View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5071_low_2 (Length: 622)
Name: NF5071_low_2
Description: NF5071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5071_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 292; Significance: 1e-163; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 292; E-Value: 1e-163
Query Start/End: Original strand, 6 - 374
Target Start/End: Original strand, 40121595 - 40121973
Alignment:
| Q |
6 |
agcagcacagaccataccactgctaagaacattgttccttctcttccaatgaaaaatctatcaagcagaaacaatgttgaagtgtcctctccattagtgc |
105 |
Q |
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| T |
40121595 |
agcaccacagaccataccactgctaagaatattgttccttctcttccaatgaaaaatctatcaagcagagacaatgttgaagtgtcctctccattagtgc |
40121694 |
T |
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| Q |
106 |
cggtgagcactactactaccagctggtatcaatactttcaagctgaatattttggaaagaattatgaggaaaaggaggtaatatgtacacctagtttgtt |
205 |
Q |
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| T |
40121695 |
cggtgagcactactactaccagctggtatcaatactttcaagctgaatattttggaaagaattatgaggaaaaggaggtaata---acacctagtttgtt |
40121791 |
T |
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| Q |
206 |
ggaaatgaatttgttctcaccaacttcttttggtaactggtgttttgttcctcccatcatgaacccaagagtttgatctgtttggaagctgttccttagc |
305 |
Q |
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| T |
40121792 |
ggaaatgaatttgttctcaccaacttcttttggtaactggtgttttgttcctcccatcatgaacccaagagtttgatctgtttggaagctgttctttagc |
40121891 |
T |
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| Q |
306 |
tagatttt-------------ttagaattgtacgcgacgttgattagaattttcagctgctgcgcgtaaactgttcttctat |
374 |
Q |
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| T |
40121892 |
taggtttttagaatggattcatttgaattgtacgggacgtcgattagaattttcagctgctgcgcgtaaactgttcttctat |
40121973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 42 - 296
Target Start/End: Original strand, 40125283 - 40125534
Alignment:
| Q |
42 |
ccttctcttccaatgaaaaatctatcaagcagaaacaatgttgaagtgtcctctccattagtgccggtgagcactactactaccagctggtatcaatact |
141 |
Q |
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| T |
40125283 |
ccttcccttccaatgaaaaacttcacaaacaaagacactgttgaagtgtcccctccattagagccagtgagtactactaata---gctggtatcagtact |
40125379 |
T |
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| Q |
142 |
ttcaagctgaatattttggaaagaattatga---ggaaaaggaggtaatatgtacacctagtttgttggaaatgaatttgttctcaccaacttcttttgg |
238 |
Q |
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| T |
40125380 |
ttcaagctgaatattttggaaagaataatgatcaggaagaggaggtaata---acccctagtttgttggaattgaatttgctctcaccaacttcttttgg |
40125476 |
T |
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| Q |
239 |
taactggtgttttgttcctcccatcatgaacccaagagtttgatctgtttggaagctg |
296 |
Q |
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| T |
40125477 |
taactggtgttttgttcctcccatcatcaccccaagagtttgatttgtttggaagctg |
40125534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 123; E-Value: 7e-63
Query Start/End: Original strand, 42 - 299
Target Start/End: Original strand, 40092811 - 40093065
Alignment:
| Q |
42 |
ccttctcttccaatgaaaaatctatcaagcagaaacaatgttgaagtgtcctctccattagtgccggtgagcactactactaccagctggtatcaatact |
141 |
Q |
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| T |
40092811 |
ccttcccttccaatgaaaaacttcacaaacaaagacagtgttgaagtgtcccctccattagagccagtgagtactactaata---gctggtatcagtact |
40092907 |
T |
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| Q |
142 |
ttcaagctgaatattttggaaagaattatga---ggaaaaggaggtaatatgtacacctagtttgttggaaatgaatttgttctcaccaacttcttttgg |
238 |
Q |
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| T |
40092908 |
ttcaagctgaatattttggaaagaataatgatcaggaagaggaggtaata---acccctagtttgttggaattgaatttgctctcaccaacttcttttgg |
40093004 |
T |
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| Q |
239 |
taactggtgttttgttcctcccatcatgaacccaagagtttgatctgtttggaagctgttc |
299 |
Q |
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| T |
40093005 |
taactggtgttttgttcctcccatcatcaccccaagagtttgatttgtttggaggctgttc |
40093065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 463 - 590
Target Start/End: Original strand, 40121984 - 40122111
Alignment:
| Q |
463 |
ttttgagttcaccaaatgccaaaaagactatacattcattaactgatattgcagattgctgttatcttaaacttgtatccagtagctatgatacttggtt |
562 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| |
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| T |
40121984 |
ttttgagttcaccaaatgccaaaaagactatacattcattaactgatattgcagattgctgttatcttaaacttatatccagcagctatgatacttggtt |
40122083 |
T |
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| Q |
563 |
cattttgacattgaataatatgtcttat |
590 |
Q |
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| T |
40122084 |
cattttgacattgaataatatgtcttat |
40122111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 441 - 494
Target Start/End: Original strand, 40093333 - 40093386
Alignment:
| Q |
441 |
ttcaaatttaatttaacatttcttttgagttcaccaaatgccaaaaagactata |
494 |
Q |
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| T |
40093333 |
ttcaaatttaatttaacttttattttgatttcatcaaatgccataaagactata |
40093386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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