View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5071_low_37 (Length: 238)
Name: NF5071_low_37
Description: NF5071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5071_low_37 |
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| [»] chr3 (5 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 174; Significance: 9e-94; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 45 - 238
Target Start/End: Complemental strand, 4167352 - 4167159
Alignment:
| Q |
45 |
attgtaagtgacatacatcagttacgaaatagttggatatagcagacgatgtaatctacatgataccatggtctccaaattaaacatggaagaatcaaac |
144 |
Q |
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| T |
4167352 |
attgtaagtgacatacatcagttacgaattagttggatatagcagacgatgtaatctacatgataccatggtctccaaattaaacatggaaaaatcaaac |
4167253 |
T |
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| Q |
145 |
acatgacaaagaaatgttgaaatatagaaaatgaaacaaaatagaaacgataattcggtaagttgcaggaaaacaaataaatcttaaacattct |
238 |
Q |
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| T |
4167252 |
acgtgacgaagaaatgttgaaatatagaaaatgaaacaaaatagaaacgatatttcggtaagttgcaggaaaacaaataaatcttaaacattct |
4167159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 45 - 238
Target Start/End: Complemental strand, 4151586 - 4151390
Alignment:
| Q |
45 |
attgtaagtgacatacatcagtt---acgaaatagttggatatagcagacgatgtaatctacatgataccatggtctccaaattaaacatggaagaatca |
141 |
Q |
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| T |
4151586 |
attgtaagtgacagacatcagtttatacgaaatagttggatatagcagacgatgtaatctacatgataccatggtctccaaattaaacatggaaaaatca |
4151487 |
T |
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| Q |
142 |
aacacatgacaaagaaatgttgaaatatagaaaatgaaacaaaatagaaacgataattcggtaagttgcaggaaaacaaataaatcttaaacattct |
238 |
Q |
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| T |
4151486 |
aacacgtgacgaagaaatgttgaaatatagaaaatgaaacaaaatagaaacgatatttcggtaagttgcaggaaaacaaataaatcttaaacattct |
4151390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 167 - 235
Target Start/End: Complemental strand, 7021244 - 7021175
Alignment:
| Q |
167 |
tatagaaaatgaaacaaaatagaaacgataattcggtaagttgcaggaaaacaaataaa-tcttaaacat |
235 |
Q |
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| T |
7021244 |
tatagaaaatgaaacaaaatagaaacgataattcaataagttgcaggaaaataaataaattcttaaacat |
7021175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 71 - 114
Target Start/End: Complemental strand, 7021325 - 7021282
Alignment:
| Q |
71 |
aaatagttggatatagcagacgatgtaatctacatgataccatg |
114 |
Q |
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| T |
7021325 |
aaatagttggatacagcagacgatgtaatctatatgataccatg |
7021282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 47
Target Start/End: Complemental strand, 4167504 - 4167474
Alignment:
| Q |
17 |
acttgatataaaatgaaattcatcgagcatt |
47 |
Q |
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| T |
4167504 |
acttgatataaaatgaaattcatcgagcatt |
4167474 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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