View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5072-Insertion-2 (Length: 908)

Name: NF5072-Insertion-2
Description: NF5072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5072-Insertion-2
NF5072-Insertion-2
[»] chr4 (6 HSPs)
chr4 (8-902)||(40044534-40045429)
chr4 (393-902)||(40035616-40036121)
chr4 (223-304)||(40035452-40035533)
chr4 (398-456)||(26394222-26394280)
chr4 (802-856)||(20155101-20155155)
chr4 (267-304)||(26394374-26394411)
[»] chr1 (3 HSPs)
chr1 (231-304)||(7594904-7594977)
chr1 (614-712)||(7594397-7594495)
chr1 (417-483)||(7594717-7594783)
[»] chr8 (4 HSPs)
chr8 (231-303)||(41943691-41943763)
chr8 (628-707)||(25865606-25865685)
chr8 (231-301)||(25865447-25865517)
chr8 (231-298)||(26591915-26591982)
[»] chr7 (4 HSPs)
chr7 (620-708)||(7803850-7803938)
chr7 (810-902)||(7813441-7813533)
chr7 (631-699)||(7813552-7813620)
chr7 (812-902)||(7803751-7803841)
[»] chr2 (1 HSPs)
chr2 (231-305)||(34571783-34571857)
[»] chr5 (2 HSPs)
chr5 (231-295)||(12531239-12531303)
chr5 (231-295)||(12547316-12547380)


Alignment Details
Target: chr4 (Bit Score: 876; Significance: 0; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 876; E-Value: 0
Query Start/End: Original strand, 8 - 902
Target Start/End: Original strand, 40044534 - 40045429
Alignment:
Q  8 catgtttgattatggaggagaagaaaccaaaaaattgtatttttgttacattcatccatgttttaggaaaaagaagtagcaattgaagctcagttaggct 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40044534 catgtttgattatggaggagaagaaaccaaaaaattgtatttttgttacattcatccatgttttaggaaaaagaagtagcaattgaagctcagttaggct 40044633  T
Q  108 aatttatcttatttttaggttgatttgcttgtgattatttgttgaagattaagttttagttattaggttaagctatgattttaggggaaattgttctgat 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40044634 aatttatcttatttttaggttgatttgcttgtgattatttgttgaagattaagttttagttattaggttaagctatgattttaggggaaattgttctgat 40044733  T
Q  208 tatcttgtttgggttttatgtagatggcacgtaccaagcaaactgctcgtaagtcaaccggtggaaaggcaccaaggaagcaacttgcaaccaaggtttg 307  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  40044734 tatcttgtttgggttttaagtagatggcacgtaccaagcaaactgctcgtaagtcaacaggtggaaaggcaccaaggaagcaacttgcaaccaaggtttg 40044833  T
Q  308 cttttagttgattatcattagaaagacaatgattttaatctgtattaaggctgttgaatcttatgttaatgttatcttgtttttctgttacctttaggct 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40044834 cttttagttgattatcattagaaagacaatgattttaatctgtattaaggctgttgaatcttatgttaatgttatcttgtttttctgttacctttaggct 40044933  T
Q  408 gcacgtaagtctgcaccaactactggtggagttaagaagccacatcgttaccgcccaggaactgttgctcttcggtgagtttctgttgaaaattttcttt 507  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40044934 gcacgtaagtctgcaccaactactggtggagttaagaagccacatcgttaccgcccaggaactgttgctcttcggtgagtttctgttgaaaattttcttt 40045033  T
Q  508 tagggttgtaattcaatgtgttctgttcagttttgatttcaatttgctttaattgaattgaattggtttggtttctaat-atttgtcatttggattggta 606  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  40045034 tagggttgtaattcaatgtgttctgttcagttttgatttcaatttgctttaattgaattgaattggtttggtttctaataatttgtcatttggattggta 40045133  T
Q  607 ttttaaaacagtgagattaggaagtaccagaagagtactgagctcttgatcaggaagctccccttccagaggttggttcgtgaaattgctcaggacttca 706  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40045134 ttttaaaacagtgagattaggaagtaccagaagagtactgagctcttgatcaggaagctccccttccagaggttggttcgtgaaattgctcaggacttca 40045233  T
Q  707 aggtaatgtgtagttaaagtgtgagatattgtgtatttgtgttcacaatcagtttagttaaggttgtggtttctaataattttggtttcggttgcagact 806  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40045234 aggtaatgtgtagttaaagtgtgagatattgtgtatttgtgttcacaatcagtttagttaaggttgtggtttctaataattttggtttcggttgