View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5071_high_26 (Length: 249)
Name: NF5071_high_26
Description: NF5071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5071_high_26 |
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Alignment Details
Target: chr4 (Bit Score: 171; Significance: 6e-92; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 26840896 - 26841136
Alignment:
| Q |
1 |
cataaagagaagaaataaaagaacccaaatctatgttcttttcgacttaaaacaagacaactattgaacgataaccatataaccaatactaactaaaaaa |
100 |
Q |
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| T |
26840896 |
cataaagagaagaaataaa-gaacccaaagctatgttcttttcgacttaaaacaaggcaactacttaacgataaccatataaccaatactaactaaaaaa |
26840994 |
T |
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| Q |
101 |
cttgttgaactaacacaacat---gaaggcgttgtgctctacatctgtaacatctcctgaagactcaatattatat--------cataaacgcggcctag |
189 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| |
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| T |
26840995 |
cttgttgaactaacacaacatgaagaaggcgttgtgctctacatctgtaacatctcctgaagactcaatattatatatattttgcataaatgcggcctag |
26841094 |
T |
|
| Q |
190 |
ttggaaatggactttgaaaaatggaatcccgtgggagggatg |
231 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
26841095 |
ttggaaatggactttgaaaaatggaatcccgtgggagggatg |
26841136 |
T |
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