View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5071_low_10 (Length: 374)

Name: NF5071_low_10
Description: NF5071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5071_low_10
NF5071_low_10
[»] chr2 (35 HSPs)
chr2 (18-185)||(36700636-36700797)
chr2 (242-352)||(35317113-35317223)
chr2 (242-352)||(12407431-12407541)
chr2 (242-352)||(24776406-24776516)
chr2 (242-352)||(14198626-14198736)
chr2 (242-352)||(16269742-16269852)
chr2 (242-352)||(20605287-20605397)
chr2 (242-352)||(31170673-31170783)
chr2 (242-352)||(43847697-43847807)
chr2 (264-352)||(1789515-1789603)
chr2 (242-352)||(44765826-44765936)
chr2 (264-352)||(5093096-5093184)
chr2 (268-352)||(32125330-32125414)
chr2 (242-352)||(305514-305624)
chr2 (264-352)||(28844628-28844716)
chr2 (265-352)||(9120200-9120287)
chr2 (264-352)||(22551812-22551900)
chr2 (264-352)||(26788859-26788947)
chr2 (129-185)||(29743435-29743491)
chr2 (264-352)||(33135696-33135784)
chr2 (264-352)||(10657479-10657567)
chr2 (269-352)||(18177345-18177428)
chr2 (269-352)||(25288237-25288320)
chr2 (264-335)||(28740349-28740420)
chr2 (264-333)||(7026677-7026746)
chr2 (270-333)||(379016-379079)
chr2 (270-333)||(13833490-13833553)
chr2 (264-322)||(6224626-6224684)
chr2 (269-331)||(26601270-26601332)
chr2 (264-333)||(3463745-3463814)
chr2 (53-109)||(29743313-29743370)
chr2 (281-352)||(43078653-43078724)
chr2 (264-322)||(3574920-3574978)
chr2 (264-313)||(21370638-21370687)
chr2 (273-313)||(10125378-10125418)
[»] chr6 (16 HSPs)
chr6 (242-352)||(1391673-1391783)
chr6 (242-352)||(6197524-6197634)
chr6 (242-352)||(28002714-28002824)
chr6 (264-352)||(2300784-2300872)
chr6 (264-352)||(29076670-29076758)
chr6 (264-352)||(29111644-29111732)
chr6 (264-352)||(31895767-31895855)
chr6 (264-352)||(14262479-14262567)
chr6 (264-352)||(34759096-34759184)
chr6 (269-341)||(34773485-34773557)
chr6 (273-352)||(7051925-7052004)
chr6 (264-336)||(7497147-7497219)
chr6 (264-333)||(30385122-30385191)
chr6 (269-333)||(31067569-31067633)
chr6 (284-333)||(4200492-4200541)
chr6 (269-313)||(3848286-3848330)
[»] chr3 (56 HSPs)
chr3 (264-352)||(40246915-40247003)
chr3 (242-352)||(3206252-3206362)
chr3 (242-352)||(10139193-10139303)
chr3 (242-352)||(20498258-20498368)
chr3 (264-352)||(996133-996221)
chr3 (264-352)||(6589635-6589723)
chr3 (264-352)||(33807845-33807933)
chr3 (265-352)||(3999692-3999779)
chr3 (242-352)||(19253876-19253986)
chr3 (242-352)||(54625641-54625751)
chr3 (264-352)||(29030076-29030164)
chr3 (264-352)||(29448905-29448993)
chr3 (264-352)||(37820524-37820612)
chr3 (265-352)||(25418438-25418525)
chr3 (242-352)||(35337784-35337894)
chr3 (268-352)||(33996588-33996672)
chr3 (265-352)||(22057834-22057921)
chr3 (264-352)||(52114600-52114688)
chr3 (265-352)||(51699527-51699614)
chr3 (242-345)||(1440006-1440109)
chr3 (242-352)||(44762084-44762194)
chr3 (242-352)||(53929175-53929285)
chr3 (264-352)||(18749683-18749771)
chr3 (264-352)||(36674177-36674265)
chr3 (264-352)||(52618012-52618100)
chr3 (269-352)||(34484077-34484160)
chr3 (270-352)||(5825139-5825221)
chr3 (270-352)||(40897221-40897303)
chr3 (264-341)||(51737784-51737861)
chr3 (264-352)||(6035100-6035188)
chr3 (264-352)||(26107332-26107420)
chr3 (264-352)||(32580247-32580335)
chr3 (264-352)||(44906560-44906648)
chr3 (264-352)||(48379228-48379316)
chr3 (264-352)||(50903287-50903375)
chr3 (269-352)||(54628920-54629003)
chr3 (264-334)||(20833063-20833133)
chr3 (265-331)||(52079999-52080065)
chr3 (264-333)||(10728707-10728776)
chr3 (269-333)||(10660611-10660675)
chr3 (264-352)||(11431597-11431685)
chr3 (264-352)||(17946359-17946447)
chr3 (264-327)||(539476-539539)
chr3 (264-331)||(27899415-27899482)
chr3 (269-352)||(31646331-31646414)
chr3 (264-341)||(52810449-52810526)
chr3 (288-352)||(1439941-1440005)
chr3 (264-333)||(39038111-39038180)
chr3 (264-333)||(39842550-39842619)
chr3 (273-352)||(55235264-55235344)
chr3 (264-322)||(23753463-23753521)
chr3 (311-352)||(6131280-6131321)
chr3 (264-333)||(50762116-50762185)
chr3 (264-313)||(6975817-6975866)
chr3 (264-313)||(37454932-37454981)
chr3 (264-320)||(23535890-23535946)
[»] scaffold0400 (1 HSPs)
scaffold0400 (242-352)||(15080-15190)
[»] scaffold0365 (1 HSPs)
scaffold0365 (242-352)||(15723-15833)
[»] scaffold0276 (1 HSPs)
scaffold0276 (267-352)||(586-671)
[»] scaffold0113 (1 HSPs)
scaffold0113 (242-352)||(38942-39052)
[»] chr8 (35 HSPs)
chr8 (242-352)||(24501859-24501969)
chr8 (242-352)||(42937401-42937511)
chr8 (242-352)||(42938163-42938273)
chr8 (242-352)||(7506945-7507055)
chr8 (242-352)||(26374476-26374586)
chr8 (242-352)||(42735323-42735433)
chr8 (264-352)||(10392283-10392371)
chr8 (242-352)||(23115215-23115324)
chr8 (242-348)||(2704869-2704975)
chr8 (268-352)||(5576666-5576750)
chr8 (271-352)||(4950062-4950143)
chr8 (266-335)||(43959731-43959800)
chr8 (264-352)||(14782181-14782269)
chr8 (264-352)||(44725856-44725944)
chr8 (264-341)||(43166747-43166824)
chr8 (264-352)||(9288503-9288591)
chr8 (264-352)||(18958773-18958861)
chr8 (264-352)||(26856139-26856227)
chr8 (269-352)||(4403184-4403267)
chr8 (264-352)||(10295426-10295515)
chr8 (264-333)||(16362268-16362337)
chr8 (264-352)||(19717927-19718015)
chr8 (264-352)||(39467514-39467602)
chr8 (242-322)||(32711358-32711438)
chr8 (242-331)||(41479147-41479236)
chr8 (270-341)||(8410455-8410526)
chr8 (264-333)||(37857191-37857260)
chr8 (264-322)||(4031334-4031392)
chr8 (264-322)||(31623767-31623825)
chr8 (272-346)||(39189867-39189940)
chr8 (264-333)||(7466407-7466476)
chr8 (264-333)||(18306026-18306095)
chr8 (264-333)||(32497597-32497666)
chr8 (269-333)||(42305850-42305914)
chr8 (272-333)||(13478315-13478376)
[»] chr7 (57 HSPs)
chr7 (242-352)||(7718408-7718518)
chr7 (242-352)||(30440847-30440957)
chr7 (242-352)||(43581136-43581246)
chr7 (267-352)||(973260-973345)
chr7 (242-352)||(47879219-47879329)
chr7 (264-352)||(40996695-40996783)
chr7 (268-352)||(43679491-43679575)
chr7 (265-352)||(7719306-7719393)
chr7 (269-352)||(32142963-32143046)
chr7 (266-344)||(34009088-34009166)
chr7 (242-352)||(18914781-18914891)
chr7 (242-352)||(34695324-34695434)
chr7 (267-352)||(44343442-44343527)
chr7 (242-352)||(47914317-47914427)
chr7 (270-352)||(20275309-20275391)
chr7 (242-352)||(12893459-12893569)
chr7 (264-352)||(10068533-10068621)
chr7 (264-352)||(12963767-12963855)
chr7 (242-352)||(39219423-39219532)
chr7 (242-331)||(31638926-31639015)
chr7 (264-352)||(3022992-3023080)
chr7 (264-352)||(23101364-23101452)
chr7 (264-352)||(28342413-28342501)
chr7 (268-345)||(7113529-7113606)
chr7 (264-352)||(9882282-9882370)
chr7 (272-352)||(10676466-10676546)
chr7 (264-352)||(18838455-18838543)
chr7 (264-352)||(29614810-29614898)
chr7 (264-352)||(39784165-39784253)
chr7 (270-352)||(33382709-33382791)
chr7 (270-352)||(43187403-43187485)
chr7 (264-352)||(8675399-8675487)
chr7 (264-352)||(28034851-28034939)
chr7 (269-333)||(44121965-44122029)
chr7 (264-331)||(19251605-19251672)
chr7 (270-352)||(7993214-7993296)
chr7 (264-333)||(509722-509791)
chr7 (264-333)||(40460772-40460841)
chr7 (264-352)||(12740439-12740526)
chr7 (264-352)||(32883848-32883936)
chr7 (269-344)||(25805763-25805838)
chr7 (270-333)||(29585586-29585649)
chr7 (264-335)||(46405494-46405565)
chr7 (265-331)||(727587-727653)
chr7 (264-333)||(37327993-37328062)
chr7 (284-352)||(37972913-37972981)
chr7 (264-326)||(3797129-3797191)
chr7 (264-322)||(47066770-47066828)
chr7 (269-322)||(17001099-17001152)
chr7 (269-333)||(44256831-44256895)
chr7 (264-333)||(33892315-33892384)
chr7 (264-333)||(39028163-39028232)
chr7 (304-348)||(10617024-10617068)
chr7 (284-352)||(41827390-41827458)
chr7 (269-328)||(447854-447913)
chr7 (269-343)||(1470289-1470362)
chr7 (324-352)||(19810915-19810943)
[»] chr5 (23 HSPs)
chr5 (242-352)||(7016785-7016895)
chr5 (242-352)||(21147117-21147227)
chr5 (264-352)||(5272965-5273053)
chr5 (265-352)||(33656087-33656174)
chr5 (242-352)||(849197-849307)
chr5 (264-352)||(27458996-27459084)
chr5 (265-352)||(6460865-6460952)
chr5 (264-352)||(139345-139433)
chr5 (264-352)||(32157943-32158031)
chr5 (264-352)||(4550303-4550391)
chr5 (264-346)||(14465279-14465361)
chr5 (264-352)||(13926003-13926091)
chr5 (264-352)||(14000151-14000239)
chr5 (273-352)||(7947619-7947698)
chr5 (264-352)||(1152149-1152237)
chr5 (264-333)||(4240517-4240586)
chr5 (269-333)||(5949185-5949249)
chr5 (264-352)||(39852417-39852505)
chr5 (273-333)||(1461203-1461263)
chr5 (264-335)||(22746369-22746440)
chr5 (273-333)||(40013767-40013827)
chr5 (264-352)||(9689730-9689817)
chr5 (271-322)||(37013993-37014044)
[»] chr4 (57 HSPs)
chr4 (242-352)||(28541747-28541857)
chr4 (264-352)||(7249812-7249900)
chr4 (264-352)||(42786755-42786843)
chr4 (242-352)||(7007423-7007533)
chr4 (267-352)||(27454125-27454210)
chr4 (242-352)||(32950883-32950993)
chr4 (267-352)||(41881129-41881214)
chr4 (242-352)||(55302892-55303002)
chr4 (264-352)||(12113016-12113104)
chr4 (264-352)||(41320881-41320969)
chr4 (264-350)||(37046500-37046586)
chr4 (242-352)||(1044856-1044966)
chr4 (242-352)||(25331180-25331290)
chr4 (242-352)||(25446099-25446209)
chr4 (269-352)||(39479402-39479485)
chr4 (242-352)||(23465004-23465114)
chr4 (264-352)||(9163147-9163235)
chr4 (264-352)||(19740955-19741043)
chr4 (264-352)||(34228630-34228718)
chr4 (265-352)||(3436665-3436752)
chr4 (242-352)||(1112942-1113052)
chr4 (242-352)||(30009724-30009834)
chr4 (242-342)||(25504696-25504796)
chr4 (270-352)||(44770900-44770982)
chr4 (242-352)||(22202064-22202174)
chr4 (264-352)||(5441475-5441563)
chr4 (264-352)||(27768127-27768215)
chr4 (264-352)||(37828449-37828537)
chr4 (264-352)||(48261198-48261286)
chr4 (264-352)||(51320992-51321080)
chr4 (264-352)||(54341215-54341303)
chr4 (264-347)||(37915898-37915981)
chr4 (264-333)||(23987285-23987354)
chr4 (284-352)||(24131029-24131097)
chr4 (242-331)||(31314800-31314889)
chr4 (264-352)||(32322162-32322250)
chr4 (264-344)||(53275910-53275990)
chr4 (264-352)||(54853515-54853603)
chr4 (264-335)||(29649731-29649802)
chr4 (264-331)||(36479299-36479366)
chr4 (270-352)||(28371001-28371083)
chr4 (269-335)||(40537214-40537280)
chr4 (264-333)||(28483970-28484039)
chr4 (264-352)||(39307300-39307388)
chr4 (264-322)||(32684065-32684123)
chr4 (267-352)||(46635695-46635774)
chr4 (264-322)||(49834890-49834948)
chr4 (270-331)||(12913301-12913362)
chr4 (264-333)||(30967365-30967434)
chr4 (264-333)||(50018322-50018391)
chr4 (264-322)||(5800049-5800107)
chr4 (264-352)||(41725196-41725281)
chr4 (270-331)||(56445413-56445474)
chr4 (305-352)||(8711978-8712025)
chr4 (305-352)||(24736447-24736494)
chr4 (264-322)||(49501588-49501646)
chr4 (264-322)||(49507653-49507711)
[»] chr1 (41 HSPs)
chr1 (264-352)||(6304299-6304387)
chr1 (264-352)||(50192597-50192685)
chr1 (242-352)||(19451855-19451965)
chr1 (242-352)||(45760056-45760166)
chr1 (264-352)||(35279737-35279825)
chr1 (264-352)||(45536009-45536097)
chr1 (264-352)||(47654398-47654486)
chr1 (268-352)||(49198316-49198400)
chr1 (242-352)||(49418127-49418237)
chr1 (242-352)||(21222190-21222300)
chr1 (242-352)||(47780754-47780864)
chr1 (264-352)||(730214-730302)
chr1 (264-352)||(32589000-32589088)
chr1 (269-352)||(31572244-31572327)
chr1 (269-352)||(35679175-35679258)
chr1 (242-352)||(28824420-28824529)
chr1 (264-352)||(48524384-48524472)
chr1 (264-352)||(6312639-6312727)
chr1 (264-352)||(9577479-9577567)
chr1 (264-352)||(29396435-29396523)
chr1 (264-352)||(51085860-51085948)
chr1 (264-352)||(51701645-51701733)
chr1 (265-352)||(29556170-29556257)
chr1 (264-352)||(46328107-46328195)
chr1 (264-352)||(48177509-48177597)
chr1 (264-346)||(25612222-25612304)
chr1 (269-346)||(28387446-28387523)
chr1 (272-331)||(955823-955882)
chr1 (269-352)||(9322547-9322630)
chr1 (264-333)||(29219351-29219420)
chr1 (269-352)||(15835100-15835183)
chr1 (264-331)||(33025578-33025645)
chr1 (264-333)||(38536155-38536224)
chr1 (264-333)||(38558373-38558442)
chr1 (264-313)||(49230951-49231000)
chr1 (264-352)||(37014687-37014775)
chr1 (264-322)||(18798556-18798614)
chr1 (264-333)||(5495162-5495231)
chr1 (272-322)||(31622536-31622586)
chr1 (286-332)||(43885157-43885203)
chr1 (269-322)||(48668852-48668905)
[»] scaffold0004 (1 HSPs)
scaffold0004 (242-352)||(102145-102255)
[»] scaffold0151 (1 HSPs)
scaffold0151 (242-352)||(38652-38761)
[»] scaffold0037 (1 HSPs)
scaffold0037 (242-352)||(100261-100371)
[»] scaffold1504 (1 HSPs)
scaffold1504 (264-352)||(936-1023)
[»] scaffold0110 (1 HSPs)
scaffold0110 (269-352)||(39664-39747)
[»] scaffold0042 (1 HSPs)
scaffold0042 (269-346)||(58129-58206)
[»] scaffold0009 (2 HSPs)
scaffold0009 (92-185)||(146825-146910)
scaffold0009 (53-90)||(146742-146779)
[»] scaffold0922 (1 HSPs)
scaffold0922 (264-329)||(4272-4337)
[»] scaffold0054 (1 HSPs)
scaffold0054 (271-352)||(36954-37035)
[»] scaffold0543 (1 HSPs)
scaffold0543 (269-352)||(10637-10720)
[»] scaffold0306 (1 HSPs)
scaffold0306 (264-333)||(13954-14023)
[»] scaffold0152 (1 HSPs)
scaffold0152 (264-333)||(21304-21373)
[»] scaffold0007 (1 HSPs)
scaffold0007 (272-350)||(199905-199983)
[»] scaffold0839 (1 HSPs)
scaffold0839 (299-352)||(3739-3792)


Alignment Details
Target: chr2 (Bit Score: 141; Significance: 8e-74; HSPs: 35)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 18 - 185
Target Start/End: Original strand, 36700636 - 36700797
Alignment:
Q  18 tatagatggttttctataacaaaatatatatcaatgtgactcagctttttggattttttcctttcaagaacttcccttaattagttatgcatttgacgct 117  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36700636 tatagatggttttctataacaaaatatatatcaatgtgactcggctttttggattttttcctttcaagaacttcccttaattagttatgcatttgacgct 36700735  T
Q  118 attacaagaataagaataagtaaataagagattccttctttccaatgtggtattatattacaactttt 185  Q
    |||||      |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36700736 attac------aagaataagtaaataagagattccttctttccaatgtggtattatattacaactttt 36700797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 242 - 352
Target Start/End: Original strand, 35317113 - 35317223
Alignment:
Q  242 gactcttaatcacttnnnnnnngtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaatttt 341  Q
    |||||||||||||||       |||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||    
T  35317113 gactcttaatcacttaaaaaaagtctagtggtattcaaaatcattcaaatttcgaaggattgtttaataaatcagattttgatggattttgtggaatttt 35317212  T
Q  342 ctagtgaaatt 352  Q
    |||||||||||    
T  35317213 ctagtgaaatt 35317223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 242 - 352
Target Start/End: Original strand, 12407431 - 12407541
Alignment:
Q  242 gactcttaatcacttnnnnnnngtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaatttt 341  Q
    |||||||||||||||       |||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| |||||    
T  12407431 gactcttaatcacttaaaaaaagtctagtggtattcaaaatcattcaaattttgaaggattgtttaataaatcagattttgatggattttgtgggatttt 12407530  T
Q  342 ctagtgaaatt 352  Q
    |||||||||||    
T  12407531 ctagtgaaatt 12407541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 242 - 352
Target Start/End: Original strand, 24776406 - 24776516
Alignment:
Q  242 gactcttaatcacttnnnnnnngtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaatttt 341  Q
    |||||||||||||||       |||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| |||||    
T  24776406 gactcttaatcacttaaaaaaagtctagtggtattcaaaatcattcaaatttcgaaggattgtttaataaatcagattttgatggattttgtgggatttt 24776505  T
Q  342 ctagtgaaatt 352  Q
    |||||||||||    
T  24776506 ctagtgaaatt 24776516  T

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Target: chr2; HSP #5
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 242 - 352
Target Start/End: Complemental strand, 14198736 - 14198626
Alignment:
Q  242 gactcttaatcacttnnnnnnngtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaatttt 341  Q
    |||||||||||||||       ||| |||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| |||||    
T  14198736 gactcttaatcacttaaaaaaagtccagtggtattcaaaatcattcaaatttcgaaggattgtttaataaatcagattttgatggattttgtgggatttt 14198637  T
Q  342 ctagtgaaatt 352  Q
    |||||||||||    
T  14198636 ctagtgaaatt 14198626  T

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Target: chr2; HSP #6
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 242 - 352
Target Start/End: Original strand, 16269742 - 16269852
Alignment:
Q  242 gactcttaatcacttnnnnnnngtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaatttt 341  Q
    |||||||||||||||       |||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| |||||    
T  16269742 gactcttaatcacttaaaaaaagtctagtggtattcaaaatcattcaaatttcgaaggattgtttaataaatcagattttgatggattttgtgggatttt 16269841  T
Q  342 ctagtgaaatt 352  Q
     ||||||||||    
T  16269842 atagtgaaatt 16269852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 242 - 352
Target Start/End: Original strand, 20605287 - 20605397
Alignment:
Q  242 gactcttaatcacttnnnnnnngtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaatttt 341  Q
    |||||||||||||||       ||||||||||||||||||||||| |||||| |||||||| |||||||||||||||||||||||||||||||| |||||    
T  20605287 gactcttaatcacttaaaaaaagtctagtggtattcaaaatcattaaaatttcgaaggattgtttaataaatcagattttgatggattttgtgggatttt 20605386  T
Q  342 ctagtgaaatt 352  Q
    |||||||||||    
T  20605387 ctagtgaaatt 20605397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 242 - 352
Target Start/End: Complemental strand, 31170783 - 31170673
Alignment:
Q  242 gactcttaatcacttnnnnnnngtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaatttt 341  Q
    |||||||||||||||       ||||||||||||||||||||||||||||||  ||||||| |||||||||||||||||||||||||||||||| |||||    
T  31170783 gactcttaatcacttaaaaaaagtctagtggtattcaaaatcattcaaatttccaaggattgtttaataaatcagattttgatggattttgtgggatttt 31170684  T
Q  342 ctagtgaaatt 352  Q
    |||||||||||    
T  31170683 ctagtgaaatt 31170673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 242 - 352
Target Start/End: Original strand, 43847697 - 43847807
Alignment:
Q  242 gactcttaatcacttnnnnnnngtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaatttt 341  Q
    |||||||||||||||       ||||||| |||||||||||||||||||||| |||||||| |||||||||||||| |||||||||||||||||||||||    
T  43847697 gactcttaatcacttaaaaaaagtctagttgtattcaaaatcattcaaatttcgaaggattgtttaataaatcagaatttgatggattttgtggaatttt 43847796  T
Q  342 ctagtgaaatt 352  Q
    |||||||||||    
T  43847797 ctagtgaaatt 43847807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 264 - 352
Target Start/End: Original strand, 1789515 - 1789603
Alignment:
Q  264 gtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaattttctagtgaaatt 352  Q
    |||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| |||||||| |||||||    
T  1789515 gtctagtggtattcaaaatcattcaaatttcgaaggattgtttaataaatcagattttgatggattttgtgggattttctaatgaaatt 1789603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 242 - 352
Target Start/End: Original strand, 44765826 - 44765936
Alignment:
Q  242 gactcttaatcacttnnnnnnngtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaatttt 341  Q
    |||||||||||||||       |||||||||||||||||||||||||||||| ||| |||| |||||||||| ||||||||||||||||||||| |||||    
T  44765826 gactcttaatcacttaaaaaaagtctagtggtattcaaaatcattcaaatttcgaaagattgtttaataaataagattttgatggattttgtgggatttt 44765925  T
Q  342 ctagtgaaatt 352  Q
    |||||||||||    
T  44765926 ctagtgaaatt 44765936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 264 - 352
Target Start/End: Complemental strand, 5093184 - 5093096
Alignment:
Q  264 gtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaattttctagtgaaatt 352  Q
    ||||||| |||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| |||||||| |||||||    
T  5093184 gtctagtagtattcaaaatcattcaaattttgaaggattgtttaataaatcagattttgatggattttgtgggattttctaatgaaatt 5093096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 268 - 352
Target Start/End: Original strand, 32125330 - 32125414
Alignment:
Q  268 agtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaattttctagtgaaatt 352  Q
    |||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| |||||||||| |||||    
T  32125330 agtggtattcaaaatcattcaaatttcgaaggattgtttaataaatcagattttgatggattttgtgggattttctagtaaaatt 32125414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 242 - 352
Target Start/End: Complemental strand, 305624 - 305514
Alignment:
Q  242 gactcttaatcacttnnnnnnngtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaatttt 341  Q
    |||||||||||||||       |||||||||||||||||||||||||||||| ||| |||| ||||||||||||||||| |||||||||||||  |||||    
T  305624 gactcttaatcacttaaaaaaagtctagtggtattcaaaatcattcaaattttgaatgattgtttaataaatcagatttcgatggattttgtgagatttt 305525  T
Q  342 ctagtgaaatt 352  Q
    |||||||||||    
T  305524 ctagtgaaatt 305514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 264 - 352
Target Start/End: Original strand, 28844628 - 28844716
Alignment:
Q  264 gtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaattttctagtgaaatt 352  Q
    |||| ||||||||||||||||||||||||| |||||||| |||||||||| ||||||||||||||||||||||||||| ||||| ||||    
T  28844628 gtcttgtggtattcaaaatcattcaaatttcgaaggattgtttaataaattagattttgatggattttgtggaattttgtagtgtaatt 28844716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 265 - 352
Target Start/End: Original strand, 9120200 - 9120287
Alignment:
Q  265 tctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaattttctagtgaaatt 352  Q
    ||||||| |||||||||||||||| ||||  ||||||| |||||||||| ||||||||||||||||||||| ||||||||||||||||    
T  9120200 tctagtgatattcaaaatcattcagattttaaaggattgtttaataaattagattttgatggattttgtgggattttctagtgaaatt 9120287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 264 - 352
Target Start/End: Complemental strand, 22551900 - 22551812
Alignment:
Q  264 gtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaattttctagtgaaatt 352  Q
    ||||||||||||||||||| |||||||||| ||| |||| |||| ||||| | ||||||||||||||||||| ||||||||||||||||    
T  22551900 gtctagtggtattcaaaattattcaaatttcgaatgattgtttattaaattaaattttgatggattttgtgggattttctagtgaaatt 22551812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 264 - 352
Target Start/End: Original strand, 26788859 - 26788947
Alignment:
Q  264 gtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaattttctagtgaaatt 352  Q
    |||| ||||||||||||||||||||||||| |||||||| ||||||||||  |||||||||||||||||||| ||||| ||||| ||||    
T  26788859 gtcttgtggtattcaaaatcattcaaattttgaaggattgtttaataaattggattttgatggattttgtgggattttgtagtgtaatt 26788947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 129 - 185
Target Start/End: Original strand, 29743435 - 29743491
Alignment:
Q  129 aagaataagtaaataagagattccttctttccaatgtggtattatattacaactttt 185  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29743435 aagaataagtaaataagagattccttctttccaatgtggtattatattacaactttt 29743491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 264 - 352
Target Start/End: Original strand, 33135696 - 33135784
Alignment:
Q  264 gtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaattttctagtgaaatt 352  Q
    |||| ||||||||||||||||||||||||| |||||||| ||||||||||  |||||||||||||||||||| ||||| ||||| ||||    
T  33135696 gtctcgtggtattcaaaatcattcaaatttcgaaggattgtttaataaattggattttgatggattttgtgggattttgtagtgtaatt 33135784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 264 - 352
Target Start/End: Original strand, 10657479 - 10657567
Alignment:
Q  264 gtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaattttctagtgaaatt 352  Q
    |||| ||||||||||||||||||||||||| ||| |||| ||||||||||  |||||||||||||||||||| ||||| ||||| ||||    
T  10657479 gtcttgtggtattcaaaatcattcaaatttcgaatgattgtttaataaattggattttgatggattttgtgggattttgtagtgtaatt 10657567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 269 - 352
Target Start/End: Original strand, 18177345 - 18177428
Alignment:
Q  269 gtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaattttctagtgaaatt 352  Q
    ||||||||||||||||||||||||| |||||||| |||||| |||  |||||||||||||||||||| ||||| ||||| ||||    
T  18177345 gtggtattcaaaatcattcaaatttcgaaggattgtttaattaattggattttgatggattttgtgggattttgtagtgtaatt 18177428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 269 - 352
Target Start/End: Original strand, 25288237 - 25288320
Alignment:
Q  269 gtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaattttctagtgaaatt 352  Q
    ||||||||||||||||||||||||| |||||||| ||||||||||  |||||||||| ||||||||| ||||| ||||| ||||    
T  25288237 gtggtattcaaaatcattcaaatttcgaaggattgtttaataaattggattttgatgaattttgtgggattttgtagtgtaatt 25288320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 264 - 335
Target Start/End: Complemental strand, 28740420 - 28740349
Alignment:
Q  264 gtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtgg 335  Q
    |||| ||||||||||||||||||||||||| |||||||| ||||||||||  ||||||||||||||||||||    
T  28740420 gtcttgtggtattcaaaatcattcaaatttcgaaggattgtttaataaattggattttgatggattttgtgg 28740349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 264 - 333
Target Start/End: Original strand, 7026677 - 7026746
Alignment:
Q  264 gtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgt 333  Q
    |||| ||||||||||||||||||||||||| |||||||| ||||||||||  ||||||||||||||||||    
T  7026677 gtcttgtggtattcaaaatcattcaaatttcgaaggattgtttaataaattggattttgatggattttgt 7026746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 270 - 333
Target Start/End: Original strand, 379016 - 379079
Alignment:
Q  270 tggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgt 333  Q
    |||||||||||||||||||||||| |||||||| ||||||||||  ||||||||| ||||||||    
T  379016 tggtattcaaaatcattcaaattttgaaggattgtttaataaattggattttgatagattttgt 379079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 270 - 333
Target Start/End: Complemental strand, 13833553 - 13833490
Alignment:
Q  270 tggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgt 333  Q
    |||||||||||||||||||||||| |||||||| ||||||||||  |||||||  |||||||||    
T  13833553 tggtattcaaaatcattcaaattttgaaggattgtttaataaattggattttgtgggattttgt 13833490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 264 - 322
Target Start/End: Complemental strand, 6224684 - 6224626
Alignment:
Q  264 gtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttg 322  Q
    |||| |||||||||||||| |||||||||| |||||||||||||||||||  |||||||    
T  6224684 gtcttgtggtattcaaaattattcaaatttcgaaggattatttaataaattggattttg 6224626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 269 - 331
Target Start/End: Complemental strand, 26601332 - 26601270
Alignment:
Q  269 gtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggatttt 331  Q
    ||||||||||||||||||||||||| ||| | || |||||||||||||||||||  |||||||    
T  26601332 gtggtattcaaaatcattcaaatttcgaatgtttgtttaataaatcagattttgtgggatttt 26601270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 264 - 333
Target Start/End: Original strand, 3463745 - 3463814
Alignment:
Q  264 gtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgt 333  Q
    |||| |||||||| |||||||||||| |||  ||||||| ||||||||||  ||||||||||||||||||    
T  3463745 gtcttgtggtatttaaaatcattcaattttcaaaggattgtttaataaattggattttgatggattttgt 3463814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 53 - 109
Target Start/End: Original strand, 29743313 - 29743370
Alignment:
Q  53 gtgactcagctttttggattttttcctttcaagaacttccc-ttaattagttatgcat 109  Q
    |||||||| |||||||||||||| ||||||||||||||||| ||||||||| ||||||    
T  29743313 gtgactcatctttttggatttttgcctttcaagaacttcccattaattagtgatgcat 29743370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 281 - 352
Target Start/End: Original strand, 43078653 - 43078724
Alignment:
Q  281 atcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaattttctagtgaaatt 352  Q
    ||||||||||||| ||| |||| ||||||||||  |||||| ||||||||||||| ||||| ||||| ||||    
T  43078653 atcattcaaatttcgaatgattgtttaataaattggattttcatggattttgtgggattttatagtgtaatt 43078724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 264 - 322
Target Start/End: Original strand, 3574920 - 3574978
Alignment:
Q  264 gtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttg 322  Q
    |||| ||| ||||||||||||||||||||| |||||||| ||||||||||  |||||||    
T  3574920 gtcttgtgatattcaaaatcattcaaatttcgaaggattgtttaataaattggattttg 3574978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 264 - 313
Target Start/End: Complemental strand, 21370687 - 21370638
Alignment:
Q  264 gtctagtggtattcaaaatcattcaaatttggaaggattatttaataaat 313  Q
    |||| ||||||||||||||||||||||||| |||| ||| ||| ||||||    
T  21370687 gtcttgtggtattcaaaatcattcaaattttgaagtattgtttgataaat 21370638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 273 - 313
Target Start/End: Complemental strand, 10125418 - 10125378
Alignment:
Q  273 tattcaaaatcattcaaatttggaaggattatttaataaat 313  Q
    |||||||||||||||||||||  ||||||| ||||||||||    
T  10125418 tattcaaaatcattcaaatttcaaaggattgtttaataaat 10125378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 82; Significance: 1e-38; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 242 - 352
Target Start/End: Original strand, 1391673 - 1391783
Alignment:
Q  242 gactcttaatcacttnnnnnnngtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaatttt 341  Q
    |||||||||||||||       ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||    
T  1391673 gactcttaatcacttaaaaaaagtctagtggtattcaaaatcattcaaatttggaaggattgtttaataaatcagattttgatggattttgtgggatttt 1391772  T
Q  342 ctagtgaaatt 352  Q
    |||||||||||    
T  1391773 ctagtgaaatt 1391783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 242 - 352
Target Start/End: Complemental strand, 6197634 - 6197524
Alignment:
Q  242 gactcttaatcacttnnnnnnngtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaatttt 341  Q
    |||||||||||||||       |||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| |||||    
T  6197634 gactcttaatcacttaaaaaaagtctagtggtattcaaaatcattcaaatttcgaaggattgtttaataaatcagattttgatggattttgtgggatttt 6197535  T
Q  342 ctagtgaaatt 352  Q
    |||||||||||    
T  6197534 ctagtgaaatt 6197524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 242 - 352
Target Start/End: Original strand, 28002714 - 28002824
Alignment:
Q  242 gactcttaatcacttnnnnnnngtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaatttt 341  Q
    |||||||||||||||       |||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||    
T  28002714 gactcttaatcacttaaaaaaagtctagtgatattcaaaatcattcaaatttggaaggattgtttaataaatcagattttgatggattttgtgaaatttt 28002813  T
Q  342 ctagtgaaatt 352  Q
    |||||||||||    
T  28002814 ctagtgaaatt 28002824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 264 - 352
Target Start/End: Complemental strand, 2300872 - 2300784
Alignment:
Q  264 gtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaattttctagtgaaatt 352  Q
    ||||| ||||||| |||||||||||||||| |||||||| |||||||||| ||||||||||||||||||||| ||||||||||||||||    
T  2300872 gtctactggtattgaaaatcattcaaatttcgaaggattgtttaataaataagattttgatggattttgtgggattttctagtgaaatt 2300784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 264 - 352
Target Start/End: Original strand, 29076670 - 29076758
Alignment:
Q  264 gtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaattttctagtgaaatt 352  Q
    ||||||| |||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| | | ||||||||||||||||    
T  29076670 gtctagtagtattcaaaatcattcaaatttcgaaggattgtttaataaatcagattttgatggattttataggattttctagtgaaatt 29076758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 264 - 352
Target Start/End: Original strand, 29111644 - 29111732
Alignment:
Q  264 gtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaattttctagtgaaatt 352  Q
    ||||||| |||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| | | ||||||||||||||||    
T  29111644 gtctagtagtattcaaaatcattcaaatttcgaaggattgtttaataaatcagattttgatggattttataggattttctagtgaaatt 29111732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 264 - 352
Target Start/End: Original strand, 31895767 - 31895855
Alignment:
Q  264 gtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaattttctagtgaaatt 352  Q
    |||| ||||||||||||||||||||||||| |||||||| ||||||||||  |||||||||||||||||||| ||||||||||| ||||    
T  31895767 gtcttgtggtattcaaaatcattcaaatttcgaaggattgtttaataaattggattttgatggattttgtgggattttctagtgtaatt 31895855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 264 - 352
Target Start/End: Complemental strand, 14262567 - 14262479
Alignment:
Q  264 gtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaattttctagtgaaatt 352  Q
    |||| |||||||||||||||||| |||||| |||||||| ||||||||||  |||||||||||||||||||| ||||| ||||| ||||    
T  14262567 gtcttgtggtattcaaaatcatttaaatttcgaaggattgtttaataaattggattttgatggattttgtgggattttgtagtgtaatt 14262479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 264 - 352
Target Start/End: Complemental strand, 34759184 - 34759096
Alignment:
Q  264 gtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaattttctagtgaaatt 352  Q
    |||| |||||||||||||||||||||||||  ||||||| ||||||||||  |||||||||||||||||||| ||||| ||||| ||||    
T  34759184 gtcttgtggtattcaaaatcattcaaatttccaaggattgtttaataaattggattttgatggattttgtgggattttgtagtgtaatt 34759096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 269 - 341
Target Start/End: Original strand, 34773485 - 34773557
Alignment:
Q  269 gtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaatttt 341  Q
    ||||||||||||||||||||||||| |||||||| ||||||||||  |||||||||||||||||||| |||||    
T  34773485 gtggtattcaaaatcattcaaatttcgaaggattgtttaataaattggattttgatggattttgtgggatttt 34773557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 273 - 352
Target Start/End: Original strand, 7051925 - 7052004
Alignment:
Q  273 tattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaattttctagtgaaatt 352  Q
    ||||||||||||||||||||| |||||||| ||||||||||  |||||||||||||||||| | |||||||||| |||||    
T  7051925 tattcaaaatcattcaaatttcgaaggattgtttaataaattggattttgatggattttgtaggattttctagtaaaatt 7052004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 264 - 336
Target Start/End: Original strand, 7497147 - 7497219
Alignment:
Q  264 gtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtgga 336  Q
    |||| ||||||||||||||||||||||||| |||||| | ||||||||||  |||||||||||||||||||||    
T  7497147 gtcttgtggtattcaaaatcattcaaatttcgaaggagtgtttaataaattggattttgatggattttgtgga 7497219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 264 - 333
Target Start/End: Complemental strand, 30385191 - 30385122
Alignment:
Q  264 gtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgt 333  Q
    |||| ||||||||||||||||||||||||| |||||||| ||||||||||  |||||||  |||||||||    
T  30385191 gtcttgtggtattcaaaatcattcaaatttcgaaggattgtttaataaattggattttgtgggattttgt 30385122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 269 - 333
Target Start/End: Original strand, 31067569 - 31067633
Alignment:
Q  269 gtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgt 333  Q
    ||||||||||||||||||||||||| |||||||| ||||||||||  |||||||  |||||||||    
T  31067569 gtggtattcaaaatcattcaaatttcgaaggattgtttaataaattggattttgtgggattttgt 31067633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 284 - 333
Target Start/End: Complemental strand, 4200541 - 4200492
Alignment:
Q  284 attcaaatttggaaggattatttaataaatcagattttgatggattttgt 333  Q
    |||||||||| |||||||| ||||||||||  ||||||||||||||||||    
T  4200541 attcaaatttcgaaggattgtttaataaattggattttgatggattttgt 4200492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 269 - 313
Target Start/End: Original strand, 3848286 - 3848330
Alignment:
Q  269 gtggtattcaaaatcattcaaatttggaaggattatttaataaat 313  Q
    |||||||||||||||||| |||||| ||| |||| ||||||||||    
T  3848286 gtggtattcaaaatcatttaaattttgaatgattgtttaataaat 3848330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 81; Significance: 5e-38; HSPs: 56)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 264 - 352
Target Start/End: Original strand, 40246915 - 40247003
Alignment:
Q  264 gtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaattttctagtgaaatt 352  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||    
T  40246915 gtctagtggtattcaaaatcattcaaatttggaaggattgtttaataaatcagattttgatggattttgtgggattttctagtgaaatt 40247003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 242 - 352
Target Start/End: Complemental strand, 3206362 - 3206252
Alignment:
Q  242 gactcttaatcacttnnnnnnngtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaatttt 341  Q
    |||||||||||||||       |||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| |||||    
T  3206362 gactcttaatcacttaaaaaaagtctagtggtattcaaaatcattcaaatttcgaaggattgtttaataaatcagattttgatggattttgtgggatttt 3206263  T
Q  342 ctagtgaaatt 352  Q
    |||||||||||    
T  3206262 ctagtgaaatt 3206252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 242 - 352
Target Start/End: Complemental strand, 10139303 - 10139193
Alignment:
Q  242 gactcttaatcacttnnnnnnngtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaatttt 341  Q
    |||||||||||||||       |||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| |||||    
T  10139303 gactcttaatcacttaaaaaaagtctagtggtattcaaaatcattcaaatttcgaaggattgtttaataaatcagattttgatggattttgtgggatttt 10139204  T
Q  342 ctagtgaaatt 352  Q
    |||||||||||    
T  10139203 ctagtgaaatt 10139193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 242 - 352
Target Start/End: Original strand, 20498258 - 20498368
Alignment:
Q  242 gactcttaatcacttnnnnnnngtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaatttt 341  Q
    |||||||||||||||       |||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| |||||    
T  20498258 gactcttaatcacttaaaaaaagtctagtggtattcaaaatcattcaaatttcgaaggattgtttaataaatcagattttgatggattttgtgggatttt 20498357  T
Q  342 ctagtgaaatt 352  Q
    |||||||||||    
T  20498358 ctagtgaaatt 20498368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 264 - 352
Target Start/End: Complemental strand, 996221 - 996133
Alignment:
Q  264 gtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaattttctagtgaaatt 352  Q
    |||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||    
T  996221 gtctagtggtattcaaaatcattcaaatttcgaaggattgtttaataaatcagattttgatggattttgtgggattttctagtgaaatt 996133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 264 - 352
Target Start/End: Original strand, 6589635 - 6589723
Alignment:
Q  264 gtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaattttctagtgaaatt 352  Q
    |||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  6589635 gtctagtggtattcaaaatcattcaaatttcgaagaattatttaataaatcagattttgatggattttgtgggattttctagtgaaatt 6589723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 264 - 352
Target Start/End: Complemental strand, 33807933 - 33807845
Alignment:
Q  264 gtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaattttctagtgaaatt 352  Q
    |||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||    
T  33807933 gtctagtggtattcaaaatcattcaaatttcgaaggattgtttaataaatcagattttgatggattttgtgggattttctagtgaaatt 33807845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 265 - 352
Target Start/End: Complemental strand, 3999779 - 3999692
Alignment:
Q  265 tctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaattttctagtgaaatt 352  Q
    ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||    
T  3999779 tctagtggtattcaaaatcattcaaatttcgaaggattgtttaataaatcagattttgatggattttgtgggattttctagtgaaatt 3999692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 242 - 352
Target Start/End: Original strand, 19253876 - 19253986
Alignment:
Q  242 gactcttaatcacttnnnnnnngtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaatttt 341  Q
    |||||||||||||||       |||||||||||||||||||||||||||||| |||||||| |||||||||| ||||||||||||||||||||| |||||    
T  19253876 gactcttaatcacttaaaaaaagtctagtggtattcaaaatcattcaaatttcgaaggattgtttaataaataagattttgatggattttgtgggatttt 19253975  T
Q  342 ctagtgaaatt 352  Q
    |||||||||||    
T  19253976 ctagtgaaatt 19253986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 242 - 352
Target Start/End: Original strand, 54625641 - 54625751
Alignment:
Q  242 gactcttaatcacttnnnnnnngtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaatttt 341  Q
    |||||||||||||||       ||||||||||||||||||| |||||||||| |||||||| |||||||||||||||||||||||||||||||| |||||    
T  54625641 gactcttaatcacttaaaaaaagtctagtggtattcaaaattattcaaatttcgaaggattgtttaataaatcagattttgatggattttgtgggatttt 54625740  T
Q  342 ctagtgaaatt 352  Q
    |||||||||||    
T  54625741 ctagtgaaatt 54625751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 264 - 352
Target Start/End: Original strand, 29030076 - 29030164
Alignment:
Q  264 gtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaattttctagtgaaatt 352  Q
    |||| ||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||    
T  29030076 gtcttgtggtattcaaaatcattcaaattttgaaggattgtttaataaatcagattttgatggattttgtggaattttctaatgaaatt 29030164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 264 - 352
Target Start/End: Complemental strand, 29448993 - 29448905
Alignment:
Q  264 gtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaattttctagtgaaatt 352  Q
    |||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| |||||||||| |||||    
T  29448993 gtctagtggtattcaaaatcattcaaatttcgaaggattgtttaataaatcagattttgatggattttgtgggattttctagtaaaatt 29448905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 264 - 352
Target Start/End: Complemental strand, 37820612 - 37820524
Alignment:
Q  264 gtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaattttctagtgaaatt 352  Q
    |||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| |||||| |||||||||    
T  37820612 gtctagtggtattcaaaatcattcaaatttcgaaggattgtttaataaatcagattttgatggattttgtgggattttccagtgaaatt 37820524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 265 - 352
Target Start/End: Original strand, 25418438 - 25418525
Alignment:
Q  265 tctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaattttctagtgaaatt 352  Q
    ||||| |||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||    
T  25418438 tctagcggtattcaaaatcattcaaatttgaaaggattgtttaataaatcagattttgatggattttgtgggattttctagtgaaatt 25418525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 242 - 352
Target Start/End: Original strand, 35337784 - 35337894
Alignment:
Q  242 gactcttaatcacttnnnnnnngtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaatttt 341  Q
    |||||||||||||||       ||||||||||||||||||  |||||||||| |||||||| |||||||||||||||||||||||||||||||| |||||    
T  35337784 gactcttaatcacttaaaaaaagtctagtggtattcaaaaaaattcaaatttcgaaggattgtttaataaatcagattttgatggattttgtgggatttt 35337883  T
Q  342 ctagtgaaatt 352  Q
    |||||||||||    
T  35337884 ctagtgaaatt 35337894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 268 - 352
Target Start/End: Complemental strand, 33996672 - 33996588
Alignment:
Q  268 agtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaattttctagtgaaatt 352  Q
    |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| || ||||||||||||||||    
T  33996672 agtggtattcaaaatcattcaaatttcgaaggattgtttaataaatcagattttgatggattttgagggattttctagtgaaatt 33996588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 265 - 352
Target Start/End: Original strand, 22057834 - 22057921
Alignment:
Q  265 tctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaattttctagtgaaatt 352  Q
    |||||||||||| |||||||||||||||| || ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||    
T  22057834 tctagtggtatttaaaatcattcaaatttcgatggattgtttaataaatcagattttgatggattttgtgggattttctagtgaaatt 22057921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 264 - 352
Target Start/End: Original strand, 52114600 - 52114688
Alignment:
Q  264 gtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaattttctagtgaaatt 352  Q
    ||||||||||||||||||| |||||||||| | |||||| ||||||||||||||||||||| ||||||||||||||||||||| |||||    
T  52114600 gtctagtggtattcaaaataattcaaatttcgcaggattgtttaataaatcagattttgatagattttgtggaattttctagtaaaatt 52114688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 265 - 352
Target Start/End: Complemental strand, 51699614 - 51699527
Alignment:
Q  265 tctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaattttctagtgaaatt 352  Q
    ||||||||||||||||||||||||||||| ||||||||  ||||||||| ||||||||||| ||||||||| ||||||||||||||||    
T  51699614 tctagtggtattcaaaatcattcaaatttcgaaggattggttaataaataagattttgatgaattttgtgggattttctagtgaaatt 51699527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 242 - 345
Target Start/End: Complemental strand, 1440109 - 1440006
Alignment:
Q  242 gactcttaatcacttnnnnnnngtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaatttt 341  Q
    |||||||||||||||       ||||||||||||||||||||||||||||||  ||||||| |||||||||||||||||||||||||||| ||| |||||    
T  1440109 gactcttaatcacttaaaaaaagtctagtggtattcaaaatcattcaaatttccaaggattgtttaataaatcagattttgatggattttatgggatttt 1440010  T
Q  342 ctag 345  Q
    ||||    
T  1440009 ctag 1440006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 242 - 352
Target Start/End: Complemental strand, 44762194 - 44762084
Alignment:
Q  242 gactcttaatcacttnnnnnnngtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaatttt 341  Q
    |||||||||||||||       ||||||||||||| ||||| |||||| ||| |||||||| |||||||||||||||||||||||||||||||| |||||    
T  44762194 gactcttaatcacttaaaaaaagtctagtggtatttaaaattattcaagtttcgaaggattgtttaataaatcagattttgatggattttgtgggatttt 44762095  T
Q  342 ctagtgaaatt 352  Q
     ||||||||||    
T  44762094 ttagtgaaatt 44762084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 242 - 352
Target Start/End: Complemental strand, 53929285 - 53929175
Alignment:
Q  242 gactcttaatcacttnnnnnnngtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaatttt 341  Q
    |||||||||||||||       ||||||||||||||||||||||| |||| | ||| |||| |||||||||| ||||||||||||||||||| | |||||    
T  53929285 gactcttaatcacttaaaaaaagtctagtggtattcaaaatcatttaaatatcgaacgattgtttaataaataagattttgatggattttgtaggatttt 53929186  T
Q  342 ctagtgaaatt 352  Q
    |||||||||||    
T  53929185 ctagtgaaatt 53929175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 264 - 352
Target Start/End: Original strand, 18749683 - 18749771
Alignment:
Q  264 gtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaattttctagtgaaatt 352  Q
    |||| ||||||||||||||||||||||||| |||||||| ||||||||||  |||||||||||||||||||| ||||| ||||| ||||    
T  18749683 gtcttgtggtattcaaaatcattcaaatttcgaaggattgtttaataaattggattttgatggattttgtgggattttgtagtgtaatt 18749771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 264 - 352
Target Start/End: Complemental strand, 36674265 - 36674177
Alignment:
Q  264 gtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaattttctagtgaaatt 352  Q
    |||| ||||||||||||||||||||||||| |||||||| ||||||||||  |||||||||||||||||||| ||||| ||||| ||||    
T  36674265 gtcttgtggtattcaaaatcattcaaattttgaaggattgtttaataaattggattttgatggattttgtgggattttgtagtgtaatt 36674177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 264 - 352
Target Start/End: Complemental strand, 52618100 - 52618012
Alignment:
Q  264 gtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaattttctagtgaaatt 352  Q
    |||| ||||||||||||||||||||||||| |||||||| ||||||||||  |||||||||||||||||||| ||||| ||||| ||||    
T  52618100 gtcttgtggtattcaaaatcattcaaatttcgaaggattgtttaataaattggattttgatggattttgtgggattttgtagtgtaatt 52618012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 269 - 352
Target Start/End: Complemental strand, 34484160 - 34484077
Alignment:
Q  269 gtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaattttctagtgaaatt 352  Q
    ||||||||||||||||||||||||| |||||||| ||||||||||  |||||||||||||||||||| ||||| ||||| ||||    
T  34484160 gtggtattcaaaatcattcaaatttcgaaggattgtttaataaattggattttgatggattttgtgggattttgtagtgtaatt 34484077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 270 - 352
Target Start/End: Original strand, 5825139 - 5825221
Alignment:
Q  270 tggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaattttctagtgaaatt 352  Q
    |||||||||||||||||||||||| |||||||| ||||||||||  ||||||||| |||||||||| ||||| ||||||||||    
T  5825139 tggtattcaaaatcattcaaattttgaaggattgtttaataaattggattttgatagattttgtgggattttttagtgaaatt 5825221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 270 - 352
Target Start/End: Original strand, 40897221 - 40897303
Alignment:
Q  270 tggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaattttctagtgaaatt 352  Q
    |||||||||||||||||||||||| |||||||| ||||||||||  |||||||||||||||||||| ||||| ||||| ||||    
T  40897221 tggtattcaaaatcattcaaatttcgaaggattgtttaataaattggattttgatggattttgtgggattttatagtgtaatt 40897303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 264 - 341
Target Start/End: Complemental strand, 51737861 - 51737784
Alignment:
Q  264 gtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaatttt 341  Q
    |||| ||||||||||||||||||||||||| |||||||| ||||||||||  |||||||||||||||||||| |||||    
T  51737861 gtcttgtggtattcaaaatcattcaaatttcgaaggattgtttaataaattggattttgatggattttgtgggatttt 51737784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 264 - 352
Target Start/End: Complemental strand, 6035188 - 6035100
Alignment:
Q  264 gtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaattttctagtgaaatt 352  Q
    |||| ||| ||||||||||||||||||||| |||| | | |||||||||| ||||||||||||||||||||| |||||||||| |||||    
T  6035188 gtctcgtgatattcaaaatcattcaaatttcgaagcaatgtttaataaattagattttgatggattttgtgggattttctagtaaaatt 6035100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 264 - 352
Target Start/End: Original strand, 26107332 - 26107420
Alignment:
Q  264 gtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaattttctagtgaaatt 352  Q
    |||| ||||||||||||||||||||||||| |||||||| ||||||||||  |||||||||||||||||||  ||||| ||||| ||||    
T  26107332 gtcttgtggtattcaaaatcattcaaatttcgaaggattgtttaataaattggattttgatggattttgtgtgattttgtagtgtaatt 26107420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 264 - 352
Target Start/End: Original strand, 32580247 - 32580335
Alignment:
Q  264 gtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaattttctagtgaaatt 352  Q
    |||| ||||||||||||||||||||||||| |||||||| ||||||||||  ||||||||||||||||| || ||||| ||||| ||||    
T  32580247 gtcttgtggtattcaaaatcattcaaatttcgaaggattgtttaataaattggattttgatggattttgagggattttgtagtgtaatt 32580335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 264 - 352
Target Start/End: Complemental strand, 44906648 - 44906560
Alignment:
Q  264 gtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaattttctagtgaaatt 352  Q
    |||| ||||||||||||||||||||||||| |||||||| ||||||||||  |||||||||| ||||||||| ||||| ||||| ||||    
T  44906648 gtcttgtggtattcaaaatcattcaaatttcgaaggattgtttaataaattggattttgatgaattttgtgggattttgtagtgtaatt 44906560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 264 - 352
Target Start/End: Original strand, 48379228 - 48379316
Alignment:
Q  264 gtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaattttctagtgaaatt 352  Q
    |||| ||||||||||||||||||||||||| |||||||| ||||||||||   ||||||||||||||||||| ||||| ||||| ||||    
T  48379228 gtcttgtggtattcaaaatcattcaaatttcgaaggattgtttaataaattgaattttgatggattttgtgggattttgtagtgtaatt 48379316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 264 - 352
Target Start/End: Complemental strand, 50903375 - 50903287
Alignment:
Q  264 gtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaattttctagtgaaatt 352  Q
    |||| ||||||||||||||||||||||||  |||||||| ||||||||||  |||||||||||||||||||| ||||| ||||| ||||    
T  50903375 gtcttgtggtattcaaaatcattcaaattaagaaggattgtttaataaattggattttgatggattttgtgggattttgtagtgtaatt 50903287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 269 - 352
Target Start/End: Original strand, 54628920 - 54629003
Alignment:
Q  269 gtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaattttctagtgaaatt 352  Q
    |||||||||||||||||||||||||  ||||||| ||||||||||  |||||||||||||||||||| ||||| ||||| ||||    
T  54628920 gtggtattcaaaatcattcaaatttcaaaggattgtttaataaattggattttgatggattttgtgggattttgtagtgtaatt 54629003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 264 - 334
Target Start/End: Original strand, 20833063 - 20833133
Alignment:
Q  264 gtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtg 334  Q
    |||| |||||||||||||||||||||||| ||||||||| ||||||||||  |||||||||||||||||||    
T  20833063 gtcttgtggtattcaaaatcattcaaattcggaaggattgtttaataaattggattttgatggattttgtg 20833133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 265 - 331
Target Start/End: Original strand, 52079999 - 52080065
Alignment:
Q  265 tctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggatttt 331  Q
    ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||  |||||||    
T  52079999 tctagtggtattcaaaatcattcaaattttgaaggattgtttaataaatcagattttgtgggatttt 52080065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 264 - 333
Target Start/End: Complemental strand, 10728776 - 10728707
Alignment:
Q  264 gtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgt 333  Q
    |||| |||||||| ||||||||||||||||||||||||| ||||||||||  ||||||||||||||||||    
T  10728776 gtcttgtggtatttaaaatcattcaaatttggaaggattgtttaataaattggattttgatggattttgt 10728707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 269 - 333
Target Start/End: Original strand, 10660611 - 10660675
Alignment:
Q  269 gtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgt 333  Q
    ||||||||||||||||||||||||| |||||||| ||||||||||  ||||||||||||||||||    
T  10660611 gtggtattcaaaatcattcaaatttcgaaggattgtttaataaattggattttgatggattttgt 10660675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 264 - 352
Target Start/End: Original strand, 11431597 - 11431685
Alignment:
Q  264 gtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaattttctagtgaaatt 352  Q
    |||| |||||||||||||||||| |||||| |||||||| ||||||||||  ||||||| |||||||||||| ||||| ||||| ||||    
T  11431597 gtcttgtggtattcaaaatcatttaaatttcgaaggattgtttaataaattggattttggtggattttgtgggattttgtagtgtaatt 11431685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 264 - 352
Target Start/End: Original strand, 17946359 - 17946447
Alignment:
Q  264 gtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaattttctagtgaaatt 352  Q
    |||| ||| |||||||||||||||||||||  ||||||| ||||||||||  |||||||||||||||||||| ||||| ||||| ||||    
T  17946359 gtctcgtgatattcaaaatcattcaaatttcaaaggattgtttaataaattggattttgatggattttgtgggattttgtagtgtaatt 17946447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 264 - 327
Target Start/End: Complemental strand, 539539 - 539476
Alignment:
Q  264 gtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatgga 327  Q
    |||| ||||||||||||||||||||||||| |||||||||||||||||||  ||||||||||||    
T  539539 gtcttgtggtattcaaaatcattcaaatttcgaaggattatttaataaattggattttgatgga 539476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 264 - 331
Target Start/End: Original strand, 27899415 - 27899482
Alignment:
Q  264 gtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggatttt 331  Q
    |||| ||||||||||||||||||||||||| |||||||| |||||||||||||||||||  |||||||    
T  27899415 gtctggtggtattcaaaatcattcaaatttcgaaggattgtttaataaatcagattttgtaggatttt 27899482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 269 - 352
Target Start/End: Complemental strand, 31646414 - 31646331
Alignment:
Q  269 gtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaattttctagtgaaatt 352  Q
    ||||||||||||||||||||||||| ||| |||| |||||| |||  |||||||||||||||||||| ||||| ||||| ||||    
T  31646414 gtggtattcaaaatcattcaaatttcgaaagattgtttaatgaattggattttgatggattttgtgggattttgtagtgtaatt 31646331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #46
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 264 - 341
Target Start/End: Original strand, 52810449 - 52810526
Alignment:
Q  264 gtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaatttt 341  Q
    |||| ||||||||||||||||||||||||| ||| |||| ||||||||||   ||||||||||||||||||| |||||    
T  52810449 gtcttgtggtattcaaaatcattcaaattttgaatgattgtttaataaattgaattttgatggattttgtgggatttt 52810526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #47
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 288 - 352
Target Start/End: Complemental strand, 1440005 - 1439941
Alignment:
Q  288 aaatttggaaggattatttaataaatcagattttgatggattttgtggaattttctagtgaaatt 352  Q
    ||||||||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||    
T  1440005 aaatttggaaggattgtttaataaattagattttgatagattttgtgggattttctagtaaaatt 1439941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #48
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 264 - 333
Target Start/End: Original strand, 39038111 - 39038180
Alignment:
Q  264 gtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgt 333  Q
    |||| ||||||| ||||||||||||||||| |||| ||| ||||||||||  ||||||||||||||||||    
T  39038111 gtcttgtggtatccaaaatcattcaaatttcgaagaattgtttaataaattggattttgatggattttgt 39038180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #49
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 264 - 333
Target Start/End: Complemental strand, 39842619 - 39842550
Alignment:
Q  264 gtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgt 333  Q
    |||| ||| ||||||||||||||||||||| |||| ||| |||||||||| ||||||||| |||||||||    
T  39842619 gtctcgtgatattcaaaatcattcaaatttcgaagaattgtttaataaattagattttgacggattttgt 39842550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #50
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 273 - 352
Target Start/End: Original strand, 55235264 - 55235344
Alignment:
Q  273 tattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatgga-ttttgtggaattttctagtgaaatt 352  Q
    ||||||||||||||||||||| ||| |||| ||||||||||  | |||||||||| |||||||| |||||||| |||||||    
T  55235264 tattcaaaatcattcaaatttcgaaagattgtttaataaattggtttttgatggatttttgtgggattttctaatgaaatt 55235344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #51
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 264 - 322
Target Start/End: Complemental strand, 23753521 - 23753463
Alignment:
Q  264 gtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttg 322  Q
    |||| ||||||||||||||||||||||||| |||||||| ||||||||||  |||||||    
T  23753521 gtcttgtggtattcaaaatcattcaaatttcgaaggattgtttaataaattggattttg 23753463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #52
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 311 - 352
Target Start/End: Complemental strand, 6131321 - 6131280
Alignment:
Q  311 aatcagattttgatggattttgtggaattttctagtgaaatt 352  Q
    ||||||||||||||||||||||||| ||||||||||||||||    
T  6131321 aatcagattttgatggattttgtgggattttctagtgaaatt 6131280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #53
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 264 - 333
Target Start/End: Complemental strand, 50762185 - 50762116
Alignment:
Q  264 gtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgt 333  Q
    |||| ||||||||||||||||||| ||||| ||| |||| ||| ||||||  ||||||||||||||||||    
T  50762185 gtcttgtggtattcaaaatcattctaatttcgaatgattgtttgataaattggattttgatggattttgt 50762116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #54
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 264 - 313
Target Start/End: Original strand, 6975817 - 6975866
Alignment:
Q  264 gtctagtggtattcaaaatcattcaaatttggaaggattatttaataaat 313  Q
    |||| ||||||||||||||||||||||||| |||| |||||||| |||||    
T  6975817 gtcttgtggtattcaaaatcattcaaatttcgaagaattatttactaaat 6975866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #55
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 264 - 313
Target Start/End: Original strand, 37454932 - 37454981
Alignment:
Q  264 gtctagtggtattcaaaatcattcaaatttggaaggattatttaataaat 313  Q
    |||| ||||||||||||||||||||||||| ||| |||| ||||||||||    
T  37454932 gtcttgtggtattcaaaatcattcaaatttcgaatgattgtttaataaat 37454981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #56
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 264 - 320
Target Start/End: Complemental strand, 23535946 - 23535890
Alignment:
Q  264 gtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattt 320  Q
    |||| ||||||||||||||||||||||||| |||||||  |||||| ||| ||||||    
T  23535946 gtcttgtggtattcaaaatcattcaaatttagaaggatcgtttaattaattagattt 23535890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0400 (Bit Score: 78; Significance: 3e-36; HSPs: 1)
Name: scaffold0400
Description:

