View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5071_low_15 (Length: 337)
Name: NF5071_low_15
Description: NF5071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5071_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 17 - 330
Target Start/End: Complemental strand, 38643152 - 38642831
Alignment:
| Q |
17 |
gaaatttgaatcgattttctgaagaattatttgaagaaaaagtagagnnnnnnntggtggctgaagcagaggttgttgtgtgtcaacaaagcgtggatgt |
116 |
Q |
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| T |
38643152 |
gaaatttgaatcgattttctgaagaattatttgaagaaaaagtagagaaaaaaatggtggctgaagcagaggttgttgtgtgtcaacaaagcgtggatgt |
38643053 |
T |
|
| Q |
117 |
gaagtattttccgaataaaggaagcaataatcacgagatcggtgatgtagattcgaattttgatcgagttcgtgtttctgaatcagtttctgctgagtta |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38643052 |
gaagtattttccgaataaaggaagcaataatcacgagatcggtgatgtagattcgaattttgatcgagttcgtgtttctgaatcagtttctgctgagtta |
38642953 |
T |
|
| Q |
217 |
cttactacaaaagaagttagttttttcagatacccttttcagaatttcttc--------tgttgttggatgatgtagatgctaattgggtttgatgggtt |
308 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
38642952 |
cttactacaaaagaagttagttttttcagatacccttttgagaatttcttctgattttgtgttgttggatgatgtagatgctaattgggtttgatgggtt |
38642853 |
T |
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| Q |
309 |
tcgttctttctcttcgtctgtg |
330 |
Q |
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||||||||||||||||| |||| |
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| T |
38642852 |
tcgttctttctcttcgtttgtg |
38642831 |
T |
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