View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5071_low_31 (Length: 247)
Name: NF5071_low_31
Description: NF5071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5071_low_31 |
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Alignment Details
Target: chr2 (Bit Score: 168; Significance: 4e-90; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 10943328 - 10943096
Alignment:
| Q |
1 |
ctgtgtgtaaagctacgacctccgccacatcaacatcacacaggggagcaaaccaatccgttttggccagcacaagttcaccaacatcatacctaataca |
100 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| ||||| |||||||||||||||||||||||| |
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| T |
10943328 |
ctgtgtgtaaagctacgacctccaccacatcaacatcacacaggggagcaaactaatccgttttggccaacacaaattcaccaacatcatacctaataca |
10943229 |
T |
|
| Q |
101 |
cattccaaagcctaccctgtcaatcaacatagagaaggatgccaatgttacatttatacctgctagctgccggccttttccattccctcctctttacaac |
200 |
Q |
| |
|
|||||||||||||||| ||| || | |||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| |||||||||| ||| |
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| T |
10943228 |
cattccaaagcctaccttgttaagcgacatagagaaggatgccaatgttacatttacacccgctagctgccggccttttccatt--ctcctctttataac |
10943131 |
T |
|
| Q |
201 |
ttacaaatgcttgccgtgttgtgtttgtatttcct |
235 |
Q |
| |
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||||| ||||||| ||||||| ||||||||||||| |
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| T |
10943130 |
ttacagatgcttgtcgtgttgggtttgtatttcct |
10943096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 10949197 - 10948965
Alignment:
| Q |
1 |
ctgtgtgtaaagctacgacctccgccacatcaacatcacacaggggagcaaaccaatccgttttggccagcacaagttcaccaacatcatacctaataca |
100 |
Q |
| |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| ||||| |||||||||||||||||||||||| |
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| T |
10949197 |
ctgtgtgtaaagctacgacctccaccacatcaacatcacacaggggagcaaactaatccgttttggccaacacaaattcaccaacatcatacctaataca |
10949098 |
T |
|
| Q |
101 |
cattccaaagcctaccctgtcaatcaacatagagaaggatgccaatgttacatttatacctgctagctgccggccttttccattccctcctctttacaac |
200 |
Q |
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|||||||||||||||| ||| || | |||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| |||||||||| ||| |
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| T |
10949097 |
cattccaaagcctaccttgttaagcgacatagagaaggatgccaatgttacatttacacccgctagctgccggccttttccatt--ctcctctttataac |
10949000 |
T |
|
| Q |
201 |
ttacaaatgcttgccgtgttgtgtttgtatttcct |
235 |
Q |
| |
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||||| ||||||| ||||||| ||||||||||||| |
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|
| T |
10948999 |
ttacagatgcttgtcgtgttgggtttgtatttcct |
10948965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 18 - 116
Target Start/End: Original strand, 12555636 - 12555734
Alignment:
| Q |
18 |
acctccgccacatcaacatcacacaggggagcaaaccaatccgttttggccagcacaagttcaccaacatcatacctaatacacattccaaagcctacc |
116 |
Q |
| |
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|||||| ||||||| |||||||| || |||||||||||| ||||||| || || || | ||||||||||||| ||||||||||| || ||||||||| |
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| T |
12555636 |
acctcctccacatcgacatcacaaagaggagcaaaccaagccgttttagcaagaacgaactcaccaacatcatttctaatacacatccccaagcctacc |
12555734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 6860305 - 6860201
Alignment:
| Q |
1 |
ctgtgtgtaaagctacgacctccgccacatcaacatcacacaggggagcaaaccaatccgttttggccagcacaagttcaccaacatcatacctaataca |
100 |
Q |
| |
|
||||||||||| | ||| | ||| | |||||||||||||| |||||||||||| |||| ||||||||| || || ||||||| |||||| ||||| || |
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| T |
6860305 |
ctgtgtgtaaaccaacggcttcccctacatcaacatcacataggggagcaaactaatctgttttggcccgcctaaattcaccagcatcattactaatgca |
6860206 |
T |
|
| Q |
101 |
cattc |
105 |
Q |
| |
|
||||| |
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|
| T |
6860205 |
cattc |
6860201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 31957249 - 31957367
Alignment:
| Q |
1 |
ctgtgtgtaaagctacgacctccgcc-acatcaac--atcacacaggggagcaaaccaatccgttttggccagcacaagttcaccaacatcatacctaat |
97 |
Q |
| |
|
|||||| |||| ||| ||||||| || |||||||| |||||||||||||||||||||||| |||||||||| || || ||||||| |||||| |||||| |
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| T |
31957249 |
