcgaaattttttcagtcgaaaatgacattttttgaggg-caatt 16601062  T
Q  869 tgttagctggtattttcaccagcctcatttaatgtggtcaacattggttga-tttttactcttgcaggaattgaagtctttt 949  Q
    | |||||  ||| ||||| ||| |||||||||||  ||||||||| ||||| ||||||   |||||||||||||||| ||||    
T  16601061 tattagcctgtaatttcaacagactcatttaatgcagtcaacattagttgactttttatctttgcaggaattgaagtatttt 16600980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 70; Significance: 5e-31; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 70; E-Value: 5e-31
Query Start/End: Original strand, 856 - 949
Target Start/End: Complemental strand, 2545864 - 2545771
Alignment:
Q  856 ttggggggcaatttgttagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtctttt 949  Q
    ||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||  |||| |||||||||||||||||| ||||||||||    
T  2545864 ttgggaggcaatttgttagctggtaatttcaccagcctcatttaatgtggtcaacattacttgacttttactcttgcaggaatcgaagtctttt 2545771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 871 - 977
Target Start/End: Original strand, 14986744 - 14986846
Alignment:
Q  871 ttagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagt-cttttcttcaatcaaaggagtttca 969  Q
    |||||||||||||||||||||||||||     ||||||||||| ||||| ||||||||||||||||||  ||||  |||||| |||| |||| |||||||    
T  14986744 ttagctggtattttcaccagcctcatt-----tggtcaacattagttgacttttactcttgcaggaatccaagtatttttctccaataaaagaagtttca 14986838  T
Q  970 aagagatg 977  Q
    | ||||||    
T  14986839 acgagatg 14986846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 871 - 977
Target Start/End: Original strand, 15416355 - 15416457
Alignment:
Q  871 ttagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagt-cttttcttcaatcaaaggagtttca 969  Q
    |||||||||||||||||||||||||||     ||||||||||| ||||| ||||||||||||||||||  ||||  |||||| |||| |||| |||||||    
T  15416355 ttagctggtattttcaccagcctcatt-----tggtcaacattagttgacttttactcttgcaggaatccaagtatttttctccaataaaagaagtttca 15416449  T
Q  970 aagagatg 977  Q
    | ||||||    
T  15416450 acgagatg 15416457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 869 - 966
Target Start/End: Original strand, 4173104 - 4173201
Alignment:
Q  869 tgttagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtcttttcttcaatcaaaggagtt 966  Q
    |||||||||||||||||||| |||| |||||||||| |||||||| ||||| || || | ||||||| ||  |||| ||| ||||||||||| |||||    
T  4173104 tgttagctggtattttcacctgccttatttaatgtgttcaacattagttgacttataattttgcaggtatcaaagtatttccttcaatcaaaagagtt 4173201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 868 - 977
Target Start/End: Complemental strand, 20146371 - 20146262
Alignment:
Q  868 ttgttagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtcttttcttcaatcaaaggagttt 967  Q
    ||||||| ||||||||||| |||| | || |||||||||||||||| ||||| ||||||| ||  |||||| ||||  ||| ||||  | ||||||||||    
T  20146371 ttgttagatggtattttcatcagcgttatgtaatgtggtcaacattagttgacttttactgttaaaggaatcgaagcttttccttctgttaaaggagttt 20146272  T
Q  968 caaagagatg 977  Q
    ||| ||||||    
T  20146271 caacgagatg 20146262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 867 - 903
Target Start/End: Complemental strand, 2563233 - 2563197
Alignment:
Q  867 tttgttagctggtattttcaccagcctcatttaatgt 903  Q
    |||||||||||||| ||||||||||||||||||||||    
T  2563233 tttgttagctggtaatttcaccagcctcatttaatgt 2563197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 62; Significance: 3e-26; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 757 - 950
Target Start/End: Original strand, 22619579 - 22619770
Alignment:
Q  757 aagtcatgataattgtgacatcatgctttgaaatacttagcgttttctcaaaaatgtcaattctctccgttgattatattccgtcgaaaatggcatttct 856  Q
    |||||||||| | | ||||||||||||||||||||||||  ||||| |||||| |  ||||| ||||| | || | ||||| |||||||||| ||||| |    
T  22619579 aagtcatgattaatatgacatcatgctttgaaatacttatagtttt-tcaaaattaccaattatctccttcgaatgtattcagtcgaaaatgacattt-t 22619676  T
Q  857 tggggggcaatttgttagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtcttttc 950  Q
    |||| ||||||||||||||   ||||| ||  || |||||||||||||||||||||| ||||| |||||   |||||||||| |||||||||||    
T  22619677 tgggaggcaatttgttagcctatatttccaaaaggctcatttaatgtggtcaacattagttgacttttatctttgcaggaatcgaagtcttttc 22619770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 869 - 977
Target Start/End: Original strand, 11013493 - 11013601
Alignment:
Q  869 tgttagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtcttttcttcaatcaaaggagtttc 968  Q
    |||||||||||| ||||| |||||||||||||||||||||||||| | | | |||||||||||||||||| ||||||||||||||||   ||||||||||    
T  11013493 tgttagctggtaatttcatcagcctcatttaatgtggtcaacattagcttacttttactcttgcaggaatcgaagtcttttcttcaacttaaggagtttc 11013592  T
Q  969 aaagagatg 977  Q
     | ||||||    
T  11013593 gacgagatg 11013601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 872 - 977
Target Start/End: Complemental strand, 20146686 - 20146581
Alignment:
Q  872 tagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtcttttcttcaatcaaaggagtttcaaa 971  Q
    |||||||||| |||||||| |||||||||||||| ||||||| ||| | | |||||||||||||||| ||||||||||  ||||||  ||||||||| |     
T  20146686 tagctggtatattcaccagtctcatttaatgtggccaacattagttaactattactcttgcaggaatcgaagtcttttactcaatcgtaggagtttcgac 20146587  T
Q  972 gagatg 977  Q
    ||||||    
T  20146586 gagatg 20146581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 868 - 950
Target Start/End: Complemental strand, 17615766 - 17615684
Alignment:
Q  868 ttgttagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtcttttc 950  Q
    ||||||||  ||| ||||| ||| ||||||||||| |||||||||| ||||| |||||   |||||||||| ||| |||||||    
T  17615766 ttgttagcatgtaatttcaacagactcatttaatgcggtcaacattagttgacttttatctttgcaggaatcgaaatcttttc 17615684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 58; Significance: 7e-24; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 772 - 925
Target Start/End: Original strand, 373696 - 373847
Alignment:
Q  772 tgacatcatgctttgaaatacttagcgttttctcaaaaatgtcaattctctccgttgattatattccgtcgaaaatggcatttcttggggggcaatttgt 871  Q
    ||||||||||||||||||||||||| ||||| ||||||||| ||||||||| | |  |  |  ||  |||||||||||| ||| ||||||||||||||||    
T  373696 tgacatcatgctttgaaatacttagagtttt-tcaaaaatgacaattctcttcttcaaaaaatttaagtcgaaaatggctttt-ttggggggcaatttgt 373793  T
Q  872 tagctggtattttcaccagcctcatttaatgtggtcaacattggttgattttta 925  Q
    ||| ||||  ||| |||| ||||||||||||||||||||||| ||||| |||||    
T  373794 tagttggttattttaccaacctcatttaatgtggtcaacattagttgactttta 373847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0795 (Bit Score: 53; Significance: 7e-21; HSPs: 1)
Name: scaffold0795
Description:

