View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5071_low_12 (Length: 355)
Name: NF5071_low_12
Description: NF5071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5071_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 261; Significance: 1e-145; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 17 - 345
Target Start/End: Original strand, 39509915 - 39510243
Alignment:
| Q |
17 |
caagatgttcatcaagcaatatgtttgtggattttacatcgcggtgaatgataccaccagctgcccctttgtgaaggtattgaagacctcttgcagcacc |
116 |
Q |
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||||||| ||||||||||||||||| ||||| || ||||||||||||||||| ||||||||||| |||||||||||||| ||||||||||| |||||||| |
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| T |
39509915 |
caagatgctcatcaagcaatatgttagtggacttcacatcgcggtgaatgattccaccagctgctcctttgtgaaggtaatgaagacctctagcagcacc |
39510014 |
T |
|
| Q |
117 |
aatacaaatctcaagcctttgcttccaagtcaagaaactaggcaaatttgcactgtacagactatctctaagtgtcccattttccatgtactcataaaca |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| ||| |||||||||| ||||||||||||||||||||| |
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| T |
39510015 |
aatacaaatctcaagcctttgcttccaagtcaagaaactaggcaaatttgcaccttacaaactttctttaagtgtccccttttccatgtactcataaaca |
39510114 |
T |
|
| Q |
217 |
agtatcatctcatacctttcatcacaatacccaattaaggaaacaaggtgccgatgacgaatctttgacaaaaccattatctcagtttgaaattcaggca |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| | |
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| T |
39510115 |
agtatcatctcatacctttcatcacaatacccaattaaggaaacaaggtgtcgatgacgaatctttgacaaaaccattatctcagtctgaaattcaggta |
39510214 |
T |
|
| Q |
317 |
gtccttgacctgaccctggctcacttctt |
345 |
Q |
| |
|
||||||||||||||||||||||||||||| |
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| T |
39510215 |
gtccttgacctgaccctggctcacttctt |
39510243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 25 - 345
Target Start/End: Original strand, 39579356 - 39579676
Alignment:
| Q |
25 |
tcatcaagcaatatgtttgtggattttacatcgcggtgaatgataccaccagctgcccctttgtgaaggtattgaagacctcttgcagcaccaatacaaa |
124 |
Q |
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|||||||||||||| || |||||||| ||||| ||||| || || |||||||| | |||||||||||||| ||||||||||| |||||||||||||||| |
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| T |
39579356 |
tcatcaagcaatatattagtggatttcacatcacggtggattattccaccagcaactcctttgtgaaggtaatgaagacctctagcagcaccaatacaaa |
39579455 |
T |
|
| Q |
125 |
tctcaagcctttgcttccaagtcaagaaactaggcaaatttgcactgtacagactatctctaagtgtcccattttccatgtactcataaacaagtatcat |
224 |
Q |
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||||||||||||||||||||||||| |||||||||||| || | |||||| | | ||| |||||||||| |||||||| || ||||||||||||||||| |
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| T |
39579456 |
tctcaagcctttgcttccaagtcaaaaaactaggcaaacttttattgtacaaattctctttaagtgtccctttttccatatattcataaacaagtatcat |
39579555 |
T |
|
| Q |
225 |
ctcatacctttcatcacaatacccaattaaggaaacaaggtgccgatgacgaatctttgacaaaaccattatctcagtttgaaattcaggcagtccttga |
324 |
Q |
| |
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|||||||| ||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| || ||||||||| ||||||||| |
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| T |
39579556 |
ctcatacccttcatcacaatacccaattaaggaaacaaggtgtatgtgacgaatcttggacaaaaccattatctcagcttcaaattcaggaagtccttga |
39579655 |
T |
|
| Q |
325 |
cctgaccctggctcacttctt |
345 |
Q |
| |
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|||||||| ||| | |||||| |
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|
| T |
39579656 |
cctgaccccggcacccttctt |
39579676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 28 - 345
Target Start/End: Original strand, 39574826 - 39575140
Alignment:
| Q |
28 |
tcaagcaatatgtttgtggattttacatcgcggtgaatgataccaccagctgcccctttgtgaaggtattgaagacctcttgcagcaccaatacaaatct |
127 |
Q |
| |
|
||||||||||| || |||||||| ||||| ||||| || || ||||| ||| | |||||||||||||| ||||||||||| ||||||||||| ||||||| |
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|
| T |
39574826 |
tcaagcaatatattagtggatttcacatcacggtggattattccaccggctactcctttgtgaaggtaatgaagacctctagcagcaccaatgcaaatct |