Target: scaffold0400; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 242 - 352
Target Start/End: Complemental strand, 15190 - 15080
Alignment:
Q  242 gactcttaatcacttnnnnnnngtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaatttt 341  Q
    |||||||||||||||       |||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| |||||    
T  15190 gactcttaatcacttaaaaaaagtctagtggtattcaaaatcattcaaatttcgaaggattgtttaataaatcagattttgatggattttgtgggatttt 15091  T
Q  342 ctagtgaaatt 352  Q
    |||||||||||    
T  15090 ctagtgaaatt 15080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0365 (Bit Score: 78; Significance: 3e-36; HSPs: 1)
Name: scaffold0365
Description:

Target: scaffold0365; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 242 - 352
Target Start/End: Complemental strand, 15833 - 15723
Alignment:
Q  242 gactcttaatcacttnnnnnnngtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaatttt 341  Q
    |||||||||||||||       |||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| |||||    
T  15833 gactcttaatcacttaaaaaaagtctagtggtattcaaaatcattcaaatttcgaaggattgtttaataaatcagattttgatggattttgtgggatttt 15734  T
Q  342 ctagtgaaatt 352  Q
    |||||||||||    
T  15733 ctagtgaaatt 15723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0276 (Bit Score: 78; Significance: 3e-36; HSPs: 1)
Name: scaffold0276
Description:

Target: scaffold0276; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 267 - 352
Target Start/End: Complemental strand, 671 - 586
Alignment:
Q  267 tagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaattttctagtgaaatt 352  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||    
T  671 tagtggtattcaaaatcattcaaatttggaaggattgtttaataaatcatattttgatggattttgtggaattttctagtgaaatt 586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0113 (Bit Score: 78; Significance: 3e-36; HSPs: 1)
Name: scaffold0113
Description:

Target: scaffold0113; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 242 - 352
Target Start/End: Complemental strand, 39052 - 38942
Alignment:
Q  242 gactcttaatcacttnnnnnnngtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaatttt 341  Q
    |||||||||||||||       |||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||    
T  39052 gactcttaatcacttaaaagaagtctagtgatattcaaaatcattcaaatttggaaggattgtttaataaatcagattttgatggattttgtgggatttt 38953  T
Q  342 ctagtgaaatt 352  Q
    |||||||||||    
T  38952 ctagtgaaatt 38942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 78; Significance: 3e-36; HSPs: 35)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 242 - 352
Target Start/End: Complemental strand, 24501969 - 24501859
Alignment:
Q  242 gactcttaatcacttnnnnnnngtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaatttt 341  Q
    |||||||||||||||       |||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| |||||    
T  24501969 gactcttaatcacttaaaaaaagtctagtggtattcaaaatcattcaaatttcgaaggattgtttaataaatcagattttgatggattttgtgggatttt 24501870  T
Q  342 ctagtgaaatt 352  Q
    |||||||||||    
T  24501869 ctagtgaaatt 24501859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 242 - 352
Target Start/End: Original strand, 42937401 - 42937511
Alignment:
Q  242 gactcttaatcacttnnnnnnngtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaatttt 341  Q
    |||||||||||||||       |||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| |||||    
T  42937401 gactcttaatcacttaaaaaaagtctagtggtattcaaaatcattcaaatttcgaaggattgtttaataaatcagattttgatggattttgtgggatttt 42937500  T
Q  342 ctagtgaaatt 352  Q
    |||||||||||    
T  42937501 ctagtgaaatt 42937511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 242 - 352
Target Start/End: Complemental strand, 42938273 - 42938163
Alignment:
Q  242 gactcttaatcacttnnnnnnngtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaatttt 341  Q
    |||||||||||||||       |||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| |||||    
T  42938273 gactcttaatcacttaaaaaaagtctagtggtattcaaaatcattcaaatttcgaaggattgtttaataaatcagattttgatggattttgtgggatttt 42938174  T
Q  342 ctagtgaaatt 352  Q
    |||||||||||    
T  42938173 ctagtgaaatt 42938163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 242 - 352
Target Start/End: Complemental strand, 7507055 - 7506945
Alignment:
Q  242 gactcttaatcacttnnnnnnngtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaatttt 341  Q
    |||||||||||||||       |||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||||| |||||    
T  7507055 gactcttaatcacttaaaaaaagtctagtggtattcaaaaccattcaaattttgaaggattgtttaataaatcagattttgatggattttgtgggatttt 7506956  T
Q  342 ctagtgaaatt 352  Q
    |||||||||||    
T  7506955 ctagtgaaatt 7506945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 242 - 352
Target Start/End: Complemental strand, 26374586 - 26374476
Alignment:
Q  242 gactcttaatcacttnnnnnnngtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaatttt 341  Q
    |||||||||||||||       |||||||||||||||||||||||||||||| |||||||| |||||||||| ||||||||||||||||||||| |||||    
T  26374586 gactcttaatcacttaaaaaaagtctagtggtattcaaaatcattcaaatttcgaaggattgtttaataaataagattttgatggattttgtgggatttt 26374487  T
Q  342 ctagtgaaatt 352  Q
    |||||||||||    
T  26374486 ctagtgaaatt 26374476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 242 - 352
Target Start/End: Complemental strand, 42735433 - 42735323
Alignment:
Q  242 gactcttaatcacttnnnnnnngtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaatttt 341  Q
    |||||||||||||||       |||||||||||||||||||||||||||||| |||| ||| |||||||||||||||||||||||||||||||| |||||    
T  42735433 gactcttaatcacttaaaaaaagtctagtggtattcaaaatcattcaaatttcgaagtattgtttaataaatcagattttgatggattttgtgggatttt 42735334  T
Q  342 ctagtgaaatt 352  Q
    |||||||||||    
T  42735333 ctagtgaaatt 42735323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 264 - 352
Target Start/End: Complemental strand, 10392371 - 10392283
Alignment:
Q  264 gtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaattttctagtgaaatt 352  Q
    ||||||||||||||| |||||||||||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||    
T  10392371 gtctagtggtattcagaatcattcaaatttcgaaggattgtttaataaatcagattttgatggattttgtgggattttctagtgaaatt 10392283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 242 - 352
Target Start/End: Complemental strand, 23115324 - 23115215
Alignment:
Q  242 gactcttaatcacttnnnnnnngtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaatttt 341  Q
    |||||||||||||||       ||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||    
T  23115324 gactcttaatcacttaaaaaaagtctagtggtattcaaa-tcattcaaatttggaaggattgtttaataaatcagattttgatggattttgtgggatttt 23115226  T
Q  342 ctagtgaaatt 352  Q
    ||| |||||||    
T  23115225 ctaatgaaatt 23115215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 242 - 348
Target Start/End: Complemental strand, 2704975 - 2704869
Alignment:
Q  242 gactcttaatcacttnnnnnnngtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaatttt 341  Q
    |||||||||||||||       |||||||||||||||||||||||||||||| ||| |||| |||||||||||| ||||||||||||||||||| |||||    
T  2704975 gactcttaatcacttaaaaaaagtctagtggtattcaaaatcattcaaatttcgaatgattgtttaataaatcaaattttgatggattttgtgggatttt 2704876  T
Q  342 ctagtga 348  Q
    |||||||    
T  2704875 ctagtga 2704869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 268 - 352
Target Start/End: Complemental strand, 5576750 - 5576666
Alignment:
Q  268 agtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaattttctagtgaaatt 352  Q
    |||||||||||||||||||||||||| |||| ||| ||||||||| |||||||||||||||||||||| ||||||||||||||||    
T  5576750 agtggtattcaaaatcattcaaatttcgaagaattgtttaataaaccagattttgatggattttgtgggattttctagtgaaatt 5576666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 271 - 352
Target Start/End: Complemental strand, 4950143 - 4950062
Alignment:
Q  271 ggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaattttctagtgaaatt 352  Q
    ||||||||||||||||||| |||  || ||||||||||||||| ||||||||||||| ||||||||||||||||||||||||    
T  4950143 ggtattcaaaatcattcaagtttcaaaagattatttaataaattagattttgatggaatttgtggaattttctagtgaaatt 4950062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 266 - 335
Target Start/End: Original strand, 43959731 - 43959800
Alignment:
Q  266 ctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtgg 335  Q
    |||||||||||||||||||||||||||| ||| |||| ||||||||||||||||||||||||||||||||    
T  43959731 ctagtggtattcaaaatcattcaaatttcgaatgattgtttaataaatcagattttgatggattttgtgg 43959800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 264 - 352
Target Start/End: Complemental strand, 14782269 - 14782181
Alignment:
Q  264 gtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaattttctagtgaaatt 352  Q
    |||| ||||||||||||||||||||||||| |||||||| ||||||||||  |||||||||||||||||||| ||||| ||||| ||||    
T  14782269 gtcttgtggtattcaaaatcattcaaattttgaaggattgtttaataaattggattttgatggattttgtgggattttgtagtgtaatt 14782181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 264 - 352
Target Start/End: Complemental strand, 44725944 - 44725856
Alignment:
Q  264 gtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaattttctagtgaaatt 352  Q
    |||| ||||||||||||||||||||||||| |||||||| ||||||||||  |||||||||||||||||||| ||||| ||||| ||||    
T  44725944 gtcttgtggtattcaaaatcattcaaattttgaaggattgtttaataaattggattttgatggattttgtgggattttgtagtgtaatt 44725856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 264 - 341
Target Start/End: Complemental strand, 43166824 - 43166747
Alignment:
Q  264 gtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaatttt 341  Q
    |||| ||||||||||||||||||||||||| |||||||| ||||||||||  |||||||||||||||||||| |||||    
T  43166824 gtcttgtggtattcaaaatcattcaaatttcgaaggattgtttaataaattggattttgatggattttgtgggatttt 43166747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 264 - 352
Target Start/End: Complemental strand, 9288591 - 9288503
Alignment:
Q  264 gtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaattttctagtgaaatt 352  Q
    |||| ||||||||||||||||||||||||| |||||||| ||||||||||  |||||||||| ||||||||| ||||| ||||| ||||    
T  9288591 gtcttgtggtattcaaaatcattcaaatttcgaaggattgtttaataaattggattttgatgaattttgtgggattttgtagtgtaatt 9288503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 264 - 352
Target Start/End: Complemental strand, 18958861 - 18958773
Alignment:
Q  264 gtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaattttctagtgaaatt 352  Q
    |||| ||||||||||||||||||||||||| |||||||| ||||||||||  |||||| ||||||||||||| ||||| ||||| ||||    
T  18958861 gtcttgtggtattcaaaatcattcaaatttcgaaggattgtttaataaattggattttaatggattttgtgggattttgtagtgtaatt 18958773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 264 - 352
Target Start/End: Original strand, 26856139 - 26856227
Alignment:
Q  264 gtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaattttctagtgaaatt 352  Q
    |||| ||||||||||||||||||||||||| |||| ||| ||||||||||  |||||||||||||||||||| ||||| ||||| ||||    
T  26856139 gtcttgtggtattcaaaatcattcaaatttcgaagtattgtttaataaattggattttgatggattttgtgggattttgtagtgtaatt 26856227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 269 - 352
Target Start/End: Original strand, 4403184 - 4403267
Alignment:
Q  269 gtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaattttctagtgaaatt 352  Q
    ||||||||||||||||||||||||| |||||||| ||||||||||  | |||||||||||||||||| ||||| ||||| ||||    
T  4403184 gtggtattcaaaatcattcaaatttcgaaggattgtttaataaattgggttttgatggattttgtgggattttttagtgtaatt 4403267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 264 - 352
Target Start/End: Complemental strand, 10295515 - 10295426
Alignment:
Q  264 gtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatgga-ttttgtggaattttctagtgaaatt 352  Q
    |||| ||||||||||||||||||||||||| |||||||| ||||||||||  |||||||||||| |||||||| ||||| ||||| ||||    
T  10295515 gtcttgtggtattcaaaatcattcaaatttcgaaggattgtttaataaattggattttgatggatttttgtgggattttgtagtgtaatt 10295426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 264 - 333
Target Start/End: Original strand, 16362268 - 16362337
Alignment:
Q  264 gtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgt 333  Q
    |||| ||||||||||||||||||||||||| |||||||| ||||||||||  ||||||||||||||||||    
T  16362268 gtctcgtggtattcaaaatcattcaaatttcgaaggattgtttaataaattggattttgatggattttgt 16362337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 264 - 352
Target Start/End: Complemental strand, 19718015 - 19717927
Alignment:
Q  264 gtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaattttctagtgaaatt 352  Q
    |||| ||||||||||||||||||||||||| |||| ||| ||||||||||  |||||| ||||||||||||| ||||| ||||| ||||    
T  19718015 gtcttgtggtattcaaaatcattcaaatttcgaagaattgtttaataaattggattttaatggattttgtgggattttgtagtgtaatt 19717927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 264 - 352
Target Start/End: Complemental strand, 39467602 - 39467514
Alignment:
Q  264 gtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaattttctagtgaaatt 352  Q
    |||| ||||||||||||||||||||||||| |||||||| ||||||||||   ||||||||||||||| ||| ||||| ||||| ||||    
T  39467602 gtcttgtggtattcaaaatcattcaaatttcgaaggattgtttaataaattgaattttgatggattttatgggattttgtagtgtaatt 39467514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 242 - 322
Target Start/End: Complemental strand, 32711438 - 32711358
Alignment:
Q  242 gactcttaatcacttnnnnnnngtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttg 322  Q
    |||||||||||||||       ||||||||||||||||||||||| |||||| |||||||| |||||||||||||||||||    
T  32711438 gactcttaatcacttaaaaaaagtctagtggtattcaaaatcatttaaatttcgaaggattgtttaataaatcagattttg 32711358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 242 - 331
Target Start/End: Original strand, 41479147 - 41479236
Alignment:
Q  242 gactcttaatcacttnnnnnnngtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggatttt 331  Q
    |||||||||||||||       ||||| |||||||||||||||||||||||| ||| |||| |||||||||||||||||||  |||||||    
T  41479147 gactcttaatcacttaaaaaaagtctaatggtattcaaaatcattcaaatttcgaatgattgtttaataaatcagattttgtgggatttt 41479236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 270 - 341
Target Start/End: Complemental strand, 8410526 - 8410455
Alignment:
Q  270 tggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaatttt 341  Q
    ||||||||||||||||| ||||||||||||||| |||| |||||  || ||||||||||||||||| |||||    
T  8410526 tggtattcaaaatcattgaaatttggaaggattgtttactaaattggactttgatggattttgtgggatttt 8410455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 264 - 333
Target Start/End: Original strand, 37857191 - 37857260
Alignment:
Q  264 gtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgt 333  Q
    |||| |||||||||||| ||||||||||||  ||||||| ||||||||||  ||||||||||||||||||    
T  37857191 gtcttgtggtattcaaattcattcaaattttaaaggattgtttaataaattggattttgatggattttgt 37857260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 264 - 322
Target Start/End: Complemental strand, 4031392 - 4031334
Alignment:
Q  264 gtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttg 322  Q
    |||| ||||||||||||||||||||||||| |||||||| ||||||||||  |||||||    
T  4031392 gtcttgtggtattcaaaatcattcaaatttcgaaggattgtttaataaattggattttg 4031334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 264 - 322
Target Start/End: Original strand, 31623767 - 31623825
Alignment:
Q  264 gtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttg 322  Q
    |||| ||||||||||||||||||||||||| |||||||| ||||||||||  |||||||    
T  31623767 gtcttgtggtattcaaaatcattcaaatttcgaaggattgtttaataaattggattttg 31623825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 272 - 346
Target Start/End: Complemental strand, 39189940 - 39189867
Alignment:
Q  272 gtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaattttctagt 346  Q
    |||||||| ||||||||||||| |||||||| ||||||||||  || ||||||||||||||  ||||||||||||    
T  39189940 gtattcaacatcattcaaatttcgaaggattgtttaataaat-tgaatttgatggattttgatgaattttctagt 39189867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 264 - 333
Target Start/End: Original strand, 7466407 - 7466476
Alignment:
Q  264 gtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgt 333  Q
    |||| ||||||||||||||||||||||||| |||| ||| ||||||||||  |||||||  |||||||||    
T  7466407 gtcttgtggtattcaaaatcattcaaattttgaagaattgtttaataaattggattttgtgggattttgt 7466476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 264 - 333
Target Start/End: Complemental strand, 18306095 - 18306026
Alignment:
Q  264 gtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgt 333  Q
    |||| ||||||||||||||||||||||||| ||| |||| ||||||||||  |||||||  |||||||||    
T  18306095 gtcttgtggtattcaaaatcattcaaatttcgaaagattgtttaataaattggattttgtgggattttgt 18306026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 264 - 333
Target Start/End: Original strand, 32497597 - 32497666
Alignment:
Q  264 gtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgt 333  Q
    |||| ||||||||||||||||||||||||| ||| |||| ||||||||||  |||||||  |||||||||    
T  32497597 gtcttgtggtattcaaaatcattcaaatttcgaatgattgtttaataaattggattttgtgggattttgt 32497666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 269 - 333
Target Start/End: Complemental strand, 42305914 - 42305850
Alignment:
Q  269 gtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgt 333  Q
    |||||||||||||| |||||||||| |||||||| |||||| |||  |||||| |||||||||||    
T  42305914 gtggtattcaaaataattcaaatttcgaaggattgtttaatcaattggattttaatggattttgt 42305850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 272 - 333
Target Start/End: Complemental strand, 13478376 - 13478315
Alignment:
Q  272 gtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgt 333  Q
    |||||||||||| || |||||| |||||||| |||||||||| |||||| | ||||||||||    
T  13478376 gtattcaaaatcttttaaatttcgaaggattgtttaataaattagatttcgttggattttgt 13478315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 78; Significance: 3e-36; HSPs: 57)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 242 - 352
Target Start/End: Complemental strand, 7718518 - 7718408
Alignment:
Q  242 gactcttaatcacttnnnnnnngtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaatttt 341  Q
    |||||||||||||||       |||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| |||||    
T  7718518 gactcttaatcacttaaaaaaagtctagtggtattcaaaatcattcaaatttcgaaggattgtttaataaatcagattttgatggattttgtgggatttt 7718419  T
Q  342 ctagtgaaatt 352  Q
    |||||||||||    
T  7718418 ctagtgaaatt 7718408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 242 - 352
Target Start/End: Original strand, 30440847 - 30440957
Alignment:
Q  242 gactcttaatcacttnnnnnnngtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaatttt 341  Q
    |||||||||||||||       |||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| |||||    
T  30440847 gactcttaatcacttaaaaaaagtctagtggtattcaaaatcattcaaatttcgaaggattgtttaataaatcagattttgatggattttgtgggatttt 30440946  T
Q  342 ctagtgaaatt 352  Q
    |||||||||||    
T  30440947 ctagtgaaatt 30440957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 242 - 352
Target Start/End: Complemental strand, 43581246 - 43581136
Alignment:
Q  242 gactcttaatcacttnnnnnnngtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaatttt 341  Q
    |||||||||||||||       |||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| |||||    
T  43581246 gactcttaatcacttaaaaaaagtctagtggtattcaaaatcattcaaatttcgaaggattgtttaataaatcagattttgatggattttgtgggatttt 43581147  T
Q  342 ctagtgaaatt 352  Q
    |||||||||||    
T  43581146 ctagtgaaatt 43581136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 267 - 352
Target Start/End: Original strand, 973260 - 973345
Alignment:
Q  267 tagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaattttctagtgaaatt 352  Q
    ||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||    
T  973260 tagtggtattcaaaatcattcaaatttcgaaggattgtttaataaatcagattttgatggattttgtgggattttctagtgaaatt 973345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 242 - 352
Target Start/End: Original strand, 47879219 - 47879329
Alignment:
Q  242 gactcttaatcacttnnnnnnngtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaatttt 341  Q
    |||||||||||||||       |||||||| |||||||||||||||||||||  ||||||| ||||||||||||||||||||||||||||||||||||||    
T  47879219 gactcttaatcacttaaaaaaagtctagtgatattcaaaatcattcaaatttaaaaggattgtttaataaatcagattttgatggattttgtggaatttt 47879318  T
Q  342 ctagtgaaatt 352  Q
    |||||||||||    
T  47879319 ctagtgaaatt 47879329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 264 - 352
Target Start/End: Complemental strand, 40996783 - 40996695
Alignment:
Q  264 gtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaattttctagtgaaatt 352  Q
    |||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| | ||||||||||||||||    
T  40996783 gtctagtggtattcaaaatcattcaaatttcgaaggattgtttaataaatcagattttgatggattttgtaggattttctagtgaaatt 40996695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 268 - 352
Target Start/End: Original strand, 43679491 - 43679575
Alignment:
Q  268 agtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaattttctagtgaaatt 352  Q
    |||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||    
T  43679491 agtggtattcaaaatcattcaaatttcgaaggattgtttaataaatcagattttgatggattttgtgggattttctagtgaaatt 43679575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 265 - 352
Target Start/End: Complemental strand, 7719393 - 7719306
Alignment:
Q  265 tctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaattttctagtgaaatt 352  Q
    ||||||||||||||||||||||||||||| ||| |||| |||||||||||||||||||||||||||||||| ||||||||||||||||    
T  7719393 tctagtggtattcaaaatcattcaaatttcgaatgattgtttaataaatcagattttgatggattttgtgggattttctagtgaaatt 7719306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 269 - 352
Target Start/End: Complemental strand, 32143046 - 32142963
Alignment:
Q  269 gtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaattttctagtgaaatt 352  Q
    ||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||    
T  32143046 gtggtattcaaaatcattcaaattttgaaggattgtttaataaatcagattttgatggattttgtgggattttctagtgaaatt 32142963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 266 - 344
Target Start/End: Original strand, 34009088 - 34009166
Alignment:
Q  266 ctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaattttcta 344  Q
    |||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||    
T  34009088 ctagtggtattcaaaatcattcaaatttcgaaggattgtttaataaatcagattttgatggattttgtggaattttcta 34009166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 242 - 352
Target Start/End: Complemental strand, 18914891 - 18914781
Alignment:
Q  242 gactcttaatcacttnnnnnnngtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaatttt 341  Q
    |||||||||||||||       ||||||||||||||||||||||||||||||  |||| || |||||||||||||||||||||||||||||||| |||||    
T  18914891 gactcttaatcacttaaaaaaagtctagtggtattcaaaatcattcaaatttcaaaggtttgtttaataaatcagattttgatggattttgtgggatttt 18914792  T
Q  342 ctagtgaaatt 352  Q
    |||||||||||    
T  18914791 ctagtgaaatt 18914781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 242 - 352
Target Start/End: Original strand, 34695324 - 34695434
Alignment:
Q  242 gactcttaatcacttnnnnnnngtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaatttt 341  Q
    |||||||||||||||       ||| |||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||||| |||||    
T  34695324 gactcttaatcacttaaaaaaagtccagtggtattcaaaaccattcaaatttcgaaggattgtttaataaatcagattttgatggattttgtgggatttt 34695423  T
Q  342 ctagtgaaatt 352  Q
    |||||||||||    
T  34695424 ctagtgaaatt 34695434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 267 - 352
Target Start/End: Complemental strand, 44343527 - 44343442
Alignment:
Q  267 tagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaattttctagtgaaatt 352  Q
    |||||||||| |||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||    
T  44343527 tagtggtatttaaaatcattcaaatttcgaaggattgtttaataaatcagattttgatggattttgtgggattttctagtgaaatt 44343442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 242 - 352
Target Start/End: Original strand, 47914317 - 47914427
Alignment:
Q  242 gactcttaatcacttnnnnnnngtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaatttt 341  Q
    |||||||||||||||       |||||||| ||||||||||||||||||||| |||||||| |||||||||| ||||||||||||||||||||| |||||    
T  47914317 gactcttaatcacttaaaaaaagtctagtgatattcaaaatcattcaaatttcgaaggattgtttaataaataagattttgatggattttgtgggatttt 47914416  T
Q  342 ctagtgaaatt 352  Q
    |||||||||||    
T  47914417 ctagtgaaatt 47914427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 270 - 352
Target Start/End: Complemental strand, 20275391 - 20275309
Alignment:
Q  270 tggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaattttctagtgaaatt 352  Q
    |||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||    
T  20275391 tggtattcaaaatcattcaaatttcgaaggattgtttaataaatcagattttgatggattttgtgggattttttagtgaaatt 20275309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 242 - 352
Target Start/End: Original strand, 12893459 - 12893569
Alignment:
Q  242 gactcttaatcacttnnnnnnngtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaatttt 341  Q
    |||||||||||||||       ||||| |||||||||||||||||||||||| |||| ||| |||||||||||||||||||||||||||||||  |||||    
T  12893459 gactcttaatcacttaaaaaaagtctaatggtattcaaaatcattcaaatttcgaagaattgtttaataaatcagattttgatggattttgtgagatttt 12893558  T
Q  342 ctagtgaaatt 352  Q
    |||||||||||    
T  12893559 ctagtgaaatt 12893569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 264 - 352
Target Start/End: Original strand, 10068533 - 10068621
Alignment:
Q  264 gtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaattttctagtgaaatt 352  Q
    |||| ||||||||||||||||||||||||| |||||||| |||||||||| | ||||||||||||||||||| ||||||||||||||||    
T  10068533 gtcttgtggtattcaaaatcattcaaattttgaaggattgtttaataaattaaattttgatggattttgtgggattttctagtgaaatt 10068621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 264 - 352
Target Start/End: Original strand, 12963767 - 12963855
Alignment:
Q  264 gtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaattttctagtgaaatt 352  Q
    |||| ||||||| ||||||||||||||||| |||||||| |||||||||| ||||||||||||||||||||| ||||||||||||||||    
T  12963767 gtctcgtggtatccaaaatcattcaaatttcgaaggattgtttaataaattagattttgatggattttgtgggattttctagtgaaatt 12963855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 242 - 352
Target Start/End: Complemental strand, 39219532 - 39219423
Alignment:
Q  242 gactcttaatcacttnnnnnnngtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaatttt 341  Q
    |||||||||||||||       ||||| |||||||||||||||||||||||| || | ||| |||||||||||||||||||||||||||||||| |||||    
T  39219532 gactcttaatcacttaaaaaaagtctattggtattcaaaatcattcaaattttgatg-attgtttaataaatcagattttgatggattttgtgggatttt 39219434  T
Q  342 ctagtgaaatt 352  Q
    |||||||||||    
T  39219433 ctagtgaaatt 39219423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 242 - 331
Target Start/End: Original strand, 31638926 - 31639015
Alignment:
Q  242 gactcttaatcacttnnnnnnngtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggatttt 331  Q
    |||||||||||||||       |||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||    
T  31638926 gactcttaatcacttaaaaaaagtctagtggtattcaaaatcattcaaatttcgaaggattgtttaataaatcagattttgatggatttt 31639015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 264 - 352
Target Start/End: Original strand, 3022992 - 3023080
Alignment:
Q  264 gtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaattttctagtgaaatt 352  Q
    |||| ||||||||||||||||||||||||| |||||||| ||||||||||  |||||||||||||||||||| ||||| ||||| ||||    
T  3022992 gtcttgtggtattcaaaatcattcaaatttcgaaggattgtttaataaattggattttgatggattttgtgggattttgtagtgtaatt 3023080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 264 - 352
Target Start/End: Original strand, 23101364 - 23101452
Alignment:
Q  264 gtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaattttctagtgaaatt 352  Q
    |||| ||||||||||||||||||||||||| |||||||| ||||||||||  |||||||||||||||||||| ||||| ||||| ||||    
T  23101364 gtcttgtggtattcaaaatcattcaaatttcgaaggattgtttaataaattggattttgatggattttgtgggattttgtagtgtaatt 23101452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 264 - 352
Target Start/End: Original strand, 28342413 - 28342501
Alignment:
Q  264 gtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaattttctagtgaaatt 352  Q
    |||| ||||||||||||||||||||||||| |||||||| ||||||||||  |||||||||||||||||||| ||||| ||||| ||||    
T  28342413 gtcttgtggtattcaaaatcattcaaatttcgaaggattgtttaataaattggattttgatggattttgtgggattttgtagtgtaatt 28342501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 268 - 345
Target Start/End: Original strand, 7113529 - 7113606
Alignment:
Q  268 agtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaattttctag 345  Q
    ||||||||||||||| |||||||||| | |||||| ||||||||||||||||||||| |||||||||| |||||||||    
T  7113529 agtggtattcaaaataattcaaatttcgcaggattgtttaataaatcagattttgatagattttgtgggattttctag 7113606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 264 - 352
Target Start/End: Complemental strand, 9882370 - 9882282
Alignment:
Q  264 gtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaattttctagtgaaatt 352  Q
    |||| ||||||||||||||||||||||||| ||| |||| ||||||||||  |||||||||||||||||||| ||||| ||||| ||||    
T  9882370 gtcttgtggtattcaaaatcattcaaatttcgaatgattgtttaataaattggattttgatggattttgtgggattttgtagtgtaatt 9882282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 272 - 352
Target Start/End: Complemental strand, 10676546 - 10676466
Alignment:
Q  272 gtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaattttctagtgaaatt 352  Q
    |||||||||||||||||||||| |||||||| ||||||||||  ||||| |||||||||| ||||||||||| ||||||||    
T  10676546 gtattcaaaatcattcaaatttcgaaggattgtttaataaattggatttggatggattttatggaattttcttgtgaaatt 10676466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 264 - 352
Target Start/End: Original strand, 18838455 - 18838543
Alignment:
Q  264 gtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaattttctagtgaaatt 352  Q
    |||| ||||||||||||||||||||||||| ||| |||| ||||||||||  |||||||||||||||||||| ||||| ||||| ||||    
T  18838455 gtcttgtggtattcaaaatcattcaaatttcgaaagattgtttaataaattggattttgatggattttgtgggattttgtagtgtaatt 18838543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 264 - 352
Target Start/End: Complemental strand, 29614898 - 29614810
Alignment:
Q  264 gtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaattttctagtgaaatt 352  Q
    |||| ||| ||||||||||||||||||||| |||||||| ||||||||||  |||||||||||||||||||| ||||| ||||| ||||    
T  29614898 gtcttgtgatattcaaaatcattcaaatttcgaaggattgtttaataaattggattttgatggattttgtgggattttgtagtgtaatt 29614810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 264 - 352
Target Start/End: Original strand, 39784165 - 39784253
Alignment:
Q  264 gtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaattttctagtgaaatt 352  Q
    |||| |||||||||||||||||| |||||| |||||||| ||||||||||  |||||||||||||||||||| ||||| ||||| ||||    
T  39784165 gtcttgtggtattcaaaatcatttaaatttcgaaggattgtttaataaattggattttgatggattttgtgggattttgtagtgtaatt 39784253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 270 - 352
Target Start/End: Original strand, 33382709 - 33382791
Alignment:
Q  270 tggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaattttctagtgaaatt 352  Q
    ||||||||||||||||| |||||| |||||||| ||||||||||  |||||||||||||||||||| ||||| ||||| ||||    
T  33382709 tggtattcaaaatcatttaaatttcgaaggattgtttaataaattggattttgatggattttgtgggattttgtagtgtaatt 33382791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 270 - 352
Target Start/End: Complemental strand, 43187485 - 43187403
Alignment:
Q  270 tggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaattttctagtgaaatt 352  Q
    |||||||||||||||||||||||| |||| ||| ||||||||||  |||||||||| ||||||| | ||||||||||||||||    
T  43187485 tggtattcaaaatcattcaaattttgaagcattgtttaataaattggattttgatgaattttgtcggattttctagtgaaatt 43187403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 264 - 352
Target Start/End: Original strand, 8675399 - 8675487
Alignment:
Q  264 gtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaattttctagtgaaatt 352  Q
    |||| |||||||||||||||||| ||| || |||||||| ||||||||||  |||||||||||||||||||| ||||| ||||| ||||    
T  8675399 gtcttgtggtattcaaaatcatttaaacttcgaaggattgtttaataaattggattttgatggattttgtgggattttgtagtgtaatt 8675487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 264 - 352
Target Start/End: Complemental strand, 28034939 - 28034851
Alignment:
Q  264 gtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaattttctagtgaaatt 352  Q
    |||| |||||||||||||| ||||||||||  ||||||| ||||||||||  |||||||||||||||||||| ||||| ||||| ||||    
T  28034939 gtcttgtggtattcaaaattattcaaatttcaaaggattgtttaataaattggattttgatggattttgtgggattttgtagtgtaatt 28034851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 269 - 333
Target Start/End: Complemental strand, 44122029 - 44121965
Alignment:
Q  269 gtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgt 333  Q
    ||||||||||||||||||||||||| |||||||| ||||||||||  ||||||||||||||||||    
T  44122029 gtggtattcaaaatcattcaaatttcgaaggattgtttaataaattggattttgatggattttgt 44121965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 264 - 331
Target Start/End: Original strand, 19251605 - 19251672
Alignment:
