View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5071_low_17 (Length: 331)
Name: NF5071_low_17
Description: NF5071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5071_low_17 |
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Alignment Details
Target: chr8 (Bit Score: 253; Significance: 1e-140; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 13 - 297
Target Start/End: Complemental strand, 39711235 - 39710951
Alignment:
| Q |
13 |
gagatgatgatggaccttgatgttcatggttgtggtgtggagagataacgacaaccttaaacttttcaccattttggcaattcactccactaatgaagta |
112 |
Q |
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| T |
39711235 |
gagatgatgatggaccttgatgttcatggttgtggtgtggagagataacgacgaccttaaacttttcaccattttggcaattcactccactaatgaagta |
39711136 |
T |
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| Q |
113 |
aaagggacctgttttgttcaatgaaaaagttgactctccatcatccatcttgtagatcggattctttgcgtcgcatgaattatagtcttggttgtttacc |
212 |
Q |
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| T |
39711135 |
aaagggacctgttttattcaatgaaaaagttgactctccatcgtccatcttgtagatcagattctttgtgtcgcatgaatcatagttttggttgtttacc |
39711036 |
T |
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| Q |
213 |
accaacacagaatcagatcctttgttatatttgaaacctgcataccaaacaacaccatcacaaaagataaaacaaaaatttacaa |
297 |
Q |
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| T |
39711035 |
accaacacagaatcagatcctttgttatacttgaaacctgcataccaaacaacaccatcacaaaagataaaacaaaaatttacaa |
39710951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 66 - 261
Target Start/End: Complemental strand, 39704612 - 39704411
Alignment:
| Q |
66 |
accttaaacttttcaccattttggcaattcac------tccactaatgaagtaaaagggacctgttttgttcaatgaaaaagttgactctccatcatcca |
159 |
Q |
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| T |
39704612 |
accttcaacttttgaccattttggcaattcacaaggtttccactgatgaagtgaaagagacctactttgtcaaacttataaattgaatctccatcatgca |
39704513 |
T |
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| Q |
160 |
tcttgtagatcggattctttgcgtcgcatgaattatagtcttggttgtttaccaccaacacagaatcagatcctttgttatatttgaaacctgcatacca |
259 |
Q |
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| T |
39704512 |
tcttgtggattggatttttgatgttgcatgaatcataatcgtgtttgtttaccaccaatactgaatcggatcctttgttgtacttgaaaactgcatgcca |
39704413 |
T |
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| Q |
260 |
aa |
261 |
Q |
| |
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|| |
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| T |
39704412 |
aa |
39704411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 39 - 266
Target Start/End: Original strand, 39690582 - 39690815
Alignment:
| Q |
39 |
tggttgtggtgtggagagataacgacaaccttaaacttttcaccattttggcaattcac------tccactaatgaagtaaaagggacctgttttgttca |
132 |
Q |
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| T |
39690582 |
tggtggtggcgtggagagtaaacaacgacctttaacttttgaccattttgacaattcacaaggtttccactgatgaagtaaaagagacttactttgtcaa |
39690681 |
T |
|
| Q |
133 |
atgaaaaagttgactctccatcatccatcttgtagatcggattctttgcgtcgcatgaattatagtcttggttgtttaccaccaacacagaatcagatcc |
232 |
Q |
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| T |
39690682 |
acttataagttgaatctccatcgctcatcttgtggattggatttttgatgttgcatgaatcataatcgtgtttgtttaccaccaatactgaatcaaatcc |
39690781 |
T |
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| Q |
233 |
tttgttatatttgaaacctgcataccaaacaaca |
266 |
Q |
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| T |
39690782 |
gttgttgtacttgaaaactgcatgccaaaaaaca |
39690815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 98 - 255
Target Start/End: Original strand, 42094795 - 42094952
Alignment:
| Q |
98 |
tccactaatgaagtaaaagggacctgttttgttcaatgaaaaagttgactctccatcatccatcttgtagatcggattctttgcgtcgcatgaattatag |
197 |
Q |
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|||||||||||||||||||||||||| |||| |||| ||| | ||| |||||| | ||||||||||| ||||| || || | || |||||||| || |
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| T |
42094795 |
tccactaatgaagtaaaagggacctgacttgtccaattgaaaggctgaatctccaccttccatcttgtaaatcgggtttttggtgttgcatgaatcatga |
42094894 |
T |
|
| Q |
198 |
tcttggttgtttaccaccaacacagaatcagatcctttgttatatttgaaacctgcat |
255 |
Q |
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| T |
42094895 |
tcttgtttgtttacaaccaacactgaatcaatttctttgttatacttgaaatctgcat |
42094952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 98 - 254
Target Start/End: Original strand, 38711412 - 38711568
Alignment:
| Q |
98 |
tccactaatgaagtaaaagggacctgttttgttcaatgaaaaagttgactctccatcatccatcttgtagatcggattctttgcgtcgcatgaattatag |
197 |
Q |
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|||||| ||||||||||||||||||| ||||| |||| |||||||| | |||| ||| ||| || ||| |||||||| | || |||||||| ||| |
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| T |
38711412 |
tccactgatgaagtaaaagggacctgatttgtccaataggaaagttgaatgtccactgtccctctcgtggattggattcttggtgttgcatgaatcataa |
38711511 |
T |
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| Q |
198 |
tcttggttgtttaccaccaacacagaatcagatcctttgttatatttgaaacctgca |
254 |
Q |
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||||| |||||||| ||||||| ||||| |||||||| | ||| |||||| ||||| |
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| T |
38711512 |
tcttgtttgtttacttccaacactgaatcggatcctttatgatacttgaaatctgca |
38711568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 72 - 248
Target Start/End: Original strand, 38719908 - 38720090
Alignment:
| Q |
72 |
aacttttcaccattttggcaattcac------tccactaatgaagtaaaagggacctgttttgttcaatgaaaaagttgactctccatcatccatcttgt |
165 |
Q |
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| T |
38719908 |
aacttttcacccttttggcaattctcaacgattccactgatgaagaaaaagggacctgacttgtcaaatttaaaggttgaatctccatcgtccaacttaa |
38720007 |
T |
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| Q |
166 |
agatcggattctttgcgtcgcatgaattatagtcttggttgtttaccaccaacacagaatcagatcctttgttatatttgaaa |
248 |
Q |
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| T |
38720008 |
gaattggatttttggtgttgcatgaatcaaagtcttgtttgttaaccaccaatactgaatcggatcctttattatacttgaaa |
38720090 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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