View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5071_high_18 (Length: 308)
Name: NF5071_high_18
Description: NF5071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5071_high_18 |
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Alignment Details
Target: chr7 (Bit Score: 285; Significance: 1e-160; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 16 - 304
Target Start/End: Complemental strand, 38937191 - 38936903
Alignment:
| Q |
16 |
tcaccaataacttctcaggtaacatttccagagactttggaaagaatagtccttctttgactcatgtctacttttcaaacaatagtttctcaggagaact |
115 |
Q |
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| T |
38937191 |
tcaccaataacttctcaggtaacatttccagagactttggaaagaatagtccttctttgactcatgtctacttttcaaacaatagtttctcaggagaact |
38937092 |
T |
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| Q |
116 |
tccttctgacatgtgcaatggcctaaaactacttgttttggcagtaaataacaacagcttttcagggtcattgccgaaatctttgagaaattgttcatct |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38937091 |
tccttctgacatgtgcaatggcctaaaactacttgttttggcagtaaataacaacagcttttcagggtcattgccgaaatctttgagaaattgttcatct |
38936992 |
T |
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| Q |
216 |
tttataagaattaggcttgacgataaccagttcaatggaaatatcacagaagcatttgggattcatccaaatcttagtttcatctcact |
304 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38936991 |
tttataagaattaggcttgatgataaccagttcaatggaaatatcacagaagcatttgggattcatccaaatcttagtttcatctcact |
38936903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 16 - 301
Target Start/End: Original strand, 39305761 - 39306046
Alignment:
| Q |
16 |
tcaccaataacttctcaggtaacatttccagagactttggaaagaatagtccttctttgactcatgtctacttttcaaacaatagtttctcaggagaact |
115 |
Q |
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||||||||||||||||||| | |||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39305761 |
tcaccaataacttctcaggaagcatttccagagattttggaaagaacagtccttctttgactcatgtctacttttcaaacaatagtttctcaggagaact |
39305860 |
T |
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| Q |
116 |
tccttctgacatgtgcaatggcctaaaactacttgttttggcagtaaataacaacagcttttcagggtcattgccgaaatctttgagaaattgttcatct |
215 |
Q |
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||||||||| | |||| ||||| || ||| |||||||||| ||||||||||||||||||||||| |||||||| || || ||||||||||||||||| |
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| T |
39305861 |
tccttctgaattatgcagtggccacaatctagttgttttggccgtaaataacaacagcttttcaggatcattgccaaactccttgagaaattgttcatcc |
39305960 |
T |
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| Q |
216 |
tttataagaattaggcttgacgataaccagttcaatggaaatatcacagaagcatttgggattcatccaaatcttagtttcatctc |
301 |
Q |
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|| | |||| |||||||||| |||||| |||||| |||||| ||||||||| |||||||||||||| ||||||||| ||||||||| |
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| T |
39305961 |
ttaacaagagttaggcttgatgataacaagttcagtggaaacatcacagaatcatttgggattcatacaaatcttattttcatctc |
39306046 |
T |
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