View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5071_low_28 (Length: 251)
Name: NF5071_low_28
Description: NF5071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5071_low_28 |
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Alignment Details
Target: chr7 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 43695572 - 43695329
Alignment:
| Q |
1 |
tctgctttaggaattaaaagctatgtggagaaagccgtagaagttgaaaagttgaaggacaatgtggctgcggtagagctggaatcggggaggctaaagg |
100 |
Q |
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| T |
43695572 |
tctgctttaggaattaaaagctatgtggagaaagccgtagaagttgaaaagttgaaggacaatgtggctgcggtagagctggaatcggggaggctaaagg |
43695473 |
T |
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| Q |
101 |
caaagctgattgctgctagggcaaatcttgacatggaaagaaatttgttgaaaatgaaaggattcgaagaaagagatttggattctgaattgggatgtgg |
200 |
Q |
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| T |
43695472 |
caaagctgattgctgctagggcaaatcttgacatggaaagaaatttgttgaaaacgaaaggattcgaagaaagagatttggattctgaattgggatgtgg |
43695373 |
T |
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| Q |
201 |
gagttggagaccatagacttatagctatgtatggattcatttca |
244 |
Q |
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| T |
43695372 |
gagttggagaccatagacttatagctatgtatggattcatttca |
43695329 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 124 - 195
Target Start/End: Original strand, 15827459 - 15827530
Alignment:
| Q |
124 |
aatcttgacatggaaagaaatttgttgaaaatgaaaggattcgaagaaagagatttggattctgaattggga |
195 |
Q |
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| T |
15827459 |
aatcttgacatggaaagagacttgttgaaatccaaaggtttcaaagaattagatttagattctgaattggga |
15827530 |
T |
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