View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5071_high_29 (Length: 246)
Name: NF5071_high_29
Description: NF5071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5071_high_29 |
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| [»] chr8 (1 HSPs) |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 6 - 246
Target Start/End: Original strand, 142800 - 143040
Alignment:
| Q |
6 |
cacagaggggtgttattagttgaaaataatggttgcaatagcaataaggaaaattgtgttagttttattgatcttgcttttaaatactttgaagattatt |
105 |
Q |
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| T |
142800 |
cacagaggggtgttattagttgaaaataatggttgcaatagcaataaggaaaattgtgttagttttattgatcttgcttttaaatactttgaagattatt |
142899 |
T |
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| Q |
106 |
atcctcaaaagttaataagtcaaaaattggagttgactcaaaattgcaaatcttgcaaccatttcactgatttgattagatatacttatcttccaagaga |
205 |
Q |
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| T |
142900 |
atcctcaaaagttaataagtcaaaaattggagttgactcaaaattgcaaatcttgcaaccatttcactgatttgattagatatacttatcttccaagaga |
142999 |
T |
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| Q |
206 |
aattcaagtaaagggtgtgaatccatcaaaaagtttcgcac |
246 |
Q |
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| T |
143000 |
aattcaagtaaagggtgtgaatccatcaaaaagtttcgcac |
143040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 164; Significance: 9e-88; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 13 - 242
Target Start/End: Complemental strand, 45960869 - 45960643
Alignment:
| Q |
13 |
gggtgttattagttgaaaataatggttgcaatagcaataaggaaaattgtgttagttttattgatcttgcttttaaatactttgaagattattatcctca |
112 |
Q |
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| T |
45960869 |
gggtgttattaggtgaaaagaatggttgcaatagcaataaggaaaattgccttagttttattgatcttgcttttaactactttgaagattattatcctca |
45960770 |
T |
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| Q |
113 |
aaagttaataagtcaaaaattggagttgactcaaaattgcaaatcttgcaaccatttcactgatttgattagatatacttatcttccaagagaaattcaa |
212 |
Q |
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| T |
45960769 |
aaagttaa---gtaaaaaattggagttgactcaaaattgcaaatcttgcaaacacttcgctgatttgattagatatacttatcttccaagagaaattcaa |
45960673 |
T |
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| Q |
213 |
gtaaagggtgtgaatccatcaaaaagtttc |
242 |
Q |
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| T |
45960672 |
gttaatggtatgaatccatcacaaagtttc |
45960643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 146; Significance: 5e-77; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 16 - 239
Target Start/End: Original strand, 298196 - 298416
Alignment:
| Q |
16 |
tgttattagttgaaaataatggttgcaatagcaataaggaaaattgtgttagttttattgatcttgcttttaaatactttgaagattattatcctcaaaa |
115 |
Q |
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| T |
298196 |
tgttattaggtgaaaagaatggtttcaatagcaataaggaaaattgtgttagttttattgatcttgcttttaactactttgaagtttattatcctcaaaa |
298295 |
T |
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| Q |
116 |
gttaataagtcaaaaattggagttgactcaaaattgcaaatcttgcaaccatttcactgatttgattagatatacttatcttccaagagaaattcaagta |
215 |
Q |
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| T |
298296 |
gt---taagtaaaaacttggagttgactccaaattgcaaatcttgcaaacacttcattgatttgattagatatacttatcttccaagagaaattcaagtt |
298392 |
T |
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| Q |
216 |
aagggtgtgaatccatcaaaaagt |
239 |
Q |
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| T |
298393 |
aatggtatgagtccatcacaaagt |
298416 |
T |
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