View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5071_high_17 (Length: 318)
Name: NF5071_high_17
Description: NF5071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5071_high_17 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 285; Significance: 1e-160; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 1 - 318
Target Start/End: Complemental strand, 3629576 - 3629259
Alignment:
| Q |
1 |
ccaacaatggccaaactcaccaccacttcaaatttcctcaaatcacttcactctttctccttcctcagattcacttctcctttctcctttccaggtacac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3629576 |
ccaacaatggccaaactcaccaccacttcaaatttcctcaaatcacttcactctttctccttcctcagattcacttctcctttctcctttccaggtacac |
3629477 |
T |
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| Q |
101 |
actttacttagcatttccccttataaatcacaacactaacaaaaacactcagctatcatattcnnnnnnncaggtaaacatcattctcaacacacgttgg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
3629476 |
actttacttagcatttccccttataaatcacaacactaacaaaaacactcagctatcatattctttttttcaggtaaacatcattctcaacacacgttgg |
3629377 |
T |
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| Q |
201 |
caacagaactagcttcattaatcgaagaaccctcttcttcacccacccctaaacccgaaacccgtatgcaactcaaacgctttcttgaactctgaatcaa |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| |
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| T |
3629376 |
caacagaactagcttcattaatcgaagaaccctcttcttcacccacccctaaacccgaaacccgtatgcaactcaaacggtttcttgaactccgaatcaa |
3629277 |
T |
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| Q |
301 |
aaaacgggccaaatctca |
318 |
Q |
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|||||||| ||||||||| |
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| T |
3629276 |
aaaacgggtcaaatctca |
3629259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 54
Target Start/End: Complemental strand, 22513240 - 22513203
Alignment:
| Q |
17 |
tcaccaccacttcaaatttcctcaaatcacttcactct |
54 |
Q |
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||||||||||||||| ||||||||||| |||||||||| |
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| T |
22513240 |
tcaccaccacttcaagtttcctcaaataacttcactct |
22513203 |
T |
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