View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5071_low_6 (Length: 453)
Name: NF5071_low_6
Description: NF5071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5071_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 275; Significance: 1e-153; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 112 - 418
Target Start/End: Complemental strand, 26843178 - 26842872
Alignment:
| Q |
112 |
aaaaggtataacaaaaaacatgtcaaaatcaataagttgaaagtatatatgtatcgtagagaatctcatctaacataacttgagcaaattttttaacatc |
211 |
Q |
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| T |
26843178 |
aaaagttataacaaaaaacatgtcaaaatcaataagttgaaagtatatatgtatcgtagagaatctcatctaacataacttgagcaaattttttaacatc |
26843079 |
T |
|
| Q |
212 |
tagatcaggtattttgatctacttgtattcagacatacatatatatgcttctccaaatctgccgtatagaaacatacaagagtatttggcaagaacatgc |
311 |
Q |
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| T |
26843078 |
tagaacaggtattttgatctacttttattcagacatacatatatatgcttcttcaaatctgccgtatagaaacaaataagagtatttggcaagaacatgc |
26842979 |
T |
|
| Q |
312 |
acccaattagtgacagtaaattgttctacaaataaaataagtgctttcagaatagtagttcaagggcgtatatatgatacattcaatacataaacatgta |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| || |
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| T |
26842978 |
acccaattagtgacagtaaattgttctacaaataaaataagtgctttcagaatagtagttcaagggcgtatatatgatactttcaatacataaacatata |
26842879 |
T |
|
| Q |
412 |
catgtaa |
418 |
Q |
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||||||| |
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| T |
26842878 |
catgtaa |
26842872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 57 - 114
Target Start/End: Complemental strand, 26843381 - 26843324
Alignment:
| Q |
57 |
ccgaagcatggtttgcggatcaagaaatcagccaaaaaatatagaatctggtcctaaa |
114 |
Q |
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| T |
26843381 |
ccgaagcatggtttgcggatcaagaaatcagccaaaaaatatagaatccggtcctaaa |
26843324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 55 - 114
Target Start/End: Original strand, 8180910 - 8180969
Alignment:
| Q |
55 |
atccgaagcatggtttgcggatcaagaaatcagccaaaaaatatagaatctggtcctaaa |
114 |
Q |
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| T |
8180910 |
atccgaagcatggtctgcagatcaagaaatcagccagaaaatatagaatccggtcctaaa |
8180969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 7 - 50
Target Start/End: Original strand, 27536949 - 27536992
Alignment:
| Q |
7 |
ctgcaataatatggacttaatttgaagtggggaccggaacctga |
50 |
Q |
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| T |
27536949 |
ctgcaaaactatggacttaatttgaagtggggacaggaacctga |
27536992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 7 - 51
Target Start/End: Original strand, 15643476 - 15643520
Alignment:
| Q |
7 |
ctgcaataatatggacttaatttgaagtggggaccggaacctgac |
51 |
Q |
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| T |
15643476 |
ctgcaaaactatggacttaatttgaagtggggacatgaacctgac |
15643520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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