View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5071_high_38 (Length: 236)
Name: NF5071_high_38
Description: NF5071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5071_high_38 |
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Alignment Details
Target: chr8 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 143289 - 143510
Alignment:
| Q |
1 |
cactattcagagcaacctttcatatgcaactatgtttctttaattgattctttgattcatacacacgaagatgttgagttgttggttgacacagaaatca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
143289 |
cactattcagagcaacctttcatatgcaactatgtttctttaattgattctttgattcatacacacgaagatgttgagttgttggttgacacagaaatca |
143388 |
T |
|
| Q |
101 |
ttagccatgaacttggaagtcatgcagaattggcaacattggttaatggtctttgcaaatatgttgtggtgacatcaaattgttatggaaagatcattaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
143389 |
ttagccatgaacttggaagtcatgcagaattggcaacattggttaatggtctatgcaaatatgttgtggtgacatcaaattgttatggaaagatcattaa |
143488 |
T |
|
| Q |
201 |
ggaaatgaatgaacattataat |
222 |
Q |
| |
|
||||||||||||||||||||| |
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| T |
143489 |
agaaatgaatgaacattataat |
143510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 4 - 191
Target Start/End: Complemental strand, 106549 - 106362
Alignment:
| Q |
4 |
tattcagagcaacctttcatatgcaactatgtttctttaattgattctttgattcatacacacgaagatgttgagttgttggttgacacagaaatcatta |
103 |
Q |
| |
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|||||| | ||||||||||||||||| ||||||||| ||||||| | | | || | || || |||||||| |||||||||||||| | ||||||||| |
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| T |
106549 |
tattcaaaccaacctttcatatgcaattatgtttctctaattgactttcttatcaacactcaagaagatgtggagttgttggttgataaggaaatcattg |
106450 |
T |
|
| Q |
104 |
gccatgaacttggaagtcatgcagaattggcaacattggttaatggtctttgcaaatatgttgtggtgacatcaaattgttatggaaa |
191 |
Q |
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|||||||||||||||||||||||||||||||| || | ||||||||||| || |||||||||| |||| |||| ||||||||| |
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| T |
106449 |
ttcatgaacttggaagtcatgcagaattggcaactatgataaatggtctttgtaagaatgttgtggtaacatgtaattattatggaaa |
106362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 45958373 - 45958151
Alignment:
| Q |
1 |
cactattcagagcaacctttcatatgcaactatgtttctttaattgattctttgattcatacacacgaagatgttgagttgttggttgacacagaaatca |
100 |
Q |
| |
|
||||||||| | |||||||||||||| |||||||||||||||||||||||||| ||||||||||| ||| |||||||||||||||||||||||||||||| |
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| T |
45958373 |
cactattcaaaccaacctttcatatggaactatgtttctttaattgattctttcattcatacacatgaaaatgttgagttgttggttgacacagaaatca |
45958274 |
T |
|
| Q |
101 |
ttagccatgaacttggaagtcatgcagaattggcaacattggttaatggtctttgcaaatatgttgtggtgacatcaaattgtt-atggaaagatcatta |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
45958273 |
ttagccatgaacttggaagtcatgcagaattggcaacattggttaatggtctttgcaaatatgttgtggtgacatcaaattgttaatggaaagatcatta |
45958174 |
T |
|
| Q |
200 |
aggaaatgaatgaacattataat |
222 |
Q |
| |
|
||||||||||||||||||||||| |
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|
| T |
45958173 |
aggaaatgaatgaacattataat |
45958151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 15 - 97
Target Start/End: Original strand, 25539603 - 25539683
Alignment:
| Q |
15 |
acctttcatatgcaactatgtttctttaattgattctttgattcatacacacgaagatgttgagttgttggttgacacagaaa |
97 |
Q |
| |
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|||| |||||| ||||||||||||| ||||||| ||||| ||||||| | ||||||| || ||||||||||||||||||| |
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|
| T |
25539603 |
acctgtcatatacaactatgtttctctaattga--ctttgtttcatactcttgaagatggagaattgttggttgacacagaaa |
25539683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 87
Target Start/End: Complemental strand, 27123282 - 27123208
Alignment:
| Q |
13 |
caacctttcatatgcaactatgtttctttaattgattctttgattcatacacacgaagatgttgagttgttggtt |
87 |
Q |
| |
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|||| ||||||||||||||| |||||| ||||||| |||| |||||||| | ||||||| |||||||||||| |
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| T |
27123282 |
caacttttcatatgcaactaggtttctctaattgactcttcgattcatatttataaagatgtggagttgttggtt |
27123208 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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