Q  264 gtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggatttt 331  Q
    |||| ||||||||||||||||||||||||| |||||||| ||||||||||  ||||||||||||||||    
T  19251605 gtctcgtggtattcaaaatcattcaaatttcgaaggattgtttaataaattggattttgatggatttt 19251672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 270 - 352
Target Start/End: Original strand, 7993214 - 7993296
Alignment:
Q  270 tggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaattttctagtgaaatt 352  Q
    |||||||||||||||||||||||| |||||||| ||||||||||   ||||||||||||| ||||| ||||| ||||| ||||    
T  7993214 tggtattcaaaatcattcaaatttcgaaggattgtttaataaattgaattttgatggattgtgtgggattttgtagtgtaatt 7993296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 264 - 333
Target Start/End: Original strand, 509722 - 509791
Alignment:
Q  264 gtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgt 333  Q
    |||| ||||||||||||||||||||||||| ||| |||| ||||||||||  ||||||||||||||||||    
T  509722 gtcttgtggtattcaaaatcattcaaatttcgaacgattgtttaataaattggattttgatggattttgt 509791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 264 - 333
Target Start/End: Complemental strand, 40460841 - 40460772
Alignment:
Q  264 gtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgt 333  Q
    |||| ||||||||||||||||||||||||| ||| |||| ||||||||||  ||||||||||||||||||    
T  40460841 gtcttgtggtattcaaaatcattcaaatttcgaatgattgtttaataaattggattttgatggattttgt 40460772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 264 - 352
Target Start/End: Original strand, 12740439 - 12740526
Alignment:
Q  264 gtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaattttctagtgaaatt 352  Q
    |||| |||||||||||||||||||||||||  ||||||| ||||||||||  ||||||||| |||||||||| ||||| ||||| ||||    
T  12740439 gtctcgtggtattcaaaatcattcaaatttcaaaggattgtttaataaat-ggattttgatagattttgtgggattttatagtgtaatt 12740526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 264 - 352
Target Start/End: Original strand, 32883848 - 32883936
Alignment:
Q  264 gtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaattttctagtgaaatt 352  Q
    |||| ||||||||||||||||||||||||| ||| |||| |||| |||||  ||||||||||||||| |||| ||||| ||||| ||||    
T  32883848 gtcttgtggtattcaaaatcattcaaatttcgaatgattgtttattaaattggattttgatggatttcgtgggattttgtagtgtaatt 32883936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #41
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 269 - 344
Target Start/End: Original strand, 25805763 - 25805838
Alignment:
Q  269 gtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaattttcta 344  Q
    ||||||||||||||||||||||||| | |||||| ||||||||||   ||| ||||||||||||||| ||||||||    
T  25805763 gtggtattcaaaatcattcaaatttcgtaggattgtttaataaattgaattatgatggattttgtgggattttcta 25805838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #42
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 270 - 333
Target Start/End: Original strand, 29585586 - 29585649
Alignment:
Q  270 tggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgt 333  Q
    |||||||||||||||||||||||| |||||||| |||||||| |  ||||||||||||||||||    
T  29585586 tggtattcaaaatcattcaaattttgaaggattgtttaataatttggattttgatggattttgt 29585649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #43
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 264 - 335
Target Start/End: Complemental strand, 46405565 - 46405494
Alignment:
Q  264 gtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtgg 335  Q
    |||| |||||||||||||||||||||||||  || |||| ||||||||||  ||||||||||||||||||||    
T  46405565 gtcttgtggtattcaaaatcattcaaatttcaaatgattgtttaataaattggattttgatggattttgtgg 46405494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #44
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 265 - 331
Target Start/End: Original strand, 727587 - 727653
Alignment:
Q  265 tctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggatttt 331  Q
    |||||| ||||||||||||||||||||||  ||||||| |||||||||||||||||||  |||||||    
T  727587 tctagtagtattcaaaatcattcaaatttcaaaggattgtttaataaatcagattttgtgggatttt 727653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #45
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 264 - 333
Target Start/End: Original strand, 37327993 - 37328062
Alignment:
Q  264 gtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgt 333  Q
    |||| |||||||||||||||||||||||||  ||||||| ||||||||||   |||||||||||||||||    
T  37327993 gtcttgtggtattcaaaatcattcaaatttcaaaggattgtttaataaattgaattttgatggattttgt 37328062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #46
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 284 - 352
Target Start/End: Complemental strand, 37972981 - 37972913
Alignment:
Q  284 attcaaatttggaaggattatttaataaatcagattttgatggattttgtggaattttctagtgaaatt 352  Q
    |||||||||| |||||||||||||||||||  ||||||||||||||||| || ||||| ||||| ||||    
T  37972981 attcaaatttcgaaggattatttaataaattggattttgatggattttgcgggattttatagtgtaatt 37972913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #47
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 264 - 326
Target Start/End: Complemental strand, 3797191 - 3797129
Alignment:
Q  264 gtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatgg 326  Q
    |||| ||||||||||| |||||| |||||| |||||||| |||||||||| ||||||||||||    
T  3797191 gtcttgtggtattcaagatcattaaaattttgaaggattgtttaataaattagattttgatgg 3797129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #48
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 264 - 322
Target Start/End: Original strand, 47066770 - 47066828
Alignment:
Q  264 gtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttg 322  Q
    |||| ||||||||||||||||||||||||| |||||||| ||||||||||  |||||||    
T  47066770 gtcttgtggtattcaaaatcattcaaatttcgaaggattgtttaataaattggattttg 47066828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #49
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 269 - 322
Target Start/End: Complemental strand, 17001152 - 17001099
Alignment:
Q  269 gtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttg 322  Q
    ||||||||||||||||||||||||| |||||||| ||||||||||  |||||||    
T  17001152 gtggtattcaaaatcattcaaatttcgaaggattgtttaataaattggattttg 17001099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #50
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 269 - 333
Target Start/End: Complemental strand, 44256895 - 44256831
Alignment:
Q  269 gtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgt 333  Q
    ||||||||||||||||||||||||| ||| |||| ||||||||||  ||||| |||| |||||||    
T  44256895 gtggtattcaaaatcattcaaatttcgaatgattgtttaataaattggatttggatgaattttgt 44256831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #51
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 264 - 333
Target Start/End: Complemental strand, 33892384 - 33892315
Alignment:
Q  264 gtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgt 333  Q
    |||| ||||||||||||||||||||||||| ||| |||| || |||||||  |||||| ||| |||||||    
T  33892384 gtcttgtggtattcaaaatcattcaaatttcgaatgattgttaaataaattggatttttatgaattttgt 33892315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #52
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 264 - 333
Target Start/End: Original strand, 39028163 - 39028232
Alignment:
Q  264 gtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgt 333  Q
    |||| ||| ||||||||||| ||||||||  ||| |||| ||||||||||  ||||||||||||||||||    
T  39028163 gtcttgtgttattcaaaatcgttcaaattacgaaagattgtttaataaattggattttgatggattttgt 39028232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #53
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 304 - 348
Target Start/End: Original strand, 10617024 - 10617068
Alignment:
Q  304 tttaataaatcagattttgatggattttgtggaattttctagtga 348  Q
    |||||||||| ||||||||||||||||||||  ||||||||||||    
T  10617024 tttaataaattagattttgatggattttgtgagattttctagtga 10617068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #54
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 284 - 352
Target Start/End: Original strand, 41827390 - 41827458
Alignment:
Q  284 attcaaatttggaaggattatttaataaatcagattttgatggattttgtggaattttctagtgaaatt 352  Q
    ||||||| || |||||||| ||||||||||  |||||||||||||||||||| ||| | ||||| ||||    
T  41827390 attcaaaatttgaaggattgtttaataaattggattttgatggattttgtgggattgtgtagtgtaatt 41827458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #55
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 269 - 328
Target Start/End: Original strand, 447854 - 447913
Alignment:
Q  269 gtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggat 328  Q
    |||||||| |||||||||||||||| ||| |||| |||||| |||  |||||||||||||    
T  447854 gtggtatttaaaatcattcaaatttcgaatgattgtttaattaattggattttgatggat 447913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #56
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 269 - 343
Target Start/End: Complemental strand, 1470362 - 1470289
Alignment:
Q  269 gtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaattttct 343  Q
    ||||||||||||||| |||||||||  ||| ||| |||||| ||| |||||||||| | |||||||| |||||||    
T  1470362 gtggtattcaaaatcgttcaaattttaaagcattgtttaatgaattagattttgatag-ttttgtgggattttct 1470289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #57
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 324 - 352
Target Start/End: Original strand, 19810915 - 19810943
Alignment:
Q  324 tggattttgtggaattttctagtgaaatt 352  Q
    |||||||||||||||||||||||||||||    
T  19810915 tggattttgtggaattttctagtgaaatt 19810943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 78; Significance: 3e-36; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 242 - 352
Target Start/End: Complemental strand, 7016895 - 7016785
Alignment:
Q  242 gactcttaatcacttnnnnnnngtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaatttt 341  Q
    |||||||||||||||       |||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| |||||    
T  7016895 gactcttaatcacttaaaaaaagtctagtggtattcaaaatcattcaaatttcgaaggattgtttaataaatcagattttgatggattttgtgggatttt 7016796  T
Q  342 ctagtgaaatt 352  Q
    |||||||||||    
T  7016795 ctagtgaaatt 7016785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 242 - 352
Target Start/End: Original strand, 21147117 - 21147227
Alignment:
Q  242 gactcttaatcacttnnnnnnngtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaatttt 341  Q
    |||||||||||||||       |||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| |||||    
T  21147117 gactcttaatcacttaaaaaaagtctagtggtattcaaaatcattcaaatttcgaaggattgtttaataaatcagattttgatggattttgtgggatttt 21147216  T
Q  342 ctagtgaaatt 352  Q
    |||||||||||    
T  21147217 ctagtgaaatt 21147227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 264 - 352
Target Start/End: Complemental strand, 5273053 - 5272965
Alignment:
Q  264 gtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaattttctagtgaaatt 352  Q
    |||||||||||||||||||||||||||||| ||| |||| |||||||||||||||||||||||||||||||| ||||||||||||||||    
T  5273053 gtctagtggtattcaaaatcattcaaatttcgaatgattgtttaataaatcagattttgatggattttgtgggattttctagtgaaatt 5272965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 265 - 352
Target Start/End: Complemental strand, 33656174 - 33656087
Alignment:
Q  265 tctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaattttctagtgaaatt 352  Q
    |||| |||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||    
T  33656174 tctaatggtattcaaaatcattcaaatttcgaaggattgtttaataaatcagattttgatggattttgtgggattttctagtgaaatt 33656087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 242 - 352
Target Start/End: Original strand, 849197 - 849307
Alignment:
Q  242 gactcttaatcacttnnnnnnngtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaatttt 341  Q
    |||||||||||||||       ||||| |||||||||||||||||||||||| |||||||| ||||||||||||||||||||| |||||||||| |||||    
T  849197 gactcttaatcacttaaaaaaagtctaatggtattcaaaatcattcaaatttcgaaggattgtttaataaatcagattttgatagattttgtgggatttt 849296  T
Q  342 ctagtgaaatt 352  Q
    |||||||||||    
T  849297 ctagtgaaatt 849307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 264 - 352
Target Start/End: Complemental strand, 27459084 - 27458996
Alignment:
Q  264 gtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaattttctagtgaaatt 352  Q
    ||||||||||||||||||||||||| |||| |||||||| |||||||||| ||||||||||||||||||||| ||||||||||||||||    
T  27459084 gtctagtggtattcaaaatcattcagattttgaaggattgtttaataaattagattttgatggattttgtgggattttctagtgaaatt 27458996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 265 - 352
Target Start/End: Original strand, 6460865 - 6460952
Alignment:
Q  265 tctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaattttctagtgaaatt 352  Q
    ||||||||||||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||| || ||||||||||||||||    
T  6460865 tctagtggtattcaaaatcattcaaatttcgaaggtttgtttaataaatcagattttgatggattttgagggattttctagtgaaatt 6460952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 264 - 352
Target Start/End: Original strand, 139345 - 139433
Alignment:
Q  264 gtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaattttctagtgaaatt 352  Q
    |||||||||||||||||||||||||||||| |||||||| ||||||||| |||||||||||||||||||| | |||||| |||||||||    
T  139345 gtctagtggtattcaaaatcattcaaatttcgaaggattgtttaataaaccagattttgatggattttgttggattttccagtgaaatt 139433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 264 - 352
Target Start/End: Complemental strand, 32158031 - 32157943
Alignment:
Q  264 gtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaattttctagtgaaatt 352  Q
    |||||||||||||||||||||||||||||| |||||||| |||||||||| ||||||||| ||||||||||| |||||||||| |||||    
T  32158031 gtctagtggtattcaaaatcattcaaatttcgaaggattgtttaataaattagattttgacggattttgtgggattttctagtaaaatt 32157943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 264 - 352
Target Start/End: Complemental strand, 4550391 - 4550303
Alignment:
Q  264 gtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaattttctagtgaaatt 352  Q
    |||| ||||||||||||||||||||||||| |||||||| ||||||||||  |||||||||||||||||||||||||| ||||| ||||    
T  4550391 gtcttgtggtattcaaaatcattcaaatttcgaaggattgtttaataaattggattttgatggattttgtggaattttgtagtgtaatt 4550303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 264 - 346
Target Start/End: Complemental strand, 14465361 - 14465279
Alignment:
Q  264 gtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaattttctagt 346  Q
    |||| ||||||||||||||||||||||||| ||| |||| ||||||||||| |||||||||| ||||||||||||||||||||    
T  14465361 gtcttgtggtattcaaaatcattcaaatttcgaaagattgtttaataaatcggattttgatgaattttgtggaattttctagt 14465279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 264 - 352
Target Start/End: Original strand, 13926003 - 13926091
Alignment:
Q  264 gtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaattttctagtgaaatt 352  Q
    |||| ||||||||||||||||||||||||| |||||||| ||||||||||  |||||||||||||||||||| ||||| ||||| ||||    
T  13926003 gtcttgtggtattcaaaatcattcaaatttcgaaggattgtttaataaattggattttgatggattttgtgggattttgtagtgtaatt 13926091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 264 - 352
Target Start/End: Complemental strand, 14000239 - 14000151
Alignment:
Q  264 gtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaattttctagtgaaatt 352  Q
    |||| ||||||||||||||||||||||||| |||||||| ||||||||||  |||||||||||||||||||| ||||| ||||| ||||    
T  14000239 gtcttgtggtattcaaaatcattcaaattttgaaggattgtttaataaattggattttgatggattttgtgggattttgtagtgtaatt 14000151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 273 - 352
Target Start/End: Complemental strand, 7947698 - 7947619
Alignment:
Q  273 tattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaattttctagtgaaatt 352  Q
    ||||||||||||||||||||| |||||||| ||||||||||  |||||||||||||||||||||||||| ||||| ||||    
T  7947698 tattcaaaatcattcaaatttcgaaggattgtttaataaattggattttgatggattttgtggaattttgtagtgtaatt 7947619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 264 - 352
Target Start/End: Complemental strand, 1152237 - 1152149
Alignment:
Q  264 gtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaattttctagtgaaatt 352  Q
    |||| ||||||||||||||||||||||||| || ||||| ||||||||||  |||||||||||||||||||| ||||| ||||| ||||    
T  1152237 gtcttgtggtattcaaaatcattcaaatttcgagggattgtttaataaattggattttgatggattttgtgggattttgtagtgtaatt 1152149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 264 - 333
Target Start/End: Complemental strand, 4240586 - 4240517
Alignment:
Q  264 gtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgt 333  Q
    |||| ||||||||||||||||||||||||| |||||||| ||||||||||  ||||||||||||||||||    
T  4240586 gtcttgtggtattcaaaatcattcaaatttcgaaggattgtttaataaattggattttgatggattttgt 4240517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 269 - 333
Target Start/End: Original strand, 5949185 - 5949249
Alignment:
Q  269 gtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgt 333  Q
    ||||||||||||||||||||||||| |||||||| ||||||||||  ||||||||||||||||||    
T  5949185 gtggtattcaaaatcattcaaatttcgaaggattgtttaataaattggattttgatggattttgt 5949249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 264 - 352
Target Start/End: Original strand, 39852417 - 39852505
Alignment:
Q  264 gtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaattttctagtgaaatt 352  Q
    |||| ||||||||||||||||||||||||| |||||||| |||| |||||  |||||||||||||||| ||| ||||| ||||| ||||    
T  39852417 gtcttgtggtattcaaaatcattcaaatttcgaaggattgtttactaaattggattttgatggattttatgggattttgtagtgtaatt 39852505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 273 - 333
Target Start/End: Complemental strand, 1461263 - 1461203
Alignment:
Q  273 tattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgt 333  Q
    ||||||||||||||||||||| |||||||| ||||||||||  ||||||||||||||||||    
T  1461263 tattcaaaatcattcaaatttcgaaggattgtttaataaattggattttgatggattttgt 1461203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 264 - 335
Target Start/End: Original strand, 22746369 - 22746440
Alignment:
Q  264 gtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtgg 335  Q
    |||| ||| ||||||||||||||||||||| ||| |||| ||||||||||   |||||||||||||||||||    
T  22746369 gtcttgtgatattcaaaatcattcaaatttcgaatgattgtttaataaattgaattttgatggattttgtgg 22746440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 273 - 333
Target Start/End: Complemental strand, 40013827 - 40013767
Alignment:
Q  273 tattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgt 333  Q
    ||||||||||||||||||||| |||||||| |||||| |||  |||||| |||||||||||    
T  40013827 tattcaaaatcattcaaatttcgaaggattgtttaatcaattggattttaatggattttgt 40013767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 264 - 352
Target Start/End: Original strand, 9689730 - 9689817
Alignment:
Q  264 gtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaattttctagtgaaatt 352  Q
    |||| |||||||| ||||||||| |||||| ||| |||| ||| |||||| ||||||||||||||| ||||  ||||||| || |||||    
T  9689730 gtcttgtggtatttaaaatcatt-aaatttcgaatgattgtttgataaattagattttgatggattgtgtgagattttcttgtaaaatt 9689817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 271 - 322
Target Start/End: Original strand, 37013993 - 37014044
Alignment:
Q  271 ggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttg 322  Q
    ||||||||||||||||||||||| ||||| || ||||||||||  |||||||    
T  37013993 ggtattcaaaatcattcaaatttcgaagggttgtttaataaattggattttg 37014044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 78; Significance: 3e-36; HSPs: 57)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 242 - 352
Target Start/End: Original strand, 28541747 - 28541857
Alignment:
Q  242 gactcttaatcacttnnnnnnngtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaatttt 341  Q
    |||||||||||||||       |||||||||||||||||||||||||||||| ||| |||| ||||||||||||||||||||||||||||||||||||||    
T  28541747 gactcttaatcacttaaaaaaagtctagtggtattcaaaatcattcaaatttcgaatgattgtttaataaatcagattttgatggattttgtggaatttt 28541846  T
Q  342 ctagtgaaatt 352  Q
    |||||||||||    
T  28541847 ctagtgaaatt 28541857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 264 - 352
Target Start/End: Complemental strand, 7249900 - 7249812
Alignment:
Q  264 gtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaattttctagtgaaatt 352  Q
    |||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||    
T  7249900 gtctagtggtattcaaaatcattcaaatttcgaaggattgtttaataaatcagattttgatggattttgtgggattttctagtgaaatt 7249812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 264 - 352
Target Start/End: Original strand, 42786755 - 42786843
Alignment:
Q  264 gtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaattttctagtgaaatt 352  Q
    |||||||||||||||||||||||||||||| |||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||    
T  42786755 gtctagtggtattcaaaatcattcaaatttcgaaggattgtttaataaatcatattttgatggattttgtggaattttctagtgaaatt 42786843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 242 - 352
Target Start/End: Original strand, 7007423 - 7007533
Alignment:
Q  242 gactcttaatcacttnnnnnnngtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaatttt 341  Q
    |||||||||||||||       |||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| ||||||||| |||||    
T  7007423 gactcttaatcacttaaaaaaagtctagtggtattcaaaatcattcaaatttcgaaggattgtttaataaatcagattttgatgaattttgtgggatttt 7007522  T
Q  342 ctagtgaaatt 352  Q
    |||||||||||    
T  7007523 ctagtgaaatt 7007533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 267 - 352
Target Start/End: Complemental strand, 27454210 - 27454125
Alignment:
Q  267 tagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaattttctagtgaaatt 352  Q
    ||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  27454210 tagtggtattcaaaatcattcaaattttgaaagattatttaataaatcagattttgatgaattttgtggaattttctagtgaaatt 27454125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 242 - 352
Target Start/End: Complemental strand, 32950993 - 32950883
Alignment:
Q  242 gactcttaatcacttnnnnnnngtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaatttt 341  Q
    |||||||||||||||       |||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| ||||||||| |||||    
T  32950993 gactcttaatcacttaaaaaaagtctagtggtattcaaaatcattcaaatttcgaaggattgtttaataaatcagattttgatgaattttgtgggatttt 32950894  T
Q  342 ctagtgaaatt 352  Q
    |||||||||||    
T  32950893 ctagtgaaatt 32950883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 267 - 352
Target Start/End: Complemental strand, 41881214 - 41881129
Alignment:
Q  267 tagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaattttctagtgaaatt 352  Q
    ||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||    
T  41881214 tagtggtattcaaaatcattcaaatttcgaaggattgtttaataaatcagattttgatggattttgtgggattttctagtgaaatt 41881129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 242 - 352
Target Start/End: Original strand, 55302892 - 55303002
Alignment:
Q  242 gactcttaatcacttnnnnnnngtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaatttt 341  Q
    |||||||||||||||       |||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| |||||| |||||    
T  55302892 gactcttaatcacttaaaaaaagtctagtggtattcaaaatcattcaaatttcgaaggattgtttaataaatcagattttgatggatattgtgggatttt 55302991  T
Q  342 ctagtgaaatt 352  Q
    |||||||||||    
T  55302992 ctagtgaaatt 55303002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 264 - 352
Target Start/End: Original strand, 12113016 - 12113104
Alignment:
Q  264 gtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaattttctagtgaaatt 352  Q
    ||||| |||||||||||||||||||||||| |||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||    
T  12113016 gtctaatggtattcaaaatcattcaaatttcgaaggattgtttaataaatcagattttaatggattttgtggaattttctagtgaaatt 12113104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 264 - 352
Target Start/End: Original strand, 41320881 - 41320969
Alignment:
Q  264 gtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaattttctagtgaaatt 352  Q
    |||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| || |||||||||||||    
T  41320881 gtctagtggtattcaaaatcattcaaatttcgaaggattgtttaataaatcagattttgatggattttgtgggatgttctagtgaaatt 41320969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 264 - 350
Target Start/End: Complemental strand, 37046586 - 37046500
Alignment:
Q  264 gtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaattttctagtgaaa 350  Q
    |||||||| |||| |||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  37046586 gtctagtgatatttaaaatcattcaaatttcgaaggattgtttaataaatcagattttgatggattttgtggaattttctagtgaaa 37046500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 242 - 352
Target Start/End: Original strand, 1044856 - 1044966
Alignment:
Q  242 gactcttaatcacttnnnnnnngtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaatttt 341  Q
    |||||||||||||||       |||||||||||||||||| ||||||| ||| |||||||| |||||||||||||||||||||||||||||||| |||||    
T  1044856 gactcttaatcacttaaaaaaagtctagtggtattcaaaaccattcaactttcgaaggattgtttaataaatcagattttgatggattttgtgggatttt 1044955  T
Q  342 ctagtgaaatt 352  Q
    |||||||||||    
T  1044956 ctagtgaaatt 1044966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 242 - 352
Target Start/End: Original strand, 25331180 - 25331290
Alignment:
Q  242 gactcttaatcacttnnnnnnngtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaatttt 341  Q
    |||||||||||||||       |||||||| |||||||||||||||||||||  ||||||| |||||||||||||||||||||||||||||||| |||||    
T  25331180 gactcttaatcacttaaaaaaagtctagtgatattcaaaatcattcaaatttcaaaggattgtttaataaatcagattttgatggattttgtgggatttt 25331279  T
Q  342 ctagtgaaatt 352  Q
    |||||||||||    
T  25331280 ctagtgaaatt 25331290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 242 - 352
Target Start/End: Original strand, 25446099 - 25446209
Alignment:
Q  242 gactcttaatcacttnnnnnnngtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaatttt 341  Q
    |||||||||||||||       |||||||||||||||||||||||||||||| ||| |||| |||||||||||||||||||||||||||||||| |||||    
T  25446099 gactcttaatcacttaaaaaaagtctagtggtattcaaaatcattcaaatttcgaatgattgtttaataaatcagattttgatggattttgtgggatttt 25446198  T
Q  342 ctagtgaaatt 352  Q
     ||||||||||    
T  25446199 ttagtgaaatt 25446209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 269 - 352
Target Start/End: Complemental strand, 39479485 - 39479402
Alignment:
Q  269 gtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaattttctagtgaaatt 352  Q
    ||||||||||||||||||||||||| |||| ||| |||||||||||||||||||||||||||||||| ||||||||||||||||    
T  39479485 gtggtattcaaaatcattcaaatttcgaagaattgtttaataaatcagattttgatggattttgtgggattttctagtgaaatt 39479402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 242 - 352
Target Start/End: Original strand, 23465004 - 23465114
Alignment:
Q  242 gactcttaatcacttnnnnnnngtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaatttt 341  Q
    |||||||||||||||       |||||||||||||||||| ||||||||||| |||||||| |||||||||||||| ||||||||||||||||| |||||    
T  23465004 gactcttaatcacttaaaataagtctagtggtattcaaaaccattcaaatttcgaaggattgtttaataaatcagaatttgatggattttgtgggatttt 23465103  T
Q  342 ctagtgaaatt 352  Q
    ||||| |||||    
T  23465104 ctagttaaatt 23465114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 264 - 352
Target Start/End: Original strand, 9163147 - 9163235
Alignment:
Q  264 gtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaattttctagtgaaatt 352  Q
    |||| ||| ||||||||||||||||||||| |||||||| |||||||||| | ||||||||||||||||||||||||||||||||||||    
T  9163147 gtcttgtgatattcaaaatcattcaaatttcgaaggattgtttaataaattaaattttgatggattttgtggaattttctagtgaaatt 9163235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 264 - 352
Target Start/End: Complemental strand, 19741043 - 19740955
Alignment:
Q  264 gtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaattttctagtgaaatt 352  Q
    |||| |||||||| |||||||||||||||| |||||||| |||||||||| ||||||||||||||||||||| ||||||||||||||||    
T  19741043 gtcttgtggtattaaaaatcattcaaatttcgaaggattgtttaataaattagattttgatggattttgtgggattttctagtgaaatt 19740955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 264 - 352
Target Start/End: Complemental strand, 34228718 - 34228630
Alignment:
Q  264 gtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaattttctagtgaaatt 352  Q
    ||||||||||||||||||||||| |||||| ||| |||| |||||||||||||||||||||||||||||| | ||||||||||||||||    
T  34228718 gtctagtggtattcaaaatcattgaaatttcgaatgattgtttaataaatcagattttgatggattttgtaggattttctagtgaaatt 34228630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 265 - 352
Target Start/End: Original strand, 3436665 - 3436752
Alignment:
Q  265 tctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaattttctagtgaaatt 352  Q
    |||| |||||||||||||||||||||||| |||||||| |||||||||||||||||||||| ||||||||| ||||| ||||||||||    
T  3436665 tctaatggtattcaaaatcattcaaatttcgaaggattgtttaataaatcagattttgatgaattttgtgggattttgtagtgaaatt 3436752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 242 - 352
Target Start/End: Original strand, 1112942 - 1113052
Alignment:
Q  242 gactcttaatcacttnnnnnnngtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaatttt 341  Q
    |||||||||||||||       ||||||||||||||||||||||||||||||  || |||| |||||||||||||||||||||||||||||||| ||||     
T  1112942 gactcttaatcacttaaaaaaagtctagtggtattcaaaatcattcaaatttcaaatgattgtttaataaatcagattttgatggattttgtgggatttc 1113041  T
Q  342 ctagtgaaatt 352  Q
    ||||| |||||    
T  1113042 ctagtaaaatt 1113052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 242 - 352
Target Start/End: Complemental strand, 30009834 - 30009724
Alignment:
Q  242 gactcttaatcacttnnnnnnngtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaatttt 341  Q
    |||||||||||||||       ||||||||||||||||||||||| ||||||  || |||| |||||||||||||||||||||||||||||||| |||||    
T  30009834 gactcttaatcacttaaaaaaagtctagtggtattcaaaatcatttaaattttaaatgattgtttaataaatcagattttgatggattttgtgggatttt 30009735  T
Q  342 ctagtgaaatt 352  Q
    ||||| |||||    
T  30009734 ctagtaaaatt 30009724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 242 - 342
Target Start/End: Complemental strand, 25504796 - 25504696
Alignment:
Q  242 gactcttaatcacttnnnnnnngtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaatttt 341  Q
    |||||||||||||||       ||| |||| ||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| |||||    
T  25504796 gactcttaatcacttaaaaaaagtccagtgatattcaaaatcattcaaatttcgaaggattgtttaataaatcagattttgatggattttgtgggatttt 25504697  T
Q  342 c 342  Q
    |    
T  25504696 c 25504696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 270 - 352
Target Start/End: Complemental strand, 44770982 - 44770900
Alignment:
Q  270 tggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaattttctagtgaaatt 352  Q
    |||||||||||||||||||||||| |||||||| ||||||||||  ||||||| |||||||||||| ||||||||||||||||    
T  44770982 tggtattcaaaatcattcaaattttgaaggattgtttaataaattggattttggtggattttgtgggattttctagtgaaatt 44770900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 242 - 352
Target Start/End: Original strand, 22202064 - 22202174
Alignment:
Q  242 gactcttaatcacttnnnnnnngtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaatttt 341  Q
    |||||||||||||||       ||||||||||||||||||||||| ||||||  || |||| |||||||||| | ||||||||||||||||||| |||||    
T  22202064 gactcttaatcacttaaaaaaagtctagtggtattcaaaatcattaaaatttcaaaagattgtttaataaataaaattttgatggattttgtgggatttt 22202163  T
Q  342 ctagtgaaatt 352  Q
    |||||||||||    
T  22202164 ctagtgaaatt 22202174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 264 - 352
