View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5071_low_26 (Length: 259)

Name: NF5071_low_26
Description: NF5071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5071_low_26
NF5071_low_26
[»] chr6 (9 HSPs)
chr6 (1-245)||(5163631-5163857)
chr6 (4-175)||(5889108-5889279)
chr6 (1-223)||(5883927-5884143)
chr6 (1-215)||(5853766-5853974)
chr6 (12-215)||(5830836-5831033)
chr6 (1-215)||(5881211-5881419)
chr6 (13-175)||(5761945-5762106)
chr6 (12-179)||(5821504-5821671)
chr6 (50-105)||(2715409-2715464)
[»] scaffold0087 (5 HSPs)
scaffold0087 (12-215)||(40949-41146)
scaffold0087 (13-175)||(13511-13672)
scaffold0087 (12-167)||(30916-31071)
scaffold0087 (12-168)||(20568-20724)
scaffold0087 (12-175)||(34908-35070)


Alignment Details
Target: chr6 (Bit Score: 170; Significance: 3e-91; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 5163631 - 5163857
Alignment:
Q  1 tgaaaatgttggaatcactcgacttgtcaagaaaccatctttcaggtaaaatgccaacaagcttttcaaatttgacatttcttagttacatgaacttgtc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||                     
T  5163631 tgaaaatgttggaatcactcgacttgtcaagaaaccatctttcaggtaaaatgccaacaaacttttcaaatttgacatttctt----------------- 5163713  T
Q  101 tttcaacaacttagaaggcaaaattccactaagcactcaactacaatcttttgatccctctgcatatgtcgggaacagttatgagtgactttgtggacaa 200  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||     
T  5163714 -ttcaacaacttagaaggcaaaattccactaagcactcaactacaatcttttgatccctctgcatatgtcgggaacagttatgaatgactttgtggacag 5163812  T
Q  201 ccactcataaatcttcgccctggagatagccatgacacacatgtt 245  Q
    ||||||||||||||| |||||||||||||||||||||||||||||    
T  5163813 ccactcataaatctttgccctggagatagccatgacacacatgtt 5163857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 4 - 175
Target Start/End: Complemental strand, 5889279 - 5889108
Alignment:
Q  4 aaatgttggaatcactcgacttgtcaagaaaccatctttcaggtaaaatgccaacaagcttttcaaatttgacatttcttagttacatgaacttgtcttt 103  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5889279 aaatgttggaatcactcgacttgtcaagaaaccatctttcgggtaaaatgccaacaagcttttcaaatttgacatttcttagttacatgaacttgtcttt 5889180  T
Q  104 caacaacttagaaggcaaaattccactaagcactcaactacaatcttttgatccctctgcatatgtcgggaa 175  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| || |||||    
T  5889179 caataacttagaaggcaaaattccactaagcactcaactacaatcttttgatccttctacatacgtggggaa 5889108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 5883927 - 5884143
Alignment:
Q  1 tgaaaatgttggaatcactcgacttgtcaagaaaccatctttcaggtaaaatgccaacaagcttttcaaatttgacatttcttagttacatgaacttgtc 100  Q
    |||||||||| |||||||| ||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| ||||||||||| ||||    
T  5883927 tgaaaatgttagaatcacttgacttgtcaagaaaccatctttcgggtagaatgccaacaagcttttcaaatttgacatttcttggttacatgaacctgtc 5884026  T
Q  101 tttcaacaacttagaaggcaaaattccactaagcactcaactacaatcttttgatccctctgcatatgtcgggaacagttatgagtgactttgtggacaa 200  Q
     ||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||| ||||      || |  ||||||||||||||    
T  5884027 gttcaacaacttagaaggcaaaattccactaagcactcaactacaaacttttgattcctcttcatatgtgggga------ataatcgactttgtggacaa 5884120  T
Q  201 ccactcataaatcttcgccctgg 223  Q
    || |||||||||||| |||||||    
T  5884121 ccgctcataaatctttgccctgg 5884143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 5853766 - 5853974
Alignment:
Q  1 tgaaaatgttggaatcactcgacttgtcaagaaaccatctttcaggtaaaatgccaacaagcttttcaaatttgacatttcttagttacatgaacttgtc 100  Q
    |||||||||| ||||| ||||| |||||||||||||||||||| |||| |||||||||||||||||||||||| |||| |||||||||||||||||||||    
T  5853766 tgaaaatgttagaatcgctcgatttgtcaagaaaccatctttctggtagaatgccaacaagcttttcaaatttaacatctcttagttacatgaacttgtc 5853865  T
Q  101 tttcaacaacttagaaggcaaaattccactaagcactcaactacaatcttttgatccctctgcatatgtcgggaacagttatgagtgactttgtggacaa 200  Q
    |||||||||||||||||||||||||||| |||||||||| |||||| |||||||| ||| | ||||||| ||||      || |  |||||||||||| |    
