View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5071_low_39 (Length: 237)
Name: NF5071_low_39
Description: NF5071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5071_low_39 |
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Alignment Details
Target: chr7 (Bit Score: 217; Significance: 1e-119; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 43695579 - 43695799
Alignment:
| Q |
1 |
atggggatcaagccaagccatatcaaatttaaacttctcaagttcctcccataaaacttgaagatccttacaagcctggtcattcatgtctctcactttt |
100 |
Q |
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| T |
43695579 |
atggggatcaagccaagccatatcaaatttaaacttctcaagttcctcccataaaacttgaagatccttacaagcctggtcattcatgtctctcactttt |
43695678 |
T |
|
| Q |
101 |
ctagtcgtaaggaaataaataactctccccaatgcagcgaatgccaaatcagtaaacttgcgacttctcttcgatgggcgctcactgagtgaaggattat |
200 |
Q |
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| T |
43695679 |
ctagtcttaaggaaataaataactctccccaatgcagcgaatgccaaatcagtaaacttgcgacttctcttcgatgggcgctcactgagtgaaggattat |
43695778 |
T |
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| Q |
201 |
cagaatatgtttcctccattt |
221 |
Q |
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||||||||||||||||||||| |
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| T |
43695779 |
cagaatatgtttcctccattt |
43695799 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 11 - 169
Target Start/End: Original strand, 43709482 - 43709640
Alignment:
| Q |
11 |
agccaagccatatcaaatttaaacttctcaagttcctcccataaaacttgaagatccttacaagcctggtcattcatgtctctcacttttctagtcgtaa |
110 |
Q |
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| T |
43709482 |
agccaagccagatcaaatccaaatatctcaagttcctcccataaaatttgaagatccttgcaagcttgatcattcatgtctttcgcctttctagtcttaa |
43709581 |
T |
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| Q |
111 |
ggaaataaataactctccccaatgcagcgaatgccaaatcagtaaacttgcgacttctc |
169 |
Q |
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| T |
43709582 |
ggaaataaagaactctgcccaaagcggtgaaagcccattcagtgaacctgcgacttctc |
43709640 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 22 - 172
Target Start/End: Original strand, 43707769 - 43707920
Alignment:
| Q |
22 |
atcaaatttaaacttctcaagttcctcccataaaacttgaagatccttacaagcctggtcattcatgtctctcactt-ttctagtcgtaaggaaataaat |
120 |
Q |
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||||||| |||| |||||||||||||| ||||||||| | ||||||||||| ||||||||||| ||| ||||| || ||||| | | |||||||| |
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| T |
43707769 |
atcaaatctaaatttctcaagttcctcgtataaaactttagtatccttacaaggttggtcattcatatctttcactcgttttagtcttgggaaaataaat |
43707868 |
T |
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| Q |
121 |
aactctccccaatgcagcgaatgccaaatcagtaaacttgcgacttctcttc |
172 |
Q |
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| T |
43707869 |
aactctccccaatgtggcgaatgccaagtcagtaaacttgcaacttatcttc |
43707920 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 39 - 132
Target Start/End: Original strand, 43696407 - 43696500
Alignment:
| Q |
39 |
caagttcctcccataaaacttgaagatccttacaagcctggtcattcatgtctctcacttttctagtcgtaaggaaataaataactctccccaa |
132 |
Q |
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||||||||||||| |||| |||||||||||||||||| |||||||| | | |||| || |||||| |||||||||||| |||||| ||||| |
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| T |
43696407 |
caagttcctcccagaaaatttgaagatccttacaagctaaatcattcatatatttcaccttcctagtcttaaggaaataaagaactctgcccaa |
43696500 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 137
Target Start/End: Original strand, 43691274 - 43691332
Alignment:
| Q |
79 |
gtcattcatgtctctcacttttctagtcgtaaggaaataaataactctccccaatgcag |
137 |
Q |
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| T |
43691274 |
gtcattcatatctttcccttttctagtcttaaggaaataaagaactctgcccaaagcag |
43691332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 72; Significance: 7e-33; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 11 - 138
Target Start/End: Complemental strand, 15827319 - 15827192
Alignment:
| Q |
11 |
agccaagccatatcaaatttaaacttctcaagttcctcccataaaacttgaagatccttacaagcctggtcattcatgtctctcacttttctagtcgtaa |
110 |
Q |
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||||||| |||||||||||||| ||| | ||||||||||||||||||||||||||||||||||| || ||||||||||||||| ||||||||||| ||| |
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| T |
15827319 |
agccaagtaatatcaaatttaaatttcgctagttcctcccataaaacttgaagatccttacaagcttgttcattcatgtctctcgcttttctagtcttaa |
15827220 |
T |
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| Q |
111 |
ggaaataaataactctccccaatgcagc |
138 |
Q |
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||||||| | |||| | || |||||||| |
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| T |
15827219 |
ggaaatacagaactttacctaatgcagc |
15827192 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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