ctgtgtataaacctatgacctccccccacatcaacgcatcacacaggggagcaaaccaatctgttttggccaacataaattcaccagcatcattcctaat |
31957348 |
T |
|
| Q |
98 |
acacattccaaagcctacc |
116 |
Q |
| |
|
||||||||| ||||||||| |
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| T |
31957349 |
acacattcccaagcctacc |
31957367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 29 - 184
Target Start/End: Original strand, 24329521 - 24329678
Alignment:
| Q |
29 |
atcaacatcacacaggggagcaaaccaatccgttttggccagcacaagttcaccaacatcatacctaatacacattccaaagcctaccctgtcaatcaac |
128 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||| ||| | ||||||| |||||| |||||||| |||| || ||| | | || |
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| T |
24329521 |
atcaacatcacacagtggagcaaaccaatccgttttggccagcacaaattccctgacatcattcctaatgcacattcccaagcaatccatgtttagcgac |
24329620 |
T |
|
| Q |
129 |
atagagaaggatgc--caatgttacatttatacctgctagctgccggccttttccatt |
184 |
Q |
| |
|
||| || || || ||||||||||||||||||||| |||||||||| |||| |||| |
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|
| T |
24329621 |
gaagaaaaagacgcatcaatgttacatttatacctgccagctgccggcttttttcatt |
24329678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 51; Significance: 2e-20; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 4 - 183
Target Start/End: Complemental strand, 33315023 - 33314842
Alignment:
| Q |
4 |
tgtgtaaagctacgacctccgccacatcaacatcacacaggggagcaaaccaatccgttttggccagcacaagttcaccaacatcatacctaatacacat |
103 |
Q |
| |
|
|||||||| | ||||| ||| | |||||||||| ||| | ||||||||||||||| |||||||| |||||| ||||||| |||||| |||||| ||||| |
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| T |
33315023 |
tgtgtaaaccaacgacttccccgacatcaacattacagaagggagcaaaccaatctattttggcccgcacaaattcaccagcatcattcctaatccacat |
33314924 |
T |
|
| Q |
104 |
tccaaagcctaccctgtcaatcaacatagagaaggatgc--caatgttacatttatacctgctagctgccggccttttccat |
183 |
Q |
| |
|
||| || ||||||||| || | || ||| || ||| | ||||||||||||||||||||| | ||||||| |||||||| |
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| T |
33314923 |
tcccaatcctaccctgataaacgacgaagaaaatgatccatcaatgttacatttatacctgcccgttgccggctttttccat |
33314842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 15 - 64
Target Start/End: Complemental strand, 39839908 - 39839859
Alignment:
| Q |
15 |
acgacctccgccacatcaacatcacacaggggagcaaaccaatccgtttt |
64 |
Q |
| |
|
||||||||| ||||||||||||||||||| ||||||||| |||||||||| |
|
|
| T |
39839908 |
acgacctcccccacatcaacatcacacagaggagcaaacaaatccgtttt |
39839859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 27 - 104
Target Start/End: Complemental strand, 6969438 - 6969361
Alignment:
| Q |
27 |
acatcaacatcacacaggggagcaaaccaatccgttttggccagcacaagttcaccaacatcatacctaatacacatt |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||| |||||| ||||| | |||||| ||| || |||||| |
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|
| T |
6969438 |
acatcaacatcacacaggggagcaaaccaatccgttttagcccgcacaaattcactagcatcattcctgatgcacatt |
6969361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 31 - 120
Target Start/End: Original strand, 49407345 - 49407435
Alignment:
| Q |
31 |
caacatcacacaggggagcaaaccaatccgttttggccagcac-aagttcaccaacatcatacctaatacacattccaaagcctaccctgt |
120 |
Q |
| |
|
|||||||||||| |||||||| ||||||||||||||||| ||| || ||||||| |||||| |||| |||||||| ||||||||||||| |
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| T |
49407345 |
caacatcacacatgggagcaagccaatccgttttggccaacacgaatttcaccagcatcatttataatgcacattcccaagcctaccctgt |
49407435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 29 - 183
Target Start/End: Original strand, 1479515 - 1479671
Alignment:
| Q |
29 |
atcaacatcacacaggggagcaaaccaatccgttttggccagcacaagttcaccaacatcatacctaatacacattccaaagcctaccctgtcaatcaac |
128 |
Q |
| |
|
||||||||| || | ||||||||||||||||||||||| | |||||| ||||||| |||||| |||||| || ||||| || ||||| ||| || ||| |
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| T |
1479515 |
atcaacatcgcataagggagcaaaccaatccgttttggaccgcacaaattcaccagcatcattcctaatgcatattcccaatcctacaatgttaagcaat |
1479614 |
T |
|
| Q |
129 |
atagagaaggatgc--caatgttacatttatacctgctagctgccggccttttccat |
183 |
Q |
| |
|
||| || ||||| |||| |||||||||||||||| |||||||| |||||||| |
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|
| T |
1479615 |
gaagaaaatgatgcagcaatattacatttatacctgcccgctgccggttttttccat |
1479671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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