View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5071_high_11 (Length: 360)
Name: NF5071_high_11
Description: NF5071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5071_high_11 |
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| [»] chr2 (3 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 288; Significance: 1e-161; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 17 - 360
Target Start/End: Complemental strand, 10943649 - 10943306
Alignment:
| Q |
17 |
aaaaaggtcacaaaactatagcaactttgaaaaggaccctaacttaggcaaggtacaaataaccactagttccgactaaagaatgttatatctcttgttc |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
10943649 |
aaaaaggtcacaaaactatagcaactttgaaaaggaccctaactcaggcaaggtacaaataaccactagttccgactaaagaatgttatatcacttgttc |
10943550 |
T |
|
| Q |
117 |
aaaaattgtggacaccattggcattcacccatgcaaccaagacgcaatcgcagaaaacacatactagattagaggcattnnnnnnnnctgcaagaaacag |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| ||||||||||||| |
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| T |
10943549 |
aaaaattgtggacaccattggcattcacccatgcaaccaatacgcaatcgcagaaaacacatactagattagtggcattaaaaaaaactgcaagaaacag |
10943450 |
T |
|
| Q |
217 |
catcaaaaaatgcattcaacaacatcaaataaattgctagatataacatgatcaacaactcatttagaataaagggtgaagtccacattgttgaattgga |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | |
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| T |
10943449 |
catcaaaaaatgcattcaacaacatcaaataaattgctagatataacatgatcaacaactcatttagaataaagggcgaagtccacattgttgaattgaa |
10943350 |
T |
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| Q |
317 |
ggtctagcatccattgcagagctgtgtgtaaagctacgacctcc |
360 |
Q |
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|||||| || |||||||||||||||||||||||||||||||||| |
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| T |
10943349 |
ggtctaacacccattgcagagctgtgtgtaaagctacgacctcc |
10943306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 17 - 360
Target Start/End: Complemental strand, 10949518 - 10949175
Alignment:
| Q |
17 |
aaaaaggtcacaaaactatagcaactttgaaaaggaccctaacttaggcaaggtacaaataaccactagttccgactaaagaatgttatatctcttgttc |
116 |
Q |
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| T |
10949518 |
aaaaaggtcacaaaactatagcaactttgaaaaggaccctaactcaggcaaggtacaaataaccactagttccgactaaagaatgttatatcacttgttc |
10949419 |
T |
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| Q |
117 |
aaaaattgtggacaccattggcattcacccatgcaaccaagacgcaatcgcagaaaacacatactagattagaggcattnnnnnnnnctgcaagaaacag |
216 |
Q |
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| T |
10949418 |
aaaaattgtggacaccattggcattcacccatgcaaccaatacgcaatcgcagaaaacacatactagattagtggcattaaaaaaaactgcaagaaacag |
10949319 |
T |
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| Q |
217 |
catcaaaaaatgcattcaacaacatcaaataaattgctagatataacatgatcaacaactcatttagaataaagggtgaagtccacattgttgaattgga |
316 |
Q |
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| T |
10949318 |
catcaaaaaatgcattcaacaacatcaaataaattgctagatataacatgatcaacaactcatttagaataaagggcgaagtccacattgttgaattgaa |
10949219 |
T |
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| Q |
317 |
ggtctagcatccattgcagagctgtgtgtaaagctacgacctcc |
360 |
Q |
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|||||| || |||||||||||||||||||||||||||||||||| |
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| T |
10949218 |
ggtctaacacccattgcagagctgtgtgtaaagctacgacctcc |
10949175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 44 - 262
Target Start/End: Complemental strand, 10919750 - 10919535
Alignment:
| Q |
44 |
tgaaaaggaccctaacttaggcaaggtacaaataaccactagttccgactaaagaatgttatatctcttgttcaaaaattgtggacaccattggca-ttc |
142 |
Q |
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|||||||||| |||||| |||||||||| ||||||||||| ||| |||||| ||||||||||||| || ||||||||||||||||||||||||||| ||| |
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| T |
10919750 |
tgaaaaggactctaactcaggcaaggtataaataaccactggtttcgactacagaatgttatatcactagttcaaaaattgtggacaccattggcaattc |
10919651 |
T |
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| Q |
143 |
acccatgcaaccaagacgcaatcgcagaaaacacatactagattagaggcattnnnnnnnnctgcaagaaacagcatcaaaaaatgcattcaacaacatc |
242 |
Q |
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||| |||||||||| ||||||||||| |||| |||||||||||||||||||| |||||||||||||||| ||||||||||||||| |||||| |
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| T |
10919650 |
acc-atgcaaccaaaacgcaatcgcacaaaagacatactagattagaggcat--aaaaaaactgcaagaaacagcat-aaaaaatgcattcaataacatc |
10919555 |
T |
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| Q |
243 |
aaataaattgctagatataa |
262 |
Q |
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||||||||| | |||||||| |
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| T |
10919554 |
aaataaattaccagatataa |
10919535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 260 - 360
Target Start/End: Original strand, 31957171 - 31957271
Alignment:
| Q |
260 |
taacatgatcaacaactcatttagaataaagggtgaagtccacattgttgaattggaggtctagcatccattgcagagctgtgtgtaaagctacgacctc |
359 |
Q |
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|||| |||||||||||| |||||||| |||| ||||||||||||| |||||| ||||||| || |||||| |||||||||| |||| ||| |||||| |
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| T |
31957171 |
taacgtgatcaacaactgttttagaatcaaggacaaagtccacattgtcgaattgaaggtctaacacccattgtagagctgtgtataaacctatgacctc |
31957270 |
T |
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| Q |
360 |
c |
360 |
Q |
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| T |
31957271 |
c |
31957271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 260 - 348
Target Start/End: Original strand, 1479409 - 1479497
Alignment:
| Q |
260 |
taacatgatcaacaactcatttagaataaagggtgaagtccacattgttgaattggaggtctagcatccattgcagagctgtgtgtaaa |
348 |
Q |
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|||||||||||||||||| |||||||| || | ||||||||| |||| |||||| |||||| ||||||||||||| |||||||||| |
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| T |
1479409 |
taacatgatcaacaactcttttagaatctagagcgaagtccacgttgtcgaattgaaggtctgagatccattgcagagttgtgtgtaaa |
1479497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 260 - 345
Target Start/End: Complemental strand, 1311037 - 1310952
Alignment:
| Q |
260 |
taacatgatcaacaactcatttagaataaagggtgaagtccacattgttgaattggaggtctagcatccattgcagagctgtgtgt |
345 |
Q |
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|||||||||||||||||| |||||||| || || ||| ||||| ||||| ||||| ||||||| || ||||| |||||||||||| |
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| T |
1311037 |
taacatgatcaacaactcgtttagaatcaaaggcgaaatccacgttgttaaattgaaggtctaacactcattggagagctgtgtgt |
1310952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 260 - 314
Target Start/End: Original strand, 49407252 - 49407306
Alignment:
| Q |
260 |
taacatgatcaacaactcatttagaataaagggtgaagtccacattgttgaattg |
314 |
Q |
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||||||||| |||||||| |||||||| || | ||||||||||||||||||||| |
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| T |
49407252 |
taacatgattaacaactcttttagaatccagtgcgaagtccacattgttgaattg |
49407306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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