Target Start/End: Original strand, 5441475 - 5441563
Alignment:
Q  264 gtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaattttctagtgaaatt 352  Q
    |||| ||||||||||||||||||||||||| |||||||| ||||||||||  |||||||||||||||||||| ||||| ||||| ||||    
T  5441475 gtcttgtggtattcaaaatcattcaaatttcgaaggattgtttaataaattggattttgatggattttgtgggattttgtagtgtaatt 5441563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 264 - 352
Target Start/End: Original strand, 27768127 - 27768215
Alignment:
Q  264 gtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaattttctagtgaaatt 352  Q
    |||| ||||||||||||||||||||||||| |||||||| ||||||||||  |||||||||||||||||||| ||||| ||||| ||||    
T  27768127 gtcttgtggtattcaaaatcattcaaatttcgaaggattgtttaataaattggattttgatggattttgtgggattttgtagtgtaatt 27768215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 264 - 352
Target Start/End: Complemental strand, 37828537 - 37828449
Alignment:
Q  264 gtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaattttctagtgaaatt 352  Q
    |||| ||||||||||||||||||||||||| |||||||| ||||||||||  |||||||||||||||||||| ||||| ||||| ||||    
T  37828537 gtcttgtggtattcaaaatcattcaaatttcgaaggattgtttaataaattggattttgatggattttgtgggattttgtagtgtaatt 37828449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 264 - 352
Target Start/End: Original strand, 48261198 - 48261286
Alignment:
Q  264 gtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaattttctagtgaaatt 352  Q
    |||| ||||||||||||||||||||||||| |||||||| ||||||||||  |||||||||||||||||||| ||||| ||||| ||||    
T  48261198 gtcttgtggtattcaaaatcattcaaattttgaaggattgtttaataaattggattttgatggattttgtgggattttgtagtgtaatt 48261286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 264 - 352
Target Start/End: Original strand, 51320992 - 51321080
Alignment:
Q  264 gtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaattttctagtgaaatt 352  Q
    |||| ||||||||||||||||||||||||| |||||||| ||||||||||  ||||||||||||||||||| |||||| ||||| ||||    
T  51320992 gtcttgtggtattcaaaatcattcaaatttcgaaggattgtttaataaattggattttgatggattttgtgtaattttatagtgtaatt 51321080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 264 - 352
Target Start/End: Original strand, 54341215 - 54341303
Alignment:
Q  264 gtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaattttctagtgaaatt 352  Q
    |||| ||||||||||||||||||||||||| |||||||| ||||||||||  |||||||||||||||||||| ||||| ||||| ||||    
T  54341215 gtcttgtggtattcaaaatcattcaaatttcgaaggattgtttaataaattggattttgatggattttgtgggattttgtagtgtaatt 54341303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 264 - 347
Target Start/End: Original strand, 37915898 - 37915981
Alignment:
Q  264 gtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaattttctagtg 347  Q
    |||| ||||||||||||||||||||||||| |||||||| ||||||||||  |||||||||||||||||||| ||||| |||||    
T  37915898 gtcttgtggtattcaaaatcattcaaatttcgaaggattgtttaataaattggattttgatggattttgtgggattttgtagtg 37915981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 264 - 333
Target Start/End: Original strand, 23987285 - 23987354
Alignment:
Q  264 gtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgt 333  Q
    |||| ||||||||||||||||||||||||| |||||||| |||||||||| |||||||||||||||||||    
T  23987285 gtcttgtggtattcaaaatcattcaaatttcgaaggattgtttaataaattagattttgatggattttgt 23987354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 284 - 352
Target Start/End: Complemental strand, 24131097 - 24131029
Alignment:
Q  284 attcaaatttggaaggattatttaataaatcagattttgatggattttgtggaattttctagtgaaatt 352  Q
    |||||||||| ||| |||| |||||||||||||||||||||||||||||||| ||||||||||||||||    
T  24131097 attcaaatttcgaatgattgtttaataaatcagattttgatggattttgtgggattttctagtgaaatt 24131029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 242 - 331
Target Start/End: Complemental strand, 31314889 - 31314800
Alignment:
Q  242 gactcttaatcacttnnnnnnngtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggatttt 331  Q
    |||||||||||||||       |||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||  |||||||    
T  31314889 gactcttaatcacttaaaaaaagtctagtggtattcaaaatcattcaaatttcgaaggattgtttaataaatcagattttgtgggatttt 31314800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 264 - 352
Target Start/End: Original strand, 32322162 - 32322250
Alignment:
Q  264 gtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaattttctagtgaaatt 352  Q
    |||| ||||||||||||||||||||||||| |||||||| ||||||||||   ||||||||||||||||||| ||||| ||||| ||||    
T  32322162 gtcttgtggtattcaaaatcattcaaatttcgaaggattgtttaataaattgaattttgatggattttgtgggattttgtagtgtaatt 32322250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 264 - 344
Target Start/End: Original strand, 53275910 - 53275990
Alignment:
Q  264 gtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaattttcta 344  Q
    |||||||| |||| |||||||||||||||| |||||||| | |||||||||||||||||||||||||||||  ||||||||    
T  53275910 gtctagtgatatttaaaatcattcaaatttcgaaggattgtgtaataaatcagattttgatggattttgtgagattttcta 53275990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 264 - 352
Target Start/End: Complemental strand, 54853603 - 54853515
Alignment:
Q  264 gtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaattttctagtgaaatt 352  Q
    |||| |||||||||||||| ||||||||||  ||||||| ||||||||||  |||||||||||||||||||| ||||| ||||| ||||    
T  54853603 gtcttgtggtattcaaaattattcaaatttcaaaggattgtttaataaattggattttgatggattttgtgggattttgtagtgtaatt 54853515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 264 - 335
Target Start/End: Complemental strand, 29649802 - 29649731
Alignment:
Q  264 gtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtgg 335  Q
    |||| ||||||||||||||||||||||||| ||| |||| ||||||||||  ||||||||||||||||||||    
T  29649802 gtcttgtggtattcaaaatcattcaaatttcgaaagattgtttaataaattggattttgatggattttgtgg 29649731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 264 - 331
Target Start/End: Complemental strand, 36479366 - 36479299
Alignment:
Q  264 gtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggatttt 331  Q
    |||| |||||||||||||| |||||||||| |||||||||||||||||||  ||||||||||||||||    
T  36479366 gtctcgtggtattcaaaattattcaaatttcgaaggattatttaataaattggattttgatggatttt 36479299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 270 - 352
Target Start/End: Original strand, 28371001 - 28371083
Alignment:
Q  270 tggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaattttctagtgaaatt 352  Q
    ||||||||||||||||||||||||  ||||||| ||||||||||   |||||| || ||||||||| ||||||||||||||||    
T  28371001 tggtattcaaaatcattcaaattttaaaggattgtttaataaattgaattttggtgaattttgtgggattttctagtgaaatt 28371083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 269 - 335
Target Start/End: Complemental strand, 40537280 - 40537214
Alignment:
Q  269 gtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtgg 335  Q
    |||||||||||||||||| |||||| ||| |||| ||||||||||| ||||||||||||||||||||    
T  40537280 gtggtattcaaaatcatttaaatttcgaatgattgtttaataaatctgattttgatggattttgtgg 40537214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 264 - 333
Target Start/End: Original strand, 28483970 - 28484039
Alignment:
Q  264 gtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgt 333  Q
    |||| ||||||||||||||||||||||||| |||||||||||||||||||  |||||||  |||||||||    
T  28483970 gtctcgtggtattcaaaatcattcaaatttcgaaggattatttaataaattggattttgtaggattttgt 28484039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 264 - 352
Target Start/End: Complemental strand, 39307388 - 39307300
Alignment:
Q  264 gtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaattttctagtgaaatt 352  Q
    |||| |||||||||| ||||||||||||||  || ||||||||||| |||    |||||||| ||||||||| ||||||||||||||||    
T  39307388 gtcttgtggtattcataatcattcaaatttctaaagattatttaatgaattgagttttgatgaattttgtgggattttctagtgaaatt 39307300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 264 - 322
Target Start/End: Complemental strand, 32684123 - 32684065
Alignment:
Q  264 gtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttg 322  Q
    |||| ||||||||||||||||||||||||| |||||||| ||||||||||  |||||||    
T  32684123 gtcttgtggtattcaaaatcattcaaatttcgaaggattgtttaataaattggattttg 32684065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 267 - 352
Target Start/End: Complemental strand, 46635774 - 46635695
Alignment:
Q  267 tagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaattttctagtgaaatt 352  Q
    |||| |||||||||||||||||||||| |||||||| |||||||||| |||||      |||||||||| ||||| ||||||||||    
T  46635774 tagtagtattcaaaatcattcaaatttcgaaggattgtttaataaataagatt------gattttgtgggattttttagtgaaatt 46635695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 264 - 322
Target Start/End: Complemental strand, 49834948 - 49834890
Alignment:
Q  264 gtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttg 322  Q
    |||| ||||||||||||||||||||||||| |||||||| ||||||||||  |||||||    
T  49834948 gtcttgtggtattcaaaatcattcaaatttcgaaggattgtttaataaattggattttg 49834890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #48
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 270 - 331
Target Start/End: Original strand, 12913301 - 12913362
Alignment:
Q  270 tggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggatttt 331  Q
    |||||||||||||||||||||||| |||||||| ||||||||||  |||||||  |||||||    
T  12913301 tggtattcaaaatcattcaaattttgaaggattgtttaataaattggattttgtgggatttt 12913362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #49
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 264 - 333
Target Start/End: Complemental strand, 30967434 - 30967365
Alignment:
Q  264 gtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgt 333  Q
    |||| |||||||||||||||||||||||||  ||||||| ||||||||||  |||||||  |||||||||    
T  30967434 gtcttgtggtattcaaaatcattcaaatttcaaaggattgtttaataaattggattttgtgggattttgt 30967365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #50
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 264 - 333
Target Start/End: Original strand, 50018322 - 50018391
Alignment:
Q  264 gtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgt 333  Q
    |||| ||||||||||| ||||||||||||| |||||||| ||||||||||   ||||| |||||||||||    
T  50018322 gtcttgtggtattcaagatcattcaaattttgaaggattgtttaataaattgaattttaatggattttgt 50018391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #51
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 264 - 322
Target Start/End: Original strand, 5800049 - 5800107
Alignment:
Q  264 gtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttg 322  Q
    |||| |||||||||||||||||||||||||  ||||||| ||||||||||  |||||||    
T  5800049 gtcttgtggtattcaaaatcattcaaatttcaaaggattgtttaataaattggattttg 5800107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #52
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 264 - 352
Target Start/End: Original strand, 41725196 - 41725281
Alignment:
Q  264 gtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaattttctagtgaaatt 352  Q
    |||| ||| ||||||||||||||||||||| |||||||| ||   |||||  |||||||||| ||||||||| ||||| ||||| ||||    
T  41725196 gtcttgtgatattcaaaatcattcaaattttgaaggattgtt---taaattggattttgatgaattttgtgggattttatagtgtaatt 41725281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #53
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 270 - 331
Target Start/End: Complemental strand, 56445474 - 56445413
Alignment:
Q  270 tggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggatttt 331  Q
    |||||||||||||||||||||||| ||| |||| ||||||||||  |||||||  |||||||    
T  56445474 tggtattcaaaatcattcaaatttcgaatgattgtttaataaattggattttgtgggatttt 56445413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #54
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 305 - 352
Target Start/End: Original strand, 8711978 - 8712025
Alignment:
Q  305 ttaataaatcagattttgatggattttgtggaattttctagtgaaatt 352  Q
    |||||||||  |||||||||||||||||||| ||||| ||||||||||    
T  8711978 ttaataaattggattttgatggattttgtgggattttatagtgaaatt 8712025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #55
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 305 - 352
Target Start/End: Original strand, 24736447 - 24736494
Alignment:
Q  305 ttaataaatcagattttgatggattttgtggaattttctagtgaaatt 352  Q
    |||||||||  |||||||||||||||||||  ||||||||||||||||    
T  24736447 ttaataaattggattttgatggattttgtgagattttctagtgaaatt 24736494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #56
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 264 - 322
Target Start/End: Complemental strand, 49501646 - 49501588
Alignment:
Q  264 gtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttg 322  Q
    |||| |||| |||||||||||||||||||| ||| |||| ||||||||||  |||||||    
T  49501646 gtcttgtggcattcaaaatcattcaaatttcgaatgattgtttaataaattggattttg 49501588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #57
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 264 - 322
Target Start/End: Complemental strand, 49507711 - 49507653
Alignment:
Q  264 gtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttg 322  Q
    |||| |||| |||||||||||||||||||| ||| |||| ||||||||||  |||||||    
T  49507711 gtcttgtggcattcaaaatcattcaaatttcgaatgattgtttaataaattggattttg 49507653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 77; Significance: 1e-35; HSPs: 41)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 264 - 352
Target Start/End: Complemental strand, 6304387 - 6304299
Alignment:
Q  264 gtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaattttctagtgaaatt 352  Q
    |||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||    
T  6304387 gtctagtggtattcaaaatcattcaaatttcgaaggattgtttaataaatcagattttgatggattttgtgggattttctagtgaaatt 6304299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 264 - 352
Target Start/End: Complemental strand, 50192685 - 50192597
Alignment:
Q  264 gtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaattttctagtgaaatt 352  Q
    |||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||    
T  50192685 gtctagtggtattcaaaatcattcaaattttgaaggattgtttaataaatcagattttgatggattttgtgggattttctagtgaaatt 50192597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 242 - 352
Target Start/End: Complemental strand, 19451965 - 19451855
Alignment:
Q  242 gactcttaatcacttnnnnnnngtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaatttt 341  Q
    |||||||||||||||       |||||||||||||||||||||||||||||| |||||||  |||||||||||||||||||||||||||||||| |||||    
T  19451965 gactcttaatcacttaaaaaaagtctagtggtattcaaaatcattcaaatttcgaaggatcgtttaataaatcagattttgatggattttgtgggatttt 19451866  T
Q  342 ctagtgaaatt 352  Q
    |||||||||||    
T  19451865 ctagtgaaatt 19451855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 242 - 352
Target Start/End: Complemental strand, 45760166 - 45760056
Alignment:
Q  242 gactcttaatcacttnnnnnnngtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaatttt 341  Q
    |||||||||||||||       ||||||||||||||||||||||||||| || |||||||| |||||||||||||||||||||||||||||||| |||||    
T  45760166 gactcttaatcacttaaaaaaagtctagtggtattcaaaatcattcaaacttcgaaggattgtttaataaatcagattttgatggattttgtgggatttt 45760067  T
Q  342 ctagtgaaatt 352  Q
    |||||||||||    
T  45760066 ctagtgaaatt 45760056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 264 - 352
Target Start/End: Original strand, 35279737 - 35279825
Alignment:
Q  264 gtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaattttctagtgaaatt 352  Q
    ||||||||||||||||||||||| |||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||    
T  35279737 gtctagtggtattcaaaatcatttaaatttcgaaggattgtttaataaatcagattttgatggattttgtgggattttctagtgaaatt 35279825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 264 - 352
Target Start/End: Original strand, 45536009 - 45536097
Alignment:
Q  264 gtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaattttctagtgaaatt 352  Q
    |||||||||||||||||||||||||||||| ||| |||| |||||||||||||||||||||||||||||||| ||||||||||||||||    
T  45536009 gtctagtggtattcaaaatcattcaaatttcgaaagattgtttaataaatcagattttgatggattttgtgggattttctagtgaaatt 45536097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 264 - 352
Target Start/End: Complemental strand, 47654486 - 47654398
Alignment:
Q  264 gtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaattttctagtgaaatt 352  Q
    ||||||||||||||||||| |||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||    
T  47654486 gtctagtggtattcaaaattattcaaatttcgaaggattgtttaataaatcagattttgatggattttgtggaattttctagggaaatt 47654398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 268 - 352
Target Start/End: Complemental strand, 49198400 - 49198316
Alignment:
Q  268 agtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaattttctagtgaaatt 352  Q
    |||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||    
T  49198400 agtggtattcaaaatcattcaaatttcgaaggattgtttaataaatcagattttgatggattttgtgggattttctagtgaaatt 49198316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 242 - 352
Target Start/End: Original strand, 49418127 - 49418237
Alignment:
Q  242 gactcttaatcacttnnnnnnngtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaatttt 341  Q
    |||||||||||||||       ||||||||||||||||||||||||||||||  ||||||| |||||||||||||||||||||||||||||||| |||||    
T  49418127 gactcttaatcacttaaaaaaagtctagtggtattcaaaatcattcaaatttcaaaggattgtttaataaatcagattttgatggattttgtgggatttt 49418226  T
Q  342 ctagtgaaatt 352  Q
    ||| |||||||    
T  49418227 ctattgaaatt 49418237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 242 - 352
Target Start/End: Original strand, 21222190 - 21222300
Alignment:
Q  242 gactcttaatcacttnnnnnnngtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaatttt 341  Q
    |||||||||||||||       |||||| ||||||||||||||||||||||| |||||||| |||||||||| ||||||||||||||||||||| |||||    
T  21222190 gactcttaatcacttaaaaaaagtctagaggtattcaaaatcattcaaatttcgaaggattgtttaataaataagattttgatggattttgtgggatttt 21222289  T
Q  342 ctagtgaaatt 352  Q
     ||||||||||    
T  21222290 ttagtgaaatt 21222300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 242 - 352
Target Start/End: Original strand, 47780754 - 47780864
Alignment:
Q  242 gactcttaatcacttnnnnnnngtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaatttt 341  Q
    |||||||||||||||       |||||||| |||||||||||||||||| ||  ||||||| |||||||||||||||||||||||||||||||| |||||    
T  47780754 gactcttaatcacttaaaaaaagtctagtgatattcaaaatcattcaaaattaaaaggattgtttaataaatcagattttgatggattttgtgggatttt 47780853  T
Q  342 ctagtgaaatt 352  Q
    |||||||||||    
T  47780854 ctagtgaaatt 47780864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 264 - 352
Target Start/End: Original strand, 730214 - 730302
Alignment:
Q  264 gtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaattttctagtgaaatt 352  Q
    |||||||||||||||||||||||||||||| || | ||| |||||||||||||||||||||||||||||||  ||||||||||||||||    
T  730214 gtctagtggtattcaaaatcattcaaatttcgacgaattgtttaataaatcagattttgatggattttgtgagattttctagtgaaatt 730302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 264 - 352
Target Start/End: Complemental strand, 32589088 - 32589000
Alignment:
Q  264 gtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaattttctagtgaaatt 352  Q
    |||| ||||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||||||||||  ||||||||||||||||    
T  32589088 gtcttgtggtattcaaaatcattcaaattttgaaggattgtttaataaatcggattttgatggattttgtgagattttctagtgaaatt 32589000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 269 - 352
Target Start/End: Complemental strand, 31572327 - 31572244
Alignment:
Q  269 gtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaattttctagtgaaatt 352  Q
    |||||||||||||||||| |||||| |||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||    
T  31572327 gtggtattcaaaatcatttaaatttcgaaggattgtttaataaatcagattttgatggattttgtgggattttatagtgaaatt 31572244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 269 - 352
Target Start/End: Complemental strand, 35679258 - 35679175
Alignment:
Q  269 gtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaattttctagtgaaatt 352  Q
    ||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||  ||| ||||||||||||||||    
T  35679258 gtggtattcaaaatcattcaaatttcgaaggattgtttaataaatcagattttgatggatttgatgggattttctagtgaaatt 35679175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 242 - 352
Target Start/End: Complemental strand, 28824529 - 28824420
Alignment:
Q  242 gactcttaatcacttnnnnnnngtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaatttt 341  Q
    |||||||||||||||       |||| ||||||||||||||||||||||||| |||| ||| |||||||||||||||||||||||||||||||| |||||    
T  28824529 gactcttaatcacttaaaaacagtcttgtggtattcaaaatcattcaaatttcgaag-attgtttaataaatcagattttgatggattttgtgggatttt 28824431  T
Q  342 ctagtgaaatt 352  Q
    |||| ||||||    
T  28824430 ctagggaaatt 28824420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 264 - 352
Target Start/End: Original strand, 48524384 - 48524472
Alignment:
Q  264 gtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaattttctagtgaaatt 352  Q
    |||| ||| ||||||||||||||||||||| ||| |||| ||||||||||||| |||||||||||||||||| ||||||||||||||||    
T  48524384 gtcttgtgatattcaaaatcattcaaattttgaaagattgtttaataaatcagtttttgatggattttgtgggattttctagtgaaatt 48524472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 264 - 352
Target Start/End: Original strand, 6312639 - 6312727
Alignment:
Q  264 gtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaattttctagtgaaatt 352  Q
    |||| ||||||||||||||||||||||||| |||||||| ||||||||||  |||||||||||||||||||| ||||| ||||| ||||    
T  6312639 gtcttgtggtattcaaaatcattcaaatttcgaaggattgtttaataaattggattttgatggattttgtgggattttgtagtgtaatt 6312727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 264 - 352
Target Start/End: Complemental strand, 9577567 - 9577479
Alignment:
Q  264 gtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaattttctagtgaaatt 352  Q
    |||| ||| ||||||||||||||||||||| |||||||| ||||||||||  |||||||||||||||||||  ||||||||||||||||    
T  9577567 gtcttgtgatattcaaaatcattcaaatttagaaggattgtttaataaattggattttgatggattttgtgagattttctagtgaaatt 9577479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 264 - 352
Target Start/End: Complemental strand, 29396523 - 29396435
Alignment:
Q  264 gtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaattttctagtgaaatt 352  Q
    |||| ||||||||||||||||||||||||| |||||||| ||||||||||  |||||||||||||||||||| ||||| ||||| ||||    
T  29396523 gtcttgtggtattcaaaatcattcaaatttcgaaggattgtttaataaattggattttgatggattttgtgggattttgtagtgtaatt 29396435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 264 - 352
Target Start/End: Original strand, 51085860 - 51085948
Alignment:
Q  264 gtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaattttctagtgaaatt 352  Q
    |||| |||||||||||||| |||||||||| ||||||||||| |||||||  |||||||||| ||||||||||||||||| ||||||||    
T  51085860 gtctcgtggtattcaaaataattcaaattttgaaggattattaaataaattggattttgatgaattttgtggaattttcttgtgaaatt 51085948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 264 - 352
Target Start/End: Original strand, 51701645 - 51701733
Alignment:
Q  264 gtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaattttctagtgaaatt 352  Q
    |||| ||||||||||||||||||||||||| |||||||| ||||||||||  |||||||||||||||||||| ||||| ||||| ||||    
T  51701645 gtcttgtggtattcaaaatcattcaaatttcgaaggattgtttaataaattggattttgatggattttgtgggattttgtagtgtaatt 51701733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 265 - 352
Target Start/End: Original strand, 29556170 - 29556257
Alignment:
Q  265 tctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaattttctagtgaaatt 352  Q
    ||||||| ||||||||||||||||||||| ||| |||| |||||||||| ||||||||||||||||| ||| |||||||| |||||||    
T  29556170 tctagtgttattcaaaatcattcaaatttcgaaagattgtttaataaattagattttgatggattttatgggattttctaatgaaatt 29556257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 264 - 352
Target Start/End: Original strand, 46328107 - 46328195
Alignment:
Q  264 gtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaattttctagtgaaatt 352  Q
    |||| ||||||||||||||||||||||||| |||||||| |||||| |||  |||||||||||||||||||| ||||| ||||| ||||    
T  46328107 gtctcgtggtattcaaaatcattcaaatttcgaaggattgtttaattaattggattttgatggattttgtgggattttgtagtgtaatt 46328195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 264 - 352
Target Start/End: Complemental strand, 48177597 - 48177509
Alignment:
Q  264 gtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaattttctagtgaaatt 352  Q
    |||| ||||||||||||||||||||||||| ||| |||| ||||||||||  |||||||||||||||||||| ||||| ||||| ||||    
T  48177597 gtcttgtggtattcaaaatcattcaaatttcgaatgattgtttaataaattggattttgatggattttgtgggattttgtagtgtaatt 48177509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 264 - 346
Target Start/End: Original strand, 25612222 - 25612304
Alignment:
Q  264 gtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaattttctagt 346  Q
    |||| |||||||||||||||||||||||||  ||||||| ||||||||||  |||||||||||||||||||| ||||| ||||    
T  25612222 gtcttgtggtattcaaaatcattcaaatttcaaaggattgtttaataaattggattttgatggattttgtgggattttgtagt 25612304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 269 - 346
Target Start/End: Complemental strand, 28387523 - 28387446
Alignment:
Q  269 gtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaattttctagt 346  Q
    |||||||||||| |||||||||||| |||||||| ||||||||||  |||||||||||||||||||| ||||| ||||    
T  28387523 gtggtattcaaattcattcaaatttcgaaggattgtttaataaattggattttgatggattttgtgggattttgtagt 28387446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 272 - 331
Target Start/End: Original strand, 955823 - 955882
Alignment:
Q  272 gtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggatttt 331  Q
    |||||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||    
T  955823 gtattcaaaatcattcaaatttcgaagggttgtttaataaatcagattttgatggatttt 955882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 269 - 352
Target Start/End: Complemental strand, 9322630 - 9322547
Alignment:
Q  269 gtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaattttctagtgaaatt 352  Q
    ||||||||||||||||||||||||| |||||||| ||||||||||   ||||||||||||||| ||| ||||| ||||| ||||    
T  9322630 gtggtattcaaaatcattcaaatttagaaggattgtttaataaattgaattttgatggattttatgggattttgtagtgtaatt 9322547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 264 - 333
Target Start/End: Original strand, 29219351 - 29219420
Alignment:
Q  264 gtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgt 333  Q
    |||| ||||||||||||||||||||||||  |||||||| ||||||||||  ||||||||||||||||||    
T  29219351 gtcttgtggtattcaaaatcattcaaattaagaaggattgtttaataaattggattttgatggattttgt 29219420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 269 - 352
Target Start/End: Complemental strand, 15835183 - 15835100
Alignment:
Q  269 gtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaattttctagtgaaatt 352  Q
    ||||||||||||||||||||||||   ||||||| ||||||||||  |||||||||||||||| ||| ||||| ||||| ||||    
T  15835183 gtggtattcaaaatcattcaaattgcaaaggattgtttaataaattggattttgatggattttatgggattttgtagtgtaatt 15835100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 264 - 331
Target Start/End: Original strand, 33025578 - 33025645
Alignment:
Q  264 gtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggatttt 331  Q
    |||| ||||||||||||||||||||||||| |||||||| ||||||| |||||||||||  |||||||    
T  33025578 gtcttgtggtattcaaaatcattcaaattttgaaggattgtttaatacatcagattttgtgggatttt 33025645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 264 - 333
Target Start/End: Complemental strand, 38536224 - 38536155
Alignment:
Q  264 gtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgt 333  Q
    |||| |||||||||||||| ||||||||||  ||||||| ||||||||||  ||||||||||||||||||    
T  38536224 gtcttgtggtattcaaaattattcaaatttcaaaggattgtttaataaattggattttgatggattttgt 38536155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 264 - 333
Target Start/End: Complemental strand, 38558442 - 38558373
Alignment:
Q  264 gtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgt 333  Q
    |||| |||||||||||||| ||||||||||  ||||||| ||||||||||  ||||||||||||||||||    
T  38558442 gtcttgtggtattcaaaattattcaaatttcaaaggattgtttaataaattggattttgatggattttgt 38558373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 264 - 313
Target Start/End: Original strand, 49230951 - 49231000
Alignment:
Q  264 gtctagtggtattcaaaatcattcaaatttggaaggattatttaataaat 313  Q
    |||| ||||||||||||||||||||||||| |||||||||||||||||||    
T  49230951 gtcttgtggtattcaaaatcattcaaatttcgaaggattatttaataaat 49231000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 264 - 352
Target Start/End: Complemental strand, 37014775 - 37014687
Alignment:
Q  264 gtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaattttctagtgaaatt 352  Q
    |||| ||| |||||||||||||||||||||  || |||| ||| ||||||   ||||||||||||||||| | ||||||||||||||||    
T  37014775 gtcttgtgatattcaaaatcattcaaatttctaaagattgttttataaattgaattttgatggattttgtcggattttctagtgaaatt 37014687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 264 - 322
Target Start/End: Original strand, 18798556 - 18798614
Alignment:
Q  264 gtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttg 322  Q
    |||| ||||||||||||||||||||||||| |||||||| ||||||||||  |||||||    
T  18798556 gtcttgtggtattcaaaatcattcaaatttcgaaggattgtttaataaattggattttg 18798614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 264 - 333
Target Start/End: Complemental strand, 5495231 - 5495162
Alignment:
Q  264 gtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgt 333  Q
    |||| |||||||||||||||||| ||||||  ||||||||||||||||||  |||||||  |||||||||    
T  5495231 gtctcgtggtattcaaaatcatttaaatttcaaaggattatttaataaattggattttgtgggattttgt 5495162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 272 - 322
Target Start/End: Complemental strand, 31622586 - 31622536
Alignment:
Q  272 gtattcaaaatcattcaaatttggaaggattatttaataaatcagattttg 322  Q
    ||||||||||||||||||||||  || |||| ||||||||||| |||||||    
T  31622586 gtattcaaaatcattcaaatttcaaaagattgtttaataaatcggattttg 31622536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 286 - 332
Target Start/End: Complemental strand, 43885203 - 43885157
Alignment:
Q  286 tcaaatttggaaggattatttaataaatcagattttgatggattttg 332  Q
    |||||||| ||| |||||||||||||||  |||||||||||||||||    
T  43885203 tcaaattttgaatgattatttaataaattggattttgatggattttg 43885157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 269 - 322
Target Start/End: Complemental strand, 48668905 - 48668852
Alignment:
Q  269 gtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttg 322  Q
    |||||||||||||| |||||||||| ||| |||| ||||||||||  |||||||    
T  48668905 gtggtattcaaaattattcaaatttcgaaagattgtttaataaattggattttg 48668852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 74; Significance: 7e-34; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 242 - 352
Target Start/End: Original strand, 102145 - 102255
Alignment:
Q  242 gactcttaatcacttnnnnnnngtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaatttt 341  Q
    |||||||||||||||       |||||||||||||||||||||||||||||| ||| |||| |||||||||||||||||||||||||||||||| |||||    
T  102145 gactcttaatcacttaaaaaaagtctagtggtattcaaaatcattcaaatttcgaaagattgtttaataaatcagattttgatggattttgtgggatttt 102244  T
Q  342 ctagtgaaatt 352  Q
    |||||||||||    
T  102245 ctagtgaaatt 102255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0151 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: scaffold0151
Description:

Target: scaffold0151; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 242 - 352
Target Start/End: Complemental strand, 38761 - 38652
Alignment:
Q  242 gactcttaatcacttnnnnnnngtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaatttt 341  Q
    |||||||||||||||       |||||||||||||||||||||||||||||| |||||||| |||||| ||||||||||||||||||||||||| |||||    
T  38761 gactcttaatcacttaaaaaaagtctagtggtattcaaaatcattcaaatttcgaaggattgtttaat-aatcagattttgatggattttgtgggatttt 38663  T
Q  342 ctagtgaaatt 352  Q
    |||||||||||    
T  38662 ctagtgaaatt 38652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0037 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: scaffold0037
Description:

Target: scaffold0037; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 242 - 352
Target Start/End: Original strand, 100261 - 100371
Alignment:
Q  242 gactcttaatcacttnnnnnnngtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaatttt 341  Q
    |||||||||||||||       ||||||||||||||||||||||||||||||  ||||||| |||||||||||| |||||||||||||||||||  ||||    
T  100261 gactcttaatcacttaaaaaaagtctagtggtattcaaaatcattcaaatttcaaaggattgtttaataaatcaaattttgatggattttgtgggttttt 100360  T
Q  342 ctagtgaaatt 352  Q
    |||||||||||    
T  100361 ctagtgaaatt 100371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1504 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: scaffold1504
Description:

Target: scaffold1504; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 264 - 352
Target Start/End: Original strand, 936 - 1023
Alignment:
Q  264 gtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaattttctagtgaaatt 352  Q
    |||| ||||||||||||||||||||||||| |||| |||||||||||||| ||||||||||||||||||||| ||||| ||||| ||||    
T  936 gtcttgtggtattcaaaatcattcaaatttcgaagaattatttaataaat-agattttgatggattttgtgggattttgtagtgtaatt 1023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 269 - 352
Target Start/End: Complemental strand, 39747 - 39664
Alignment:
Q  269 gtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaattttctagtgaaatt 352  Q
    |||||||||||||||||||||| || |||||||||||||||||||  |||||||||||||||||||| ||||| ||||| ||||    
T  39747 gtggtattcaaaatcattcaaacttcgaaggattatttaataaattggattttgatggattttgtgggattttgtagtgtaatt 39664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0042 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0042
Description:

Target: scaffold0042; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 269 - 346
Target Start/End: Complemental strand, 58206 - 58129
Alignment:
Q  269 gtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaattttctagt 346  Q
    ||||||||||||||||||||||||| ||| |||| ||||||||||  |||||||||||||||||||| ||||| ||||    
T  58206 gtggtattcaaaatcattcaaatttcgaatgattgtttaataaattggattttgatggattttgtgggattttgtagt 58129  T

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Target: scaffold0009 (Bit Score: 49; Significance: 6e-19; HSPs: 2)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 92 - 185
Target Start/End: Original strand, 146825 - 146910
Alignment:
Q  92 ccttaattagttatgcatttgacgctattacaagaataagaataagtaaataagagattccttctttccaatgtggtattatattacaactttt 185  Q
    ||||||||||| |||||||||| ||||| ||||||||        |||||||||||||||||||||||||||||||||||| ||||||||||||    
T  146825 ccttaattagtgatgcatttgaggctatcacaagaat--------gtaaataagagattccttctttccaatgtggtattaaattacaactttt 146910  T

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Target: scaffold0009; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 90
Target Start/End: Original strand, 146742 - 146779
Alignment:
Q  53 gtgactcagctttttggattttttcctttcaagaactt 90  Q
    |||||| |||||||||||||||| ||||||||||||||    
T  146742 gtgacttagctttttggatttttgcctttcaagaactt 146779  T

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Target: scaffold0922 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: scaffold0922
Description:

Target: scaffold0922; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 264 - 329
Target Start/End: Original strand, 4272 - 4337
Alignment:
Q  264 gtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggatt 329  Q
    |||| ||||||||||||||||||||||||| |||||||| ||||||||||  ||||||||||||||    
T  4272 gtcttgtggtattcaaaatcattcaaattttgaaggattgtttaataaattggattttgatggatt 4337  T

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Target: scaffold0054 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 271 - 352
Target Start/End: Complemental strand, 37035 - 36954
Alignment:
Q  271 ggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaattttctagtgaaatt 352  Q
    |||||||||||||||| |||||| |||| ||| ||||||||||  |||||||||||||||||||| ||||| ||||| ||||    
T  37035 ggtattcaaaatcattaaaatttcgaagcattgtttaataaattggattttgatggattttgtgggattttgtagtgtaatt 36954  T

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Target: scaffold0543 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: scaffold0543
Description:

Target: scaffold0543; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 269 - 352
Target Start/End: Original strand, 10637 - 10720
Alignment:
Q  269 gtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaattttctagtgaaatt 352  Q
    |||||||||||||||||||||||||  ||||||| ||||||||||   ||||||||||||||| ||| ||||| ||||| ||||    
T  10637 gtggtattcaaaatcattcaaatttcaaaggattgtttaataaattgaattttgatggattttatgggattttgtagtgtaatt 10720  T

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Target: scaffold0306 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: scaffold0306
Description:

Target: scaffold0306; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 264 - 333
Target Start/End: Original strand, 13954 - 14023
Alignment:
Q  264 gtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgt 333  Q
    |||| |||||||||||||||||||||||||  || |||| ||||||||||  ||||||||||||||||||    
T  13954 gtcttgtggtattcaaaatcattcaaatttcaaaagattgtttaataaattggattttgatggattttgt 14023  T

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Target: scaffold0152 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: scaffold0152
Description:

Target: scaffold0152; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 264 - 333
Target Start/End: Complemental strand, 21373 - 21304
Alignment:
Q  264 gtctagtggtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgt 333  Q
    |||| |||||||||||||||||||||||||  || |||| ||||||||||  ||||||||||||||||||    
T  21373 gtcttgtggtattcaaaatcattcaaatttcaaaagattgtttaataaattggattttgatggattttgt 21304  T

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Target: scaffold0007 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 272 - 350
Target Start/End: Original strand, 199905 - 199983
Alignment:
Q  272 gtattcaaaatcattcaaatttggaaggattatttaataaatcagattttgatggattttgtggaattttctagtgaaa 350  Q
    ||||| |||||||||||||||| ||| || | ||||||||||   |||||||| |||||||||  ||||| ||||||||    
T  199905 gtatttaaaatcattcaaattttgaaagagtgtttaataaattgaattttgattgattttgtgagattttttagtgaaa 199983  T

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Target: scaffold0839 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0839
Description:

Target: scaffold0839; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 352
Target Start/End: Complemental strand, 3792 - 3739
Alignment:
Q  299 gattatttaataaatcagattttgatggattttgtggaattttctagtgaaatt 352  Q
    |||| ||||||||||  |||||||||||||||||||| ||||| ||||| ||||    
T  3792 gattgtttaataaattggattttgatggattttgtgggattttgtagtgtaatt 3739  T

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