View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5071_low_44 (Length: 231)
Name: NF5071_low_44
Description: NF5071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5071_low_44 |
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Alignment Details
Target: chr3 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 15 - 207
Target Start/End: Original strand, 19247716 - 19247908
Alignment:
| Q |
15 |
cagagagaaaagagagtttaaaaggttttgttcgatgttgagaaattgtattgaataatggttatgatacaagatattgatatgtgatatgagttacata |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19247716 |
cagagagaaaagagagtttaaaaggttttgttcgatgttgagaaattgtattgaataatggttatgatacaagatattgatatgtgatatgagttacata |
19247815 |
T |
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| Q |
115 |
tcaattgaatacaaaaattaagtacttagaggctaggtgaagttacttgatctgcaagtcactaaccaaccaactaactaactaacaaacata |
207 |
Q |
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| T |
19247816 |
tcaattgaatacaaaaattaagtacttagaggctaggtgaagttacttgatctgcaagtcactaaccaaccaaccaactaactaacaaacata |
19247908 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 60 - 104
Target Start/End: Complemental strand, 25627630 - 25627586
Alignment:
| Q |
60 |
ttgtattgaataatggttatgatacaagatattgatatgtgatat |
104 |
Q |
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| T |
25627630 |
ttgtattgaataatagttatgattcaagatattgatatgagatat |
25627586 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 1e-21; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 120 - 216
Target Start/End: Complemental strand, 53611355 - 53611259
Alignment:
| Q |
120 |
tgaatacaaaaattaagtacttagaggctaggtgaagttacttgatctgcaagtcactaaccaaccaactaactaactaacaaacatagttggattt |
216 |
Q |
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| T |
53611355 |
tgaacacaaaaactaagtactcataggctaagtggagttacttgcactacaagtcactaaccaactaactaactaaccaacaaacatagttggattt |
53611259 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 58 - 163
Target Start/End: Original strand, 29298500 - 29298603
Alignment:
| Q |
58 |
aattgtattgaataatggttatgatacaagatattgatatgt--gatatgagttacatatcaattgaatacaaaaattaagtacttagaggctaggtgaa |
155 |
Q |
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| T |
29298500 |
aattgtattgcataatggttatgatacaatatattgatatgtaatatatgagtt--atatcaattgaatacaaaa--caagtacttataggctaagttga |
29298595 |
T |
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| Q |
156 |
gttacttg |
163 |
Q |
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|||||||| |
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| T |
29298596 |
gttacttg |
29298603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 58 - 130
Target Start/End: Complemental strand, 22054843 - 22054773
Alignment:
| Q |
58 |
aattgtattgaataatggttatgatacaagatattgatatgtgatatgagttacatatcaattgaatacaaaa |
130 |
Q |
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| T |
22054843 |
aattgtattgcatagtggttatgatacaagatattaatgtgtgatatgaatt--ctatcaaatgaatacaaaa |
22054773 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 194
Target Start/End: Original strand, 37749375 - 37749457
Alignment:
| Q |
112 |
atatcaattgaatacaaaaattaagtacttagaggctaggtgaagttacttgatctgcaagtcactaaccaaccaactaacta |
194 |
Q |
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||||||| ||||||||||| ||||||||||| |||||| || ||| ||||| || |||| ||||||| ||| ||||||||| |
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| T |
37749375 |
atatcaactgaatacaaaagttaagtacttataggctaagttgagtaacttgcactacaagccactaacaaactaactaacta |
37749457 |
T |
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