View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5071_low_40 (Length: 237)
Name: NF5071_low_40
Description: NF5071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5071_low_40 |
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Alignment Details
Target: chr3 (Bit Score: 180; Significance: 2e-97; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 3 - 221
Target Start/End: Complemental strand, 3629187 - 3628975
Alignment:
| Q |
3 |
cttacaacattatcaaaatcaactccaatataaccgtttctgctaaatgcggagaagataacgctaaagataacggagacagttattgttatttcatcga |
102 |
Q |
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| T |
3629187 |
cttacaacattatcaaaatcaactccaatataaccgtttctgctaaatgcggagaagataacgctaaagataacggagacagttattattatttcatcga |
3629088 |
T |
|
| Q |
103 |
tgacgtggcaaaatgccttaacgaaggtagttttgatgtcaatacgaatacatattcgatctcaacgagaaagaagagnnnnnnntcgaaatcgaattcg |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
3629087 |
tgacgtggcaaaatgccttaacgaaggtagttttgatgtcaatacgaatacatattcgatctcaacgagaaagaagagaaaa------aaatcgaattcg |
3628994 |
T |
|
| Q |
203 |
aatgagaaagaggaaatgt |
221 |
Q |
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||||||||||||||||||| |
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| T |
3628993 |
aatgagaaagaggaaatgt |
3628975 |
T |
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