View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5071_low_46 (Length: 224)
Name: NF5071_low_46
Description: NF5071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5071_low_46 |
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Alignment Details
Target: chr4 (Bit Score: 173; Significance: 3e-93; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 20 - 196
Target Start/End: Original strand, 24246053 - 24246229
Alignment:
| Q |
20 |
aacctggcataaattccattgaattactttctgtgattaaacaatattgtgaaaacacttatcaaatacaacatgtaaccatacaaattgagtaaggtta |
119 |
Q |
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| T |
24246053 |
aacctggcataaattccattgaattactttctgtgattaaacaatattgtgaaaacacttatcaaatacaacatgtaaccatacaaattgagtaaggtta |
24246152 |
T |
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| Q |
120 |
tattcttttctgctccattattctcgctttattaattatttgtgtgacgcatactcatatagattcacaagacgtgc |
196 |
Q |
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| T |
24246153 |
tattcttttctgctccattattctcgctttattaattatttgtgtgacccatactcatatagattcacaagacgtgc |
24246229 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 156 - 196
Target Start/End: Original strand, 24246414 - 24246454
Alignment:
| Q |
156 |
tatttgtgtgacgcatactcatatagattcacaagacgtgc |
196 |
Q |
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| T |
24246414 |
tatttgtgtgacgcatactcatatagattcacaagatgtgc |
24246454 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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