View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5071_high_13 (Length: 347)
Name: NF5071_high_13
Description: NF5071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5071_high_13 |
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Alignment Details
Target: chr2 (Bit Score: 294; Significance: 1e-165; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 10 - 346
Target Start/End: Complemental strand, 13945445 - 13945106
Alignment:
| Q |
10 |
tttcttattgacactttgttcaaaatatagcaagaagtgttgatgctt---gcccaaaaatatttttcaatatttagaatgatggatgcttctccaagtg |
106 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
13945445 |
tttcttatcgacactttgttcaaaatatagcaagaagtgttgatgctttctgcccaaaaatatttttcaatatttagaatgatggatggttctccaagtg |
13945346 |
T |
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| Q |
107 |
cagcttggttgtgatcctaatctgctatgaatgacatcagttgttggatattagttcgccttatatacttgactaataagagattatgtattaacatgga |
206 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13945345 |
tagcttggttgtgatcctaatctgctatgaatgacatcagttgttggatattagttcgccttatatacttgactaataagagattatgtattaacatgga |
13945246 |
T |
|
| Q |
207 |
gtctccaaacttattttgctagcattgcttcgttgaacatccttaagtttttgaaacttaaacctccctcaaatttaggtttaaagagagtttccttctt |
306 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
13945245 |
gtctccaaacttattttgctagcattgcttcgttgaacatccttaagtttttgaaacctaaacctccctcaaatttaggtttaaagagagtttccttctt |
13945146 |
T |
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| Q |
307 |
ggttcaacgaatcttcgtgtggtcccctttgcttctccac |
346 |
Q |
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||||||| |||||||| |||| ||||||||||||| |||| |
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| T |
13945145 |
ggttcaatgaatcttcctgtgatcccctttgcttccccac |
13945106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 10 - 346
Target Start/End: Complemental strand, 14086634 - 14086295
Alignment:
| Q |
10 |
tttcttattgacactttgttcaaaatatagcaagaagtgttgatgctt---gcccaaaaatatttttcaatatttagaatgatggatgcttctccaagtg |
106 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
14086634 |
tttcttatcgacactttgttcaaaatatagcaagaagtgttgatgctttctgcccaaaaatatttttcaatatttagaatgatggatggttctccaagtg |
14086535 |
T |
|
| Q |
107 |
cagcttggttgtgatcctaatctgctatgaatgacatcagttgttggatattagttcgccttatatacttgactaataagagattatgtattaacatgga |
206 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14086534 |
tagcttggttgtgatcctaatctgctatgaatgacatcagttgttggatattagttcgccttatatacttgactaataagagattatgtattaacatgga |
14086435 |
T |
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| Q |
207 |
gtctccaaacttattttgctagcattgcttcgttgaacatccttaagtttttgaaacttaaacctccctcaaatttaggtttaaagagagtttccttctt |
306 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
14086434 |
gtctccaaacttattttgctagcattgcttcgttgaacatccttaagtttttgaaacctaaacctccctcaaatttaggtttaaagagagtttccttctt |
14086335 |
T |
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| Q |
307 |
ggttcaacgaatcttcgtgtggtcccctttgcttctccac |
346 |
Q |
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||||||| |||||||| |||| ||||||||||||| |||| |
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| T |
14086334 |
ggttcaatgaatcttcctgtgatcccctttgcttccccac |
14086295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 22 - 54
Target Start/End: Original strand, 23915162 - 23915194
Alignment:
| Q |
22 |
actttgttcaaaatatagcaagaagtgttgatg |
54 |
Q |
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||||||| ||||||||||||||||||||||||| |
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| T |
23915162 |
actttgtccaaaatatagcaagaagtgttgatg |
23915194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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