View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5071_low_24 (Length: 267)
Name: NF5071_low_24
Description: NF5071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5071_low_24 |
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Alignment Details
Target: chr7 (Bit Score: 78; Significance: 2e-36; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 130 - 215
Target Start/End: Complemental strand, 32274192 - 32274107
Alignment:
| Q |
130 |
tgttttggcatttgattacacgttccaataaattcttactatatttgtttacctaactaattccccaacattttccttccttaatt |
215 |
Q |
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| T |
32274192 |
tgttttggcatttgattacacgttccaataaattcttactctatctgtttacctaactaattccccaacattttccttccttaatt |
32274107 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 11 - 56
Target Start/End: Complemental strand, 32274337 - 32274292
Alignment:
| Q |
11 |
cacagaagatcatttttctattcaaatcatgaccctttgatgataa |
56 |
Q |
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| T |
32274337 |
cacagaagatcatttttctattcaaatcatgacccttagatgataa |
32274292 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 53 - 110
Target Start/End: Complemental strand, 32274249 - 32274192
Alignment:
| Q |
53 |
ataaccatttcgaactcagaatcctttacacattaaataggtaaggagtcttcgtcct |
110 |
Q |
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| T |
32274249 |
ataaccatttcggactgagaatcctttgcacattaagtaggtaaggagtcttagtcct |
32274192 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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