View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5071_low_4 (Length: 559)
Name: NF5071_low_4
Description: NF5071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5071_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 485; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 485; E-Value: 0
Query Start/End: Original strand, 19 - 551
Target Start/End: Complemental strand, 22363115 - 22362583
Alignment:
| Q |
19 |
aaattttcaacttggatgcaggggtagcaaagttgggattcatatatggagatgaactagaggaaaggagaataaagacgggggatttgtatgtaattcc |
118 |
Q |
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| T |
22363115 |
aaattttcaacttggatgcaggggtagcaaagttgggattcatatatggagatgaactagaggaaaggagaataaagacaggggatttgtatgtaattcc |
22363016 |
T |
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| Q |
119 |
agcaggtactgtattttatttagtgaatataggtgaaggtcagagacttcatgtcatatgcagttttgacccctctacaagtttaggtgatacttttcag |
218 |
Q |
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| T |
22363015 |
agcaggtactgtattttatttagtgaatataggtgaaggtcagagacttcatgtcatatgcagttttgacccctctacaagtttaggtgatacttttcag |
22362916 |
T |
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| Q |
219 |
gtacatatatgcatctataatttcacatgtttcacttacatattatccactttatgttaacttgttaccatgtttttctaacattcttcaattttatgta |
318 |
Q |
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| T |
22362915 |
gtacatatatgcttctataatttcacatgtttcactcacatattatccactttatgttatcttgttaccatgtttttctaacattcttcaattttatgta |
22362816 |
T |
|
| Q |
319 |
gcctttctatattggtggaggagataatcaacaatctgtgctcgctggattcggaccgacaattcttgaaactgcatttaatgtaagctattgcctaatg |
418 |
Q |
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| T |
22362815 |
gcctttctatattggtggaggagataatcaacaatctgtgcttgctggattcggaccgacaattcttgaaactgcatttaatgtaagctattgcctaatg |
22362716 |
T |
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| Q |
419 |
cagcaatattacaatatatcaagtggatctaaattgtgtattattattaattatcacttataggaatcaagagcaatgatagagagaattttcaccaaga |
518 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||| ||||||| |||||||||||||||||| ||| |||||||||||| |||||||||| |
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| T |
22362715 |
tagcaatattacaatatatcaagtgggtctaaattgtgtattattgttaattaccacttataggaatcaagaacaaagatagagagaatcttcaccaaga |
22362616 |
T |
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| Q |
519 |
aacaagatggtccaattgtgttcattgatgatg |
551 |
Q |
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| T |
22362615 |
aacaagatggtccaattgtgttcattgatgatg |
22362583 |
T |
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