View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5071_high_20 (Length: 297)
Name: NF5071_high_20
Description: NF5071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5071_high_20 |
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Alignment Details
Target: chr2 (Bit Score: 209; Significance: 1e-114; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 279
Target Start/End: Complemental strand, 33802451 - 33802176
Alignment:
| Q |
1 |
tccatgtagcaactaaaacatgggaacaaagcattggtttttatcctaggttggtgttggtcttttcatctccaccctattgatcatgtccaagccgtgt |
100 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
33802451 |
tccatgtagcaactaaaacatgggaacaaaacattggtttttatcctatgttgttgttggtcttttcatctccaccctattgatcatgtccaaaccgtgt |
33802352 |
T |
|
| Q |
101 |
ttatgtgatattcaatatattggcacaatctcacctgggatggaaggttctccaacgagttttattattgacgaaaattcgaagttccttgtctcaaaga |
200 |
Q |
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| T |
33802351 |
ttatgtgatattcaatatattggcacaatctcacctgggatggaagcttctccaatgagtt---ttattgacgaaaagtcgaagttcctcgtctcaaagg |
33802255 |
T |
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| Q |
201 |
atagaaattttgcttttggttttgtcaccacctttaatggcaacaccaagtttctattagcaatcgtccacatggctag |
279 |
Q |
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| T |
33802254 |
atagaaattttgtttttggttttgtcaccaccgtaaacgacaacaccaagtttctattagcaatcgtccacatggctag |
33802176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 279
Target Start/End: Complemental strand, 33806933 - 33806658
Alignment:
| Q |
1 |
tccatgtagcaactaaaacatgggaacaaagcattggtttttatcctaggttggtgttggtcttttcatctccaccctattgatcatgtccaagccgtgt |
100 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
33806933 |
tccatgtagcaactaaaacatgggaacaaaacattggtttttatcctatgttgttgttggtcttttcatctccaccctattgatcatgtccaaaccgtgt |
33806834 |
T |
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| Q |
101 |
ttatgtgatattcaatatattggcacaatctcacctgggatggaaggttctccaacgagttttattattgacgaaaattcgaagttccttgtctcaaaga |
200 |
Q |
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| T |
33806833 |
ttatgtgatattcaatatattggcacaatctcacctgggatggaagcttctccaatgagtt---ttattgacgaaaagtcgaagttcctcgtctcaaagg |
33806737 |
T |
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| Q |
201 |
atagaaattttgcttttggttttgtcaccacctttaatggcaacaccaagtttctattagcaatcgtccacatggctag |
279 |
Q |
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| T |
33806736 |
atagaaattttgtttttggttttgtcaccaccgtaaacgacaacaccaagtttctattagcaatcgtccacatggctag |
33806658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 35 - 271
Target Start/End: Original strand, 33811405 - 33811638
Alignment:
| Q |
35 |
tggtttttatcctaggttggtgttggtcttttcatctccaccctattgatcatgtccaagccgtgtttatgtgatattcaatatattggcacaatctcac |
134 |
Q |
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| T |
33811405 |
tggtttttatcctatgttgttgttggtctttccatctccaccctactgatcatgtccaaactgtgtttatgtgatattcaatatattggcacaatctcac |
33811504 |
T |
|
| Q |
135 |
ctgggatggaaggttctccaacgagttttattattgacgaaaattcgaagttccttgtctcaaagaatagaaattttgcttttggttttgtcaccacctt |
234 |
Q |
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| T |
33811505 |
ctgggatggagggttctcaagcgaatt---ttattgacgaaggctcgaagttccttgtctcaaagaatagaaattttgcttttggttttgtcaccaccgt |
33811601 |
T |
|
| Q |
235 |
taatggcaacaccaagtttctattagcaatcgtccac |
271 |
Q |
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||||| || ||||||||||||||||| |||||||||| |
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| T |
33811602 |
taatgacaccaccaagtttctattagtaatcgtccac |
33811638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 6 - 279
Target Start/End: Original strand, 31027050 - 31027320
Alignment:
| Q |
6 |
gtagcaactaaaacatgggaacaaagcattggtttttatcctaggttggtgttggtcttttcatctccaccctattgatcatgtccaagccgtgtttatg |
105 |
Q |
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|||| |||||||||||||||||| | ||||||||||| || | |||| | || ||| | |||||||| ||| ||| |||||||||| | |||||| || |
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| T |
31027050 |
gtaggaactaaaacatgggaacacaacattggtttttttcgaatgttgtttatgttctgtccatctccatcctcttggtcatgtccaaactgtgtttgtg |
31027149 |
T |
|
| Q |
106 |
tgatattcaatatattggcacaatctcacctgggatggaaggttctccaacgagttttattattgacgaaaattcgaagttccttgtctcaaagaataga |
205 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||| ||| | || | || ||| || | | |||||||| |||||||||||||| |
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| T |
31027150 |
tgatattcaatatattggcacaatctcaccagggatggaaggttctcaaacaaatt---tcatcgacaaagacttcaagttcctcctctcaaagaataga |
31027246 |
T |
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| Q |
206 |
aattttgcttttggttttgtcaccacctttaatggcaacaccaagtttctattagcaatcgtccacatggctag |
279 |
Q |
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|||||||||||||||||| | || | |||| || |||||||||| || | ||||||||||||| |||||| |
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| T |
31027247 |
gtttttgcttttggttttgttgctgccgtcaatgacaccaccaagtttttactggcaatcgtccacacggctag |
31027320 |
T |
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