View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5071_low_47 (Length: 222)
Name: NF5071_low_47
Description: NF5071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5071_low_47 |
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Alignment Details
Target: chr2 (Bit Score: 181; Significance: 6e-98; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 33807316 - 33807536
Alignment:
| Q |
1 |
tctatttagaatcttt-aaaaagtgttctaaaatactcgttatcaagacctttaaatttataatcagagttgtagttttatgcgcatcgactaattgtat |
99 |
Q |
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|||||||||||||||| ||||| ||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
33807316 |
tctatttagaatcttttaaaaaatgttctaaaatactcgtcagcaagacctttaaatttataatcagagttgtagttttatgtgcatcgactaattgtat |
33807415 |
T |
|
| Q |
100 |
gtgtggattaaattacaagacagttcacatcacccacatcaatgacttatggccaattgagtttgtaattgtcgcactcatttaattaatcttggatctt |
199 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
33807416 |
gtgtggactaaattacaagacagttcacatcacccacatcaatgacttatggtcaattgagtttgtaattgtcgcactcatttaatttatcttggatctt |
33807515 |
T |
|
| Q |
200 |
tactttcttatggctgttgat |
220 |
Q |
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| ||||||||||||||||||| |
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| T |
33807516 |
ttctttcttatggctgttgat |
33807536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 33802834 - 33803054
Alignment:
| Q |
1 |
tctatttagaatcttt-aaaaagtgttctaaaatactcgttatcaagacctttaaatttataatcagagttgtagttttatgcgcatcgactaattgtat |
99 |
Q |
| |
|
||||| |||||||||| ||||| ||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
33802834 |
tctatatagaatcttttaaaaaatgttctaaaatactcgtcagcaagacctttaaatttataatcagagttgtagttttatgtgcatcgactaattgtat |
33802933 |
T |
|
| Q |
100 |
gtgtggattaaattacaagacagttcacatcacccacatcaatgacttatggccaattgagtttgtaattgtcgcactcatttaattaatcttggatctt |
199 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
33802934 |
gtgtggactaaattacaagacagttcacatcacccacatcaatgacttatggtcaattgagtttgtaattgtcgcactcatttaatttatcttggatctt |
33803033 |
T |
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| Q |
200 |
tactttcttatggctgttgat |
220 |
Q |
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| ||||||||||||||||||| |
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| T |
33803034 |
ttctttcttatggctgttgat |
33803054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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