View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5071_low_34 (Length: 240)
Name: NF5071_low_34
Description: NF5071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5071_low_34 |
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Alignment Details
Target: chr7 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 6745783 - 6746004
Alignment:
| Q |
1 |
tcgataatatgaatataacttaagagtatatggtagaacataaataaactaaactacccttagcccaattataacaaaaacctcataacatattatctag |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
6745783 |
tcgataatatgaatataacttaagagtatatggtagaacataaataaactaaactacccttagcccaattataacaaaagcctcataacatattatctag |
6745882 |
T |
|
| Q |
101 |
catctcccctcaaactcacaatgcattaccatgaacaatcgagagtttgccaaacaagaaaacatactcaataatagatagataatataaaaccaaaacg |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6745883 |
catctcccctcaaactcacaatgcattaccatgaacaa-cgagagtttgccaaacaagaaaacatactcaataatagatagataatataaaaccaaaacg |
6745981 |
T |
|
| Q |
201 |
taagcaatcaaaccaaaccaact |
223 |
Q |
| |
|
||||||||||||||||||||||| |
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|
| T |
6745982 |
taagcaatcaaaccaaaccaact |
6746004 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 40 - 96
Target Start/End: Complemental strand, 2054516 - 2054460
Alignment:
| Q |
40 |
ataaataaactaaactacccttagcccaattataacaaaaacctcataacatattat |
96 |
Q |
| |
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|||||||||||||||||||||||||| ||||||||||||| | ||| ||||||||| |
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| T |
2054516 |
ataaataaactaaactacccttagccgaattataacaaaaggcccattacatattat |
2054460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 87 - 128
Target Start/End: Original strand, 27646398 - 27646439
Alignment:
| Q |
87 |
aacatattatctagcatctcccctcaaactcacaatgcatta |
128 |
Q |
| |
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||||||||||||| |||||||| | ||||||||||||||||| |
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| T |
27646398 |
aacatattatctaacatctccctttaaactcacaatgcatta |
27646439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 128
Target Start/End: Original strand, 34876515 - 34876603
Alignment:
| Q |
40 |
ataaataaactaaactacccttagcccaattataacaaaaacctcataacatattatctagcatctcccctcaaactcacaatgcatta |
128 |
Q |
| |
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||||||| | ||||||| | |||| ||||||||||||||| ||| | ||| ||||||| ||||||| ||||||||||||| ||||| |
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| T |
34876515 |
ataaatagattaaactatctttagtccaattataacaaaattctcttttcatgttatctaacatctccgttcaaactcacaatacatta |
34876603 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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