Target: scaffold0795; HSP #1
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 869 - 977
Target Start/End: Original strand, 5725 - 5833
Alignment:
Q  869 tgttagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtcttttcttcaatcaaaggagtttc 968  Q
    |||||||||||||||| |||| |||||||||||| |||||||||| | ||| ||||  |||||||||||| |||| |||||| ||| | |||||||||||    
T  5725 tgttagctggtatttttaccaacctcatttaatgcggtcaacattaggtgactttttttcttgcaggaatcgaagccttttcctcagttaaaggagtttc 5824  T
Q  969 aaagagatg 977  Q
    || ||||||    
T  5825 aacgagatg 5833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0555 (Bit Score: 49; Significance: 2e-18; HSPs: 1)
Name: scaffold0555
Description:

Target: scaffold0555; HSP #1
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 876 - 956
Target Start/End: Original strand, 5337 - 5417
Alignment:
Q  876 tggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtcttttcttcaat 956  Q
    |||||||||||||||||||||||| |||||||||| || ||||| ||||||||||||||| || ||||| ||||| |||||    
T  5337 tggtattttcaccagcctcatttattgtggtcaactttagttgacttttactcttgcaggtatcgaagttttttcatcaat 5417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0161 (Bit Score: 43; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0161
Description:

Target: scaffold0161; HSP #1
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 876 - 977
Target Start/End: Complemental strand, 5388 - 5287
Alignment:
Q  876 tggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactctt-gcaggaattgaagtcttttcttcaatcaaaggagtttcaaagag 974  Q
    ||||| |||||||||| ||||||||||||||||||||| ||||| ||||| |||| ||||||||  |||||||||||||||   |||||| ||||| |||    
T  5388 tggtaatttcaccagcatcatttaatgtggtcaacattagttgactttta-tcttcgcaggaatcaaagtcttttcttcaacttaaggagcttcaacgag 5290  T
Q  975 atg 977  Q
    |||    
T  5289 atg 5287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University