View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5071_low_3 (Length: 580)
Name: NF5071_low_3
Description: NF5071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5071_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 371; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 91 - 566
Target Start/End: Original strand, 6729331 - 6729801
Alignment:
| Q |
91 |
tagtttaattggtttgagctaatagttaaagaaatcggatgtcgattcaaatttaaacgaatgagtaaatattaatctaatcaaacctaacaactgatca |
190 |
Q |
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| T |
6729331 |
tagtttaattgatttgagctaatagttaaagaaatcggatgtcgattcaaatttaaacgaatgagtaaatattaatctaatctaacctaacaact---ca |
6729427 |
T |
|
| Q |
191 |
ctattaatatttgcaacnnnnnnnngttaacaaataatctttaattgactataattattgtatcaataataatacgtacctgaaagaacttgttgaacat |
290 |
Q |
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| T |
6729428 |
ctattaatatttgcaacaaaaaagagttaacaaataatctttaattaactataattattgtatcaataataatacgtacctgaaagaacttgttgaacat |
6729527 |
T |
|
| Q |
291 |
agagaaagaaaagtgttaaaactgttgagagtggagagaagttagagaaatgatatagccataacctataggagagtaaaatccaaaagggggtgtggaa |
390 |
Q |
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| T |
6729528 |
agagaaagaaaagtgttaaaactcttgagagtggagagaagttagagaaatgatatagccataacctataggagagtaaaatccaaaagggggtgtggaa |
6729627 |
T |
|
| Q |
391 |
gtaagttaagtgatagaactagcaagatggtatcttttaacgtattttattnnnnnnnnnnnnnngagatagtactctgcatgctgcatatatgtttggt |
490 |
Q |
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| T |
6729628 |
gtaagttaagtgatagaactagcaagatggtatcttttaacgtattttatt--cacacacacagagagatagtactctgcatgctgcatatatgtttggt |
6729725 |
T |
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| Q |
491 |
acgttttcagaaagttgttaaagtaaattacttttgtacgtattcttacaaaggttctatccacatacatatatat |
566 |
Q |
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| T |
6729726 |
acgttttcagaaagttgttaaagtaaattacttttgtacgtattcttacaaaggttctatccacatacatttatat |
6729801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 135 - 171
Target Start/End: Complemental strand, 606851 - 606815
Alignment:
| Q |
135 |
attcaaatttaaacgaatgagtaaatattaatctaat |
171 |
Q |
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| T |
606851 |
attcaaatttaaatgaatgagtaaatattaatataat |
606815 |
T |
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