39574925 |
T |
|
| Q |
128 |
caagcctttgcttccaagtcaagaaactaggcaaatttgcactgtacagactatctctaagtgtcccattttccatgtactcataaacaagtatcatctc |
227 |
Q |
| |
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|||||||||||||||||||||| || ||||||||||| | ||||| | ||||||||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
39574926 |
caagcctttgcttccaagtcaa---acaaggcaaatttgtatcgtacaaattatctctaagtgtcccattttccatgtactcgtaaacaagtatcatctc |
39575022 |
T |
|
| Q |
228 |
atacctttcatcacaatacccaattaaggaaacaaggtgccgatgacgaatctttgacaaaaccattatctcagtttgaaattcaggcagtccttgacct |
327 |
Q |
| |
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| |||||||||||||||| ||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| | ||||||||||| |
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| T |
39575023 |
acacctttcatcacaatatgcaattaaggaaacaaggtgtatgtgacgaatcttggacaaaaccattatctcagtttgaaattcatgacgtccttgacct |
39575122 |
T |
|
| Q |
328 |
gaccctggctcacttctt |
345 |
Q |
| |
|
|| |||||| | |||||| |
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| T |
39575123 |
gaacctggcacgcttctt |
39575140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 25 - 345
Target Start/End: Original strand, 39542988 - 39543305
Alignment:
| Q |
25 |
tcatcaagcaatatgtttgtggattttacatcgcggtgaatgataccaccagctgcccctttgtgaaggtattgaagacctcttgcagcaccaatacaaa |
124 |
Q |
| |
|
|||||||||||||| || |||||||| || || |||||||| || ||||||||| | |||||||||||||| ||||||||||| ||||||||||| |||| |
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| T |
39542988 |
tcatcaagcaatatattagtggatttcacgtcacggtgaattattccaccagctactcctttgtgaaggtaatgaagacctctagcagcaccaatgcaaa |
39543087 |
T |
|
| Q |
125 |
tctcaagcctttgcttccaagtcaagaaactaggcaaatttgcactgtacagactatctctaagtgtcccattttccatgtactcataaacaagtatcat |
224 |
Q |
| |
|
||||||||||||||||||||||| |||| ||||||||||| | |||| | | | || |||||||| |||||||||||||||||||||||||||||||| |
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| T |
39543088 |
tctcaagcctttgcttccaagtc---aaacaaggcaaatttgtattgtataaattctccctaagtgtaccattttccatgtactcataaacaagtatcat |
39543184 |
T |
|
| Q |
225 |
ctcatacctttcatcacaatacccaattaaggaaacaaggtgccgatgacgaatctttgacaaaaccattatctcagtttgaaattcaggcagtccttga |
324 |
Q |
| |
|
|||| ||||||||||||||||||| ||||||||||||||||| ||||||||||| |||| ||||||||||||||||||||||||| | |||||||| |
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| T |
39543185 |
ctcacacctttcatcacaataccctattaaggaaacaaggtgtttgtgacgaatcttggacagaaccattatctcagtttgaaattcatgttgtccttga |
39543284 |
T |
|
| Q |
325 |
cctgaccctggctcacttctt |
345 |
Q |
| |
|
||||| || ||| |||||||| |
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| T |
39543285 |
cctgaacccggcacacttctt |
39543305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 184 - 345
Target Start/End: Original strand, 39520340 - 39520501
Alignment:
| Q |
184 |
ctaagtgtcccattttccatgtactcataaacaagtatcatctcatacctttcatcacaatacccaattaaggaaacaaggtgccgatgacgaatctttg |
283 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | |
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| T |
39520340 |
ctaagtgtccccttttccatgtactcataaacaagtatcatctcatacctttcatcacaatacccaattaaggaaacaagatgccgatgacgaatcttgg |
39520439 |
T |
|
| Q |
284 |
acaaaaccattatctcagtttgaaattcaggcagtccttgacctgaccctggctcacttctt |
345 |
Q |
| |
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||||||||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||| |
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| T |
39520440 |
acaaaaccattatctcagtctgaaattcaggcagaccttgacctgatcctggctcacttctt |
39520501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 86 - 143
Target Start/End: Original strand, 35904669 - 35904726
Alignment:
| Q |
86 |
tgtgaaggtattgaagacctcttgcagcaccaatacaaatctcaagcctttgcttcca |
143 |
Q |
| |
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|||||||||| ||||||||||||||||||||||| |||||||| | |||||||||||| |
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|
| T |
35904669 |
tgtgaaggtaatgaagacctcttgcagcaccaatgcaaatctccaacctttgcttcca |
35904726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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