View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5071_high_24 (Length: 252)

Name: NF5071_high_24
Description: NF5071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5071_high_24
NF5071_high_24
[»] chr6 (5 HSPs)
chr6 (93-190)||(31555830-31555927)
chr6 (110-188)||(9350930-9351009)
chr6 (146-185)||(33960079-33960118)
chr6 (146-188)||(6337860-6337902)
chr6 (142-188)||(6938183-6938229)
[»] chr1 (11 HSPs)
chr1 (112-188)||(2501707-2501783)
chr1 (144-188)||(22580002-22580046)
chr1 (146-183)||(10786355-10786392)
chr1 (122-185)||(20415106-20415170)
chr1 (140-188)||(29512138-29512186)
chr1 (119-187)||(32888387-32888455)
chr1 (93-188)||(13796950-13797045)
chr1 (114-167)||(2465464-2465518)
chr1 (146-188)||(35949530-35949572)
chr1 (146-188)||(48796673-48796715)
chr1 (144-188)||(48662793-48662837)
[»] chr8 (8 HSPs)
chr8 (93-188)||(29528066-29528161)
chr8 (117-188)||(43239317-43239388)
chr8 (125-188)||(43511327-43511390)
chr8 (116-188)||(25178859-25178932)
chr8 (122-185)||(20216346-20216410)
chr8 (122-185)||(20235944-20236008)
chr8 (113-185)||(42987649-42987721)
chr8 (108-188)||(7057739-7057819)
[»] chr2 (4 HSPs)
chr2 (103-188)||(12757897-12757982)
chr2 (119-188)||(4592098-4592167)
chr2 (146-188)||(35005394-35005436)
chr2 (108-188)||(667864-667944)
[»] scaffold0602 (1 HSPs)
scaffold0602 (113-188)||(5143-5218)
[»] chr4 (10 HSPs)
chr4 (113-188)||(8644122-8644197)
chr4 (113-188)||(8614690-8614765)
chr4 (111-182)||(5798393-5798464)
chr4 (146-188)||(27790975-27791017)
chr4 (122-185)||(29405771-29405835)
chr4 (113-188)||(47106516-47106591)
chr4 (138-188)||(2073542-2073592)
chr4 (146-188)||(7262157-7262199)
chr4 (146-188)||(23349317-23349359)
chr4 (144-188)||(22829883-22829927)
[»] chr3 (12 HSPs)
chr3 (93-188)||(39143996-39144091)
chr3 (111-188)||(14418363-14418440)
chr3 (107-173)||(35203393-35203459)
chr3 (122-185)||(41410168-41410231)
chr3 (146-185)||(30247989-30248028)
chr3 (146-188)||(50622187-50622229)
chr3 (146-187)||(6083477-6083518)
chr3 (119-188)||(22845038-22845107)
chr3 (122-190)||(42096652-42096721)
chr3 (160-188)||(2150628-2150656)
chr3 (144-188)||(19454918-19454962)
chr3 (144-188)||(35688434-35688478)
[»] chr5 (7 HSPs)
chr5 (111-188)||(30911-30988)
chr5 (111-187)||(25828314-25828390)
chr5 (93-188)||(23141501-23141596)
chr5 (122-185)||(25694581-25694644)
chr5 (122-185)||(38309915-38309980)
chr5 (147-188)||(6311118-6311159)
chr5 (146-190)||(6277742-6277786)
[»] chr7 (9 HSPs)
chr7 (102-185)||(4912596-4912679)
chr7 (116-188)||(25309415-25309487)
chr7 (116-183)||(43223598-43223665)
chr7 (122-185)||(44300858-44300922)
chr7 (146-188)||(40855944-40855986)
chr7 (146-188)||(45112337-45112379)
chr7 (148-185)||(24430237-24430274)
chr7 (107-188)||(38398325-38398406)
chr7 (107-188)||(38400867-38400948)
[»] scaffold0472 (1 HSPs)
scaffold0472 (137-182)||(8014-8059)
[»] scaffold0249 (1 HSPs)
scaffold0249 (138-185)||(20172-20220)
[»] scaffold0160 (1 HSPs)
scaffold0160 (144-188)||(26053-26097)


Alignment Details
Target: chr6 (Bit Score: 86; Significance: 3e-41; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 93 - 190
Target Start/End: Original strand, 31555830 - 31555927
Alignment:
Q  93 acaataacaaatctctcttgctggtatacaatttttgaaggatgctttagatgttttttattttgttaaatactacgattcgtactattttatgagat 190  Q
    ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  31555830 acaataacaaatctctcttgctggtatacaatttttgaaagatgttttagatgttttttattttgttaaatactacgattcgtactattttataagat 31555927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 110 - 188
Target Start/End: Complemental strand, 9351009 - 9350930
Alignment:
Q  110 ttgctggtatacaatttttgaaggatgctttagatg-ttttttattttgttaaatactacgattcgtactattttatgag 188  Q
