View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5072-Insertion-11 (Length: 337)
Name: NF5072-Insertion-11
Description: NF5072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5072-Insertion-11 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 295; Significance: 1e-166; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 7 - 337
Target Start/End: Original strand, 18215485 - 18215814
Alignment:
| Q |
7 |
agaagaagccgggaattggagtactgcaatacggagatgcaacatgcagatatatttgctaaaccatcgaagaaggcaaggtttgatgaactgaaagaac |
106 |
Q |
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| T |
18215485 |
agaagaagccggaaat-ggagcactgcaatacggagatgcaacatgcagatatatttgctaaaccatcgaagaaggcaaggtttgatgaactgaaagaac |
18215583 |
T |
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| Q |
107 |
ttatggggatgagaagactaacaaatacgaattatgaggagtgtttcgatttaataaaatcaataattcataattgttaatagtaacttgtgctacaagt |
206 |
Q |
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| T |
18215584 |
ttatgaggatgagaagactaacaaatacgaattatgaggagtgtttcgatttaataaaatcaataattcataattgttaatagtaacttgtgttacaagt |
18215683 |
T |
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| Q |
207 |
tagcttagaaaggtttttagtttgttgagaaagcattgtgcaagtgtatatgaacaaaacacttcaatgcaaaatattgcaatctctcttcaaattgaat |
306 |
Q |
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| T |
18215684 |
tagcttagaaaggtttttagtttgttgagaaagcattgtgcaagtgtatatgaacaaaacacttcaatgcaaaatattgcaatctctgttcaaattgaat |
18215783 |
T |
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| Q |
307 |
aaacaaagaaaacttttacattcaatttctc |
337 |
Q |
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| T |
18215784 |
aaacaaagaaagcatttacattcaatttctc |
18215814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 67 - 185
Target Start/End: Complemental strand, 12053257 - 12053139
Alignment:
| Q |
67 |
aaaccatcgaagaaggcaaggtttgatgaactgaaagaacttatggggatgagaagactaacaaatacgaattatgaggagtgtttcgatttaat-aaaa |
165 |
Q |
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| T |
12053257 |
aaaccattgaagaagacaaggtttgatgatctaaaagagcttatgtgggtgaggaaactaacaaatatgaattatgaggagtg-atggatttgataaaaa |
12053159 |
T |
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| Q |
166 |
tcaataattcataattgtta |
185 |
Q |
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| T |
12053158 |
tccataattcatagttgtta |
12053139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 22 - 118
Target Start/End: Complemental strand, 14806636 - 14806540
Alignment:
| Q |
22 |
ttggagtactgcaatacggagatgcaacatgcagatatatttgctaaaccatcgaagaaggcaaggtttgatgaactgaaagaacttatggggatga |
118 |
Q |
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| T |
14806636 |
ttggagtattgcaatacagaggtgcaacttgcaaacattttcaccaaaccattgaagaaggcaatgtttgatgaactgaaaaagcttatggtgatga |
14806540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 96
Target Start/End: Original strand, 27355468 - 27355497
Alignment:
| Q |
67 |
aaaccatcgaagaaggcaaggtttgatgaa |
96 |
Q |
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| T |
27355468 |
aaaccatcgaagaaggcaaggtttgatgaa |
27355497 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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