T  5853866 tttcaacaacttagaaggcaaaattccaataagcactcagctacaaacttttgattcctattcatatgtgggga------ataatcgactttgtggacca 5853959  T
Q  201 ccactcataaatctt 215  Q
    |||||||||||||||    
T  5853960 ccactcataaatctt 5853974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 12 - 215
Target Start/End: Original strand, 5830836 - 5831033
Alignment:
Q  12 gaatcactcgacttgtcaagaaaccatctttcaggtaaaatgccaacaagcttttcaaatttgacatttcttagttacatgaacttgtctttcaacaact 111  Q
    |||||||||||||||||||||||||||||||| |||| ||||||||| ||||||||||||||||||||||||| | ||||||||||||||||||| ||||    
T  5830836 gaatcactcgacttgtcaagaaaccatctttctggtagaatgccaacgagcttttcaaatttgacatttcttaataacatgaacttgtctttcaataact 5830935  T
Q  112 tagaaggcaaaattccactaagcactcaactacaatcttttgatccctctgcatatgtcgggaacagttatgagtgactttgtggacaaccactcataaa 211  Q
    |||| |||||||||||| ||||||||||||||||| |||||||| ||| | ||||||| ||||      || |  |||||||||||| ||||||||||||    
T  5830936 tagacggcaaaattccagtaagcactcaactacaaacttttgattcctattcatatgtgggga------ataatcgactttgtggaccaccactcataaa 5831029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 5881211 - 5881419
Alignment:
Q  1 tgaaaatgttggaatcactcgacttgtcaagaaaccatctttcaggtaaaatgccaacaagcttttcaaatttgacatttcttagttacatgaacttgtc 100  Q
    |||||||||| |||||| | |||||||||||||| ||||| |  ||||||||||||||||||||||||| ||||||||||||| ||||||||||| ||||    
T  5881211 tgaaaatgttagaatcattggacttgtcaagaaatcatctctacggtaaaatgccaacaagcttttcaagtttgacatttcttggttacatgaacctgtc 5881310  T
Q  101 tttcaacaacttagaaggcaaaattccactaagcactcaactacaatcttttgatccctctgcatatgtcgggaacagttatgagtgactttgtggacaa 200  Q
     |||||||| |||||||| |||||||||||| | |||||||||||| ||||| |||||||||||||||| |||||||||       |||||||||||||     
T  5881311 gttcaacaatttagaagggaaaattccactaggtactcaactacaaacttttcatccctctgcatatgtggggaacagt------ggactttgtggacag 5881404  T
Q  201 ccactcataaatctt 215  Q
    |||||||||||||||    
T  5881405 ccactcataaatctt 5881419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 13 - 175
Target Start/End: Original strand, 5761945 - 5762106
Alignment:
Q  13 aatcactcgacttgtcaagaaaccatctttcaggtaaaatgccaacaagcttttcaaatttgacatttcttagttacatgaacttgtctttcaacaactt 112  Q
    |||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||    
T  5761945 aatcactcgacttgtcaataaaccatctttcaggtagaatgccaacaagcttttcaaatttgacatttcttagtcacatgaacttgt-tttcaacaactt 5762043  T
Q  113 agaaggcaaaattccactaagcactcaactacaatcttttgatccctctgcatatgtcgggaa 175  Q
    ||||||||| |||||  ||||||||||||||||| ||||||  |||||  ||||||| |||||    
T  5762044 agaaggcaatattcccataagcactcaactacaaacttttggcccctcatcatatgttgggaa 5762106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 12 - 179
Target Start/End: Original strand, 5821504 - 5821671
Alignment:
Q  12 gaatcactcgacttgtcaagaaaccatctttcaggtaaaatgccaacaagcttttcaaatttgacatttcttagttacatgaacttgtctttcaacaact 111  Q
    |||||| | |||||||||||||| ||||| |  ||||||||||||||||||||||||| ||||||||||||| ||||||||||| |||| |||||||| |    
T  5821504 gaatcattggacttgtcaagaaatcatctctacggtaaaatgccaacaagcttttcaagtttgacatttcttggttacatgaacctgtcattcaacaatt 5821603  T
Q  112 tagaaggcaaaattccactaagcactcaactacaatcttttgatccctctgcatatgtcgggaacagt 179  Q
    ||||||| ||||||||||||||||||||||||||| |||||||||| ||| ||||||| |||||||||    
T  5821604 tagaagggaaaattccactaagcactcaactacaaacttttgatccatcttcatatgtggggaacagt 5821671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 50 - 105
Target Start/End: Complemental strand, 2715464 - 2715409
Alignment:
Q  50 aatgccaacaagcttttcaaatttgacatttcttagttacatgaacttgtctttca 105  Q
    |||||||||||||||| | |||||||||||  | ||||||||||||||||||||||    
T  2715464 aatgccaacaagctttgctaatttgacattcataagttacatgaacttgtctttca 2715409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0087 (Bit Score: 133; Significance: 3e-69; HSPs: 5)
Name: scaffold0087
Description:

Target: scaffold0087; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 12 - 215
Target Start/End: Original strand, 40949 - 41146
Alignment:
Q  12 gaatcactcgacttgtcaagaaaccatctttcaggtaaaatgccaacaagcttttcaaatttgacatttcttagttacatgaacttgtctttcaacaact 111  Q
    |||||||| ||||||||||||||||||||||| || | ||||||| ||||||||||  ||||||||||||||||||||||||||||||| ||||||||||    
T  40949 gaatcacttgacttgtcaagaaaccatctttctgggagaatgccaccaagcttttcgtatttgacatttcttagttacatgaacttgtcgttcaacaact 41048  T
Q  112 tagaaggcaaaattccactaagcactcaactacaatcttttgatccctctgcatatgtcgggaacagttatgagtgactttgtggacaaccactcataaa 211  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||       ||||||||||||| |||||||||||    
T  41049 tagaaggtaaaattccactaagcactcaactacaatcttttgatccctctacatatgtcgggaacagt------ggactttgtggacagccactcataaa 41142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0087; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 13 - 175
Target Start/End: Original strand, 13511 - 13672
Alignment:
Q  13 aatcactcgacttgtcaagaaaccatctttcaggtaaaatgccaacaagcttttcaaatttgacatttcttagttacatgaacttgtctttcaacaactt 112  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||    
T  13511 aatcactcgacttgtcaagaaaccatctttcaggtagaatgccaacaagcttttcaaatttgacatttcttagtcacatgaacttgt-tttcaacaactt 13609  T
Q  113 agaaggcaaaattccactaagcactcaactacaatcttttgatccctctgcatatgtcgggaa 175  Q
    ||||||||| |||||  ||||||||||||||||| ||||||  |||||  ||||||| |||||    
T  13610 agaaggcaatattcccataagcactcaactacaaacttttggcccctcatcatatgttgggaa 13672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0087; HSP #3
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 12 - 167
Target Start/End: Original strand, 30916 - 31071
Alignment:
Q  12 gaatcactcgacttgtcaagaaaccatctttcaggtaaaatgccaacaagcttttcaaatttgacatttcttagttacatgaacttgtctttcaacaact 111  Q
    |||||||| ||||| |||||||| ||| ||||||||| ||||||||| |||||  |||||||||||||||||||||||||| ||||||||||||||||||    
T  30916 gaatcactagacttatcaagaaaacatatttcaggtagaatgccaacgagcttaacaaatttgacatttcttagttacatggacttgtctttcaacaact 31015  T
Q  112 tagaaggcaaaattccactaagcactcaactacaatcttttgatccctctgcatat 167  Q
    ||||||| |||||||||||||||||||||||||||||||||||||| ||| |||||    
T  31016 tagaaggaaaaattccactaagcactcaactacaatcttttgatccatctacatat 31071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0087; HSP #4
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 12 - 168
Target Start/End: Original strand, 20568 - 20724
Alignment:
Q  12 gaatcactcgacttgtcaagaaaccatctttcaggtaaaatgccaacaagcttttcaaatttgacatttcttagttacatgaacttgtctttcaacaact 111  Q
    |||||||| ||||| |||||||| ||| |||| |||| |||||| || ||||| ||||||||||||||||||||||||||| ||||||||||||||||||    
T  20568 gaatcacttgacttctcaagaaatcatatttctggtagaatgccgacgagcttctcaaatttgacatttcttagttacatggacttgtctttcaacaact 20667  T
Q  112 tagaaggcaaaattccactaagcactcaactacaatcttttgatccctctgcatatg 168  Q
    ||||||| |||||||||||| ||||||||||||||||||||| ||| ||| ||||||    
T  20668 tagaaggaaaaattccactatgcactcaactacaatcttttggtccatctacatatg 20724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0087; HSP #5
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 12 - 175
Target Start/End: Original strand, 34908 - 35070
Alignment:
Q  12 gaatcactcgacttgtcaagaaaccatctttcaggtaaaatgccaacaagcttttcaaatttgacatttcttagttacatgaacttgtctttcaacaact 111  Q
    |||||||||||||||||||||||||||||||| |||| ||||||||| ||||||||||||||||||| ||||| | ||||||||||||||||||| ||||    
T  34908 gaatcactcgacttgtcaagaaaccatctttctggtagaatgccaacgagcttttcaaatttgacatctcttaataacatgaacttgtctttcaataact 35007  T
Q  112 tagaaggcaaaattccactaagcactcaactacaatcttttgatccctctgcatatgtcgggaa 175  Q
    |||| | |||||||||| |||||||||||||||||  ||||||| ||| | ||||||| |||||    
T  35008 tagacgacaaaattccagtaagcactcaactacaa-attttgattcctattcatatgtggggaa 35070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University