    ||||||||||||||||| ||||||||| ||| |||| ||||||||||| ||||||| ||| || ||||||||||||||||    
T  9351009 ttgctggtatacaatttctgaaggatgttttggatgtttttttattttattaaatattactatccgtactattttatgag 9350930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 146 - 185
Target Start/End: Original strand, 33960079 - 33960118
Alignment:
Q  146 ttttttattttgttaaatactacgattcgtactattttat 185  Q
    |||||||||| | |||||||||||||||||||||||||||    
T  33960079 ttttttatttggctaaatactacgattcgtactattttat 33960118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 188
Target Start/End: Original strand, 6337860 - 6337902
Alignment:
Q  146 ttttttattttgttaaatactacgattcgtactattttatgag 188  Q
    |||||||||| |||||||||||| |||| ||||||||||||||    
T  6337860 ttttttatttggttaaatactaccattcatactattttatgag 6337902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 188
Target Start/End: Complemental strand, 6938229 - 6938183
Alignment:
Q  142 gatgttttttattttgttaaatactacgattcgtactattttatgag 188  Q
    ||||||||| |||||  |||||||||||||||||| |||||||||||    
T  6938229 gatgtttttaattttactaaatactacgattcgtattattttatgag 6938183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 65; Significance: 1e-28; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 112 - 188
Target Start/End: Complemental strand, 2501783 - 2501707
Alignment:
Q  112 gctggtatacaatttttgaaggatgctttagatgttttttattttgttaaatactacgattcgtactattttatgag 188  Q
    ||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| |||||||||    
T  2501783 gctggtatacaatttttgaaggatgttttggatgttttttattttgttaaatactacgattcgtactcttttatgag 2501707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 144 - 188
Target Start/End: Original strand, 22580002 - 22580046
Alignment:
Q  144 tgttttttattttgttaaatactacgattcgtactattttatgag 188  Q
    ||||||||||||||||||||||||||||||||||||| |||||||    
T  22580002 tgttttttattttgttaaatactacgattcgtactatattatgag 22580046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 146 - 183
Target Start/End: Complemental strand, 10786392 - 10786355
Alignment:
Q  146 ttttttattttgttaaatactacgattcgtactatttt 183  Q
    ||||||||||||||||||||||||||||||||||||||    
T  10786392 ttttttattttgttaaatactacgattcgtactatttt 10786355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 122 - 185
Target Start/End: Complemental strand, 20415170 - 20415106
Alignment:
Q  122 aatttttgaaggatgctttagatgtttttt-attttgttaaatactacgattcgtactattttat 185  Q
    ||||||||||||||  ||| |||||||||| |||| | |||||||||||||||||||||||||||    
T  20415170 aatttttgaaggatattttggatgtttttttatttggctaaatactacgattcgtactattttat 20415106  T

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Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 140 - 188
Target Start/End: Original strand, 29512138 - 29512186
Alignment:
Q  140 tagatgttttttattttgttaaatactacgattcgtactattttatgag 188  Q
    ||||||||||||||||  ||||||||||| |||| ||||||||||||||    
T  29512138 tagatgttttttatttgattaaatactacaattcatactattttatgag 29512186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 119 - 187
Target Start/End: Complemental strand, 32888455 - 32888387
Alignment:
Q  119 tacaatttttgaaggatgctttagatgttttttattttgttaaatactacgattcgtactattttatga 187  Q
    |||||||||  ||||||  ||| ||||||||||||||   |||||||||| ||||||||||||||||||    
T  32888455 tacaattttctaaggatattttggatgttttttatttgcctaaatactacaattcgtactattttatga 32888387  T

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Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 93 - 188
Target Start/End: Original strand, 13796950 - 13797045
Alignment:
Q  93 acaataacaaatctctcttgctggtatacaatttttgaaggatgctttagatgttttttattttgttaaatactacgattcgtactattttatgag 188  Q
    |||||||||| ||  |||||| ||  |||||||||| | ||||  ||| ||||||||||||||   |||||||||| |||| ||||||||||||||    
T  13796950 acaataacaactccatcttgccggcgtacaattttttagggatattttggatgttttttatttgactaaatactacaattcatactattttatgag 13797045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 167
Target Start/End: Original strand, 2465464 - 2465518
Alignment:
Q  114 tggtatacaatttttgaaggatgctttagat-gttttttattttgttaaatacta 167  Q
    |||||||||||| |||||||||| ||| |||  ||||||||||||||||||||||    
T  2465464 tggtatacaattattgaaggatgttttggatatttttttattttgttaaatacta 2465518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 188
Target Start/End: Original strand, 35949530 - 35949572
Alignment:
Q  146 ttttttattttgttaaatactacgattcgtactattttatgag 188  Q
    |||||||||| |||||||||||| |||| ||||||||||||||    
T  35949530 ttttttatttggttaaatactaccattcatactattttatgag 35949572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 188
Target Start/End: Complemental strand, 48796715 - 48796673
Alignment:
Q  146 ttttttattttgttaaatactacgattcgtactattttatgag 188  Q
    |||||||||| |||||||||||| |||| ||||||||||||||    
T  48796715 ttttttatttggttaaatactaccattcatactattttatgag 48796673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 188
Target Start/End: Complemental strand, 48662837 - 48662793
Alignment:
Q  144 tgttttttattttgttaaatactacgattcgtactattttatgag 188  Q
    |||||||| ||||| ||||||||||||||| || |||||||||||    
T  48662837 tgtttttttttttgctaaatactacgattcatattattttatgag 48662793  T

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Target: chr8 (Bit Score: 64; Significance: 4e-28; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 93 - 188
Target Start/End: Original strand, 29528066 - 29528161
Alignment:
Q  93 acaataacaaatctctcttgctggtatacaatttttgaaggatgctttagatgttttttattttgttaaatactacgattcgtactattttatgag 188  Q
    ||||||||  ||| ||| |||||||||| ||||||||||||||| ||| ||||||||||||||||||||||| |||||||||||||||||||||||    
T  29528066 acaataaccgatccctcctgctggtatataatttttgaaggatgttttggatgttttttattttgttaaataatacgattcgtactattttatgag 29528161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 117 - 188
Target Start/End: Complemental strand, 43239388 - 43239317
Alignment:
Q  117 tatacaatttttgaaggatgctttagatgttttttattttgttaaatactacgattcgtactattttatgag 188  Q
    ||||||||||||| | |||| |||  ||||||||||||||||||||||| || |||||||||||||||||||    
T  43239388 tatacaatttttgtaagatgttttgaatgttttttattttgttaaataccacaattcgtactattttatgag 43239317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 125 - 188
Target Start/End: Complemental strand, 43511390 - 43511327
Alignment:
Q  125 ttttgaaggatgctttagatgttttttattttgttaaatactacgattcgtactattttatgag 188  Q
    |||||||||||| ||| |||||||||||||||||||||||||||||  | ||||||||||||||    
T  43511390 ttttgaaggatgttttggatgttttttattttgttaaatactacgaaccatactattttatgag 43511327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 116 - 188
Target Start/End: Original strand, 25178859 - 25178932
Alignment:
Q  116 gtatacaatttttgaaggatgctttagatg-ttttttattttgttaaatactacgattcgtactattttatgag 188  Q
    ||||||| ||||||||||||||||| |||| ||||||||||||||||||  |||||||| |  |||||||||||    
T  25178859 gtatacattttttgaaggatgctttggatgtttttttattttgttaaattttacgattcattttattttatgag 25178932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 122 - 185
Target Start/End: Complemental strand, 20216410 - 20216346
Alignment:
Q  122 aatttttgaaggatgctttagatgtttttt-attttgttaaatactacgattcgtactattttat 185  Q
    ||||||||||||||  ||| |||||||||| |||| | |||||||||||||||||||||||||||    
T  20216410 aatttttgaaggatattttggatgtttttttatttggctaaatactacgattcgtactattttat 20216346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 122 - 185
Target Start/End: Complemental strand, 20236008 - 20235944
Alignment:
Q  122 aatttttgaaggatgctttagatgtttttt-attttgttaaatactacgattcgtactattttat 185  Q
    ||||||||||||||  ||| |||||||||| |||| | |||||||||||||||||||||||||||    
T  20236008 aatttttgaaggatattttggatgtttttttatttggctaaatactacgattcgtactattttat 20235944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 113 - 185
Target Start/End: Original strand, 42987649 - 42987721
Alignment:
Q  113 ctggtatacaatttttgaaggatgctttagatgttttttattttgttaaatactacgattcgtactattttat 185  Q
    ||||| |||||||||| ||||||  |||||||||||||||||| | |||||| || ||| |||||||||||||    
T  42987649 ctggtgtacaattttttaaggatattttagatgttttttatttagctaaatattatgatccgtactattttat 42987721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 188
Target Start/End: Complemental strand, 7057819 - 7057739
Alignment:
Q  108 tcttgctggtatacaatttttgaaggatgctttagatgttttttattttgttaaatactacgattcgtactattttatgag 188  Q
    |||||| ||| |||||||||| | ||||  |||| ||||| |||||||   |||||||||| |||| ||||||||||||||    
T  7057819 tcttgccggtgtacaattttttagggatattttaaatgttatttatttgactaaatactacaattcatactattttatgag 7057739  T

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Target: chr2 (Bit Score: 58; Significance: 2e-24; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 103 - 188
Target Start/End: Complemental strand, 12757982 - 12757897
Alignment:
Q  103 atctctcttgctggtatacaatttttgaaggatgctttagatgttttttattttgttaaatactacgattcgtactattttatgag 188  Q
    ||||||||  ||| |||||||||||||||| ||| ||| |||||||||||||||||||||||||||||||| ||||||||||||||    
T  12757982 atctctctcactgatatacaatttttgaagaatgttttggatgttttttattttgttaaatactacgattcttactattttatgag 12757897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 119 - 188
Target Start/End: Original strand, 4592098 - 4592167
Alignment:
Q  119 tacaatttttgaaggatgctttagatgttttttattttgttaaatactacgattcgtactattttatgag 188  Q
    |||||||||| | ||||  ||| ||||||||||||||   |||||| |||||||||||||||||||||||    
T  4592098 tacaattttttagggatattttggatgttttttatttgactaaatagtacgattcgtactattttatgag 4592167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 188
Target Start/End: Original strand, 35005394 - 35005436
Alignment:
Q  146 ttttttattttgttaaatactacgattcgtactattttatgag 188  Q
    |||||||| ||| ||||||||||||| ||||||||||||||||    
T  35005394 ttttttatattgctaaatactacgatccgtactattttatgag 35005436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 188
Target Start/End: Original strand, 667864 - 667944
Alignment:
Q  108 tcttgctggtatacaatttttgaaggatgctttagatgttttttattttgttaaatactacgattcgtactattttatgag 188  Q
    |||||| ||| |||||||||| |  |||  ||| ||||||||| ||||  |||||||||||||||| || |||||||||||    
T  667864 tcttgccggtgtacaatttttaagagatattttggatgtttttaatttgattaaatactacgattcatattattttatgag 667944  T

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Target: scaffold0602 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: scaffold0602
Description:

Target: scaffold0602; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 113 - 188
Target Start/End: Complemental strand, 5218 - 5143
Alignment:
Q  113 ctggtatacaatttttgaaggatgctttagatgttttttattttgttaaatactacgattcgtactattttatgag 188  Q
    ||||||||||||||||||| |||| |||  ||||||||||||||||| ||||||||||||||||||||||||||||    
T  5218 ctggtatacaatttttgaaagatgttttgaatgttttttattttgttcaatactacgattcgtactattttatgag 5143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 56; Significance: 3e-23; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 113 - 188
Target Start/End: Original strand, 8644122 - 8644197
Alignment:
Q  113 ctggtatacaatttttgaaggatgctttagatgttttttattttgttaaatactacgattcgtactattttatgag 188  Q
    ||||||||||||||||||| |||| |||  ||||||||||||||||| ||||||||||||||||||||||||||||    
T  8644122 ctggtatacaatttttgaaagatgttttgaatgttttttattttgttcaatactacgattcgtactattttatgag 8644197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 113 - 188
Target Start/End: Complemental strand, 8614765 - 8614690
Alignment:
Q  113 ctggtatacaatttttgaaggatgctttagatgttttttattttgttaaatactacgattcgtactattttatgag 188  Q
    |||||||||||||||| || |||| |||  ||||||||||||||||| ||||||| ||||||||||||||||||||    
T  8614765 ctggtatacaatttttaaaagatgttttgaatgttttttattttgttcaatactatgattcgtactattttatgag 8614690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 111 - 182
Target Start/End: Complemental strand, 5798464 - 5798393
Alignment:
Q  111 tgctggtatacaatttttgaaggatgctttagatgttttttattttgttaaatactacgattcgtactattt 182  Q
    |||| |||||||| |||| ||||||| ||| |||| ||||||||||||||||||||||||||| ||||||||    
T  5798464 tgctagtatacaacttttaaaggatgttttggatgctttttattttgttaaatactacgattcatactattt 5798393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 146 - 188
Target Start/End: Original strand, 27790975 - 27791017
Alignment:
Q  146 ttttttattttgttaaatactacgattcgtactattttatgag 188  Q
    |||||||||| ||||||||||||||||||||||||||||||||    
T  27790975 ttttttatttagttaaatactacgattcgtactattttatgag 27791017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 122 - 185
Target Start/End: Original strand, 29405771 - 29405835
Alignment:
Q  122 aatttttgaaggatgctttagatgtttttt-attttgttaaatactacgattcgtactattttat 185  Q
    ||||||||| ||||  ||| |||||||||| |||| |||||||||||||||||||||||||||||    
T  29405771 aatttttgagggatattttggatgtttttttatttggttaaatactacgattcgtactattttat 29405835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 113 - 188
Target Start/End: Original strand, 47106516 - 47106591
Alignment:
Q  113 ctggtatacaatttttgaaggatgctttagatgttttttattttgttaaatactacgattcgtactattttatgag 188  Q
    ||||| |||||||||| | ||||  |||||||||||||||||| | |||  |||||||||  ||||||||||||||    
T  47106516 ctggtgtacaattttttagggatattttagatgttttttatttggctaagcactacgatttatactattttatgag 47106591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 188
Target Start/End: Original strand, 2073542 - 2073592
Alignment:
Q  138 tttagatgttttttattttgttaaatactacgattcgtactattttatgag 188  Q
    ||||||||||||| ||||   |||||||||||||||||| |||||||||||    
T  2073542 tttagatgtttttaatttgactaaatactacgattcgtattattttatgag 2073592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 188
Target Start/End: Complemental strand, 7262199 - 7262157
Alignment:
Q  146 ttttttattttgttaaatactacgattcgtactattttatgag 188  Q
    |||||||||| |||||||||||| |||| ||||||||||||||    
T  7262199 ttttttatttggttaaatactaccattcatactattttatgag 7262157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 188
Target Start/End: Original strand, 23349317 - 23349359
Alignment:
Q  146 ttttttattttgttaaatactacgattcgtactattttatgag 188  Q
    |||||||||| | ||||||||||||||| ||||||||||||||    
T  23349317 ttttttatttggctaaatactacgattcatactattttatgag 23349359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 188
Target Start/End: Complemental strand, 22829927 - 22829883
Alignment:
Q  144 tgttttttattttgttaaatactacgattcgtactattttatgag 188  Q
    |||||||||||| | ||||||||||||||| || |||||||||||    
T  22829927 tgttttttatttggctaaatactacgattcatattattttatgag 22829883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 56; Significance: 3e-23; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 93 - 188
Target Start/End: Original strand, 39143996 - 39144091
Alignment:
Q  93 acaataacaaatctctcttgctggtatacaatttttgaaggatgctttagatgttttttattttgttaaatactacgattcgtactattttatgag 188  Q
    |||||||| |||| ||| || || |||||||||||| ||||||| ||| |||||| ||||||||||||||||||| ||||||||||||||||||||    
T  39143996 acaataactaatccctcctgttgatatacaattttttaaggatgttttggatgttgtttattttgttaaatactatgattcgtactattttatgag 39144091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 111 - 188
Target Start/End: Complemental strand, 14418440 - 14418363
Alignment:
Q  111 tgctggtatacaatttttgaaggatgctttagatgttttttattttgttaaatactacgattcgtactattttatgag 188  Q
    ||||||||||||||| |||||||||  ||||||| ||||||||||| |||||||||||||||| ||||||||||||||    
T  14418440 tgctggtatacaattgttgaaggatattttagatattttttattttattaaatactacgattcatactattttatgag 14418363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 107 - 173
Target Start/End: Complemental strand, 35203459 - 35203393
Alignment:
Q  107 ctcttgctggtatacaatttttgaaggatgctttagatgttttttattttgttaaatactacgattc 173  Q
    |||||||| ||||||||||||||||||||| |||  |||||||||||||||||||||||| ||||||    
T  35203459 ctcttgctagtatacaatttttgaaggatgttttgcatgttttttattttgttaaatactgcgattc 35203393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 122 - 185
Target Start/End: Original strand, 41410168 - 41410231
Alignment:
Q  122 aatttttgaaggatgctttagatgttttttattttgttaaatactacgattcgtactattttat 185  Q
    ||||||||| ||||  ||| |||||||||||||| | ||||||||||||||| |||||||||||    
T  41410168 aatttttgagggatattttggatgttttttatttggctaaatactacgattcatactattttat 41410231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 146 - 185
Target Start/End: Original strand, 30247989 - 30248028
Alignment:
Q  146 ttttttattttgttaaatactacgattcgtactattttat 185  Q
    |||||||||| | |||||||||||||||||||||||||||    
T  30247989 ttttttatttggctaaatactacgattcgtactattttat 30248028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 188
Target Start/End: Original strand, 50622187 - 50622229
Alignment:
Q  146 ttttttattttgttaaatactacgattcgtactattttatgag 188  Q
    |||||||||| |||||||||||| |||||||||||||| ||||    
T  50622187 ttttttatttggttaaatactacaattcgtactattttctgag 50622229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 146 - 187
Target Start/End: Original strand, 6083477 - 6083518
Alignment:
Q  146 ttttttattttgttaaatactacgattcgtactattttatga 187  Q
    |||||||||| | |||||||| ||||||||||||||||||||    
T  6083477 ttttttatttggctaaatacttcgattcgtactattttatga 6083518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 119 - 188
Target Start/End: Original strand, 22845038 - 22845107
Alignment:
Q  119 tacaatttttgaaggatgctttagatgttttttattttgttaaatactacgattcgtactattttatgag 188  Q
    |||||||||| | ||||  ||| ||||||||||||||   |||||||||| ||||||| |||||||||||    
T  22845038 tacaattttttagggatattttggatgttttttatttgactaaatactacaattcgtattattttatgag 22845107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 122 - 190
Target Start/End: Original strand, 42096652 - 42096721
Alignment:
Q  122 aatttttgaaggatgctttagatgtttttt-attttgttaaatactacgattcgtactattttatgagat 190  Q
    ||||||||| ||||  ||| |||||||||| |||| | |||||| |||||||||||||||||||| ||||    
T  42096652 aatttttgagggatattttggatgtttttttatttggctaaatattacgattcgtactattttattagat 42096721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 188
Target Start/End: Original strand, 2150628 - 2150656
Alignment:
Q  160 aaatactacgattcgtactattttatgag 188  Q
    |||||||||||||||||||||||||||||    
T  2150628 aaatactacgattcgtactattttatgag 2150656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 188
Target Start/End: Complemental strand, 19454962 - 19454918
Alignment:
Q  144 tgttttttattttgttaaatactacgattcgtactattttatgag 188  Q
    |||||||||||| | ||||||||||||||| || |||||||||||    
T  19454962 tgttttttatttggctaaatactacgattcatattattttatgag 19454918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 188
Target Start/End: Complemental strand, 35688478 - 35688434
Alignment:
Q  144 tgttttttattttgttaaatactacgattcgtactattttatgag 188  Q
    |||||||||||| | ||||||||||||||| || |||||||||||    
T  35688478 tgttttttatttggctaaatactacgattcatattattttatgag 35688434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 111 - 188
Target Start/End: Complemental strand, 30988 - 30911
Alignment:
Q  111 tgctggtatacaatttttgaaggatgctttagatgttttttattttgttaaatactacgattcgtactattttatgag 188  Q
    |||||| ||||||| | ||||||||| ||| |||||||||||||||| |||||||||||||||||||| |||||||||    
T  30988 tgctggaatacaatatctgaaggatgttttggatgttttttattttggtaaatactacgattcgtactcttttatgag 30911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 111 - 187
Target Start/End: Original strand, 25828314 - 25828390
Alignment:
Q  111 tgctggtatacaatttttgaaggatgctttagatgttttttattttgttaaatactacgattcgtactattttatga 187  Q
    |||||||||| ||||| | ||||||| ||| ||||||||||||||||||||||||||| |||| |||||||||||||    
T  25828314 tgctggtatataatttgttaaggatgttttggatgttttttattttgttaaatactacaattcatactattttatga 25828390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 93 - 188
Target Start/End: Original strand, 23141501 - 23141596
Alignment:
Q  93 acaataacaaatctctcttgctggtatacaatttttgaaggatgctttagatgttttttattttgttaaatactacga-ttcgtactattttatgag 188  Q
    |||||||| |||| ||  || ||||||||||||||||||||||| ||| |||| |||||||||||||||||||||||| || ||||| |||||||||    
T  23141501 acaataactaatcccttatgttggtatacaatttttgaaggatgttttggatg-tttttattttgttaaatactacgattttgtacttttttatgag 23141596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 122 - 185
Target Start/End: Original strand, 25694581 - 25694644
Alignment:
Q  122 aatttttgaaggatgctttagatgttttttattttgttaaatactacgattcgtactattttat 185  Q
    |||||||||  |||| ||| |||||||||||||| | |||||||||||||||||||||||||||    
T  25694581 aatttttgagtgatgttttggatgttttttatttggctaaatactacgattcgtactattttat 25694644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 185
Target Start/End: Complemental strand, 38309980 - 38309915
Alignment:
Q  122 aatttttgaaggatgctttagatgtttttt--attttgttaaatactacgattcgtactattttat 185  Q
    ||||||||||||||  ||| ||||||||||  |||| | |||||| ||||||||||||||||||||    
T  38309980 aatttttgaaggatattttggatgttttttttatttggctaaatattacgattcgtactattttat 38309915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 147 - 188
Target Start/End: Complemental strand, 6311159 - 6311118
Alignment:
Q  147 tttttattttgttaaatactacgattcgtactattttatgag 188  Q
    ||||||||| | |||||||||| |||||||||||||||||||    
T  6311159 tttttatttggctaaatactacaattcgtactattttatgag 6311118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 190
Target Start/End: Original strand, 6277742 - 6277786
Alignment:
Q  146 ttttttattttgttaaatactacgattcgtactattttatgagat 190  Q
    |||||||||| | |||||| |||||||||||||||||||| ||||    
T  6277742 ttttttatttggctaaatattacgattcgtactattttattagat 6277786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 102 - 185
Target Start/End: Original strand, 4912596 - 4912679
Alignment:
Q  102 aatctctcttgctggtatacaatttttgaaggatgctttagatgttttttattttgttaaatactacgattcgtactattttat 185  Q
    |||| ||| |||||||||| | ||||||||||||| ||||||||||| |||||||||||||||| ||||||| || ||||||||    
T  4912596 aatccctcctgctggtataaactttttgaaggatgttttagatgtttattattttgttaaatacaacgattcatattattttat 4912679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 116 - 188
Target Start/End: Original strand, 25309415 - 25309487
Alignment:
Q  116 gtatacaatttttgaaggatgctttagatgttttttattttgttaaatactacgattcgtactattttatgag 188  Q
    |||| |||||||||||||||  ||| |||||||||||||||||||||| ||||||||| |||| |||||||||    
T  25309415 gtatgcaatttttgaaggatattttggatgttttttattttgttaaatgctacgattcatacttttttatgag 25309487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 116 - 183
Target Start/End: Complemental strand, 43223665 - 43223598
Alignment:
Q  116 gtatacaatttttgaaggatgctttagatgttttttattttgttaaatactacgattcgtactatttt 183  Q
    ||||| ||||||||||||||| |||  ||||||||||||||||||||||||| ||||| |||||||||    
T  43223665 gtatataatttttgaaggatgttttgcatgttttttattttgttaaatactatgattcatactatttt 43223598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 122 - 185
Target Start/End: Complemental strand, 44300922 - 44300858
Alignment:
Q  122 aatttttgaaggatgctttagatgtttttt-attttgttaaatactacgattcgtactattttat 185  Q
    ||||||||||||||  ||| |||||||||| |||| | |||||||||||||||||||||||||||    
T  44300922 aatttttgaaggatattttggatgtttttttatttggctaaatactacgattcgtactattttat 44300858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 188
Target Start/End: Original strand, 40855944 - 40855986
Alignment:
Q  146 ttttttattttgttaaatactacgattcgtactattttatgag 188  Q
    |||||||||| |||||||||||| |||| ||||||||||||||    
T  40855944 ttttttatttggttaaatactaccattcatactattttatgag 40855986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 188
Target Start/End: Complemental strand, 45112379 - 45112337
Alignment:
Q  146 ttttttattttgttaaatactacgattcgtactattttatgag 188  Q
    |||||||||| |||||||||||| |||| ||||||||||||||    
T  45112379 ttttttatttggttaaatactaccattcatactattttatgag 45112337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 148 - 185
Target Start/End: Original strand, 24430237 - 24430274
Alignment:
Q  148 ttttattttgttaaatactacgattcgtactattttat 185  Q
    |||||||||||||||||||||||| | |||||||||||    
T  24430237 ttttattttgttaaatactacgatacatactattttat 24430274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 107 - 188
Target Start/End: Original strand, 38398325 - 38398406
Alignment:
Q  107 ctcttgctggtatacaatttttgaaggatgctttagatgttttttattttgttaaatactacgattcgtactattttatgag 188  Q
    ||||||||||| |||||||||||||| ||  ||| |||||||||||||| |  ||||| || | ||| || |||||||||||    
T  38398325 ctcttgctggtgtacaatttttgaagtatattttggatgttttttatttggccaaatattatggttcctaatattttatgag 38398406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 107 - 188
Target Start/End: Original strand, 38400867 - 38400948
Alignment:
Q  107 ctcttgctggtatacaatttttgaaggatgctttagatgttttttattttgttaaatactacgattcgtactattttatgag 188  Q
    ||||||||||| |||||||||||||| ||  ||| |||||||||||||| |  ||||| || | ||| || |||||||||||    
T  38400867 ctcttgctggtgtacaatttttgaagtatattttggatgttttttatttggccaaatattatggttcctaatattttatgag 38400948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0472 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0472
Description:

Target: scaffold0472; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 137 - 182
Target Start/End: Complemental strand, 8059 - 8014
Alignment:
Q  137 ctttagatgttttttattttgttaaatactacgattcgtactattt 182  Q
    |||||||||||||||||||   |||||||||| |||||||||||||    
T  8059 ctttagatgttttttatttgactaaatactacaattcgtactattt 8014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0249 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0249
Description:

Target: scaffold0249; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 185
Target Start/End: Complemental strand, 20220 - 20172
Alignment:
Q  138 tttagatgtttttt-attttgttaaatactacgattcgtactattttat 185  Q
    |||||||||||||| |||| |||||||||||| |||| |||||||||||    
T  20220 tttagatgtttttttatttggttaaatactacaattcatactattttat 20172  T

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Target: scaffold0160 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0160
Description:

Target: scaffold0160; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 188
Target Start/End: Original strand, 26053 - 26097
Alignment:
Q  144 tgttttttattttgttaaatactacgattcgtactattttatgag 188  Q
    |||||||||||| | ||||||||||||||| || |||||||||||    
T  26053 tgttttttatttggctaaatactacgattcatattattttatgag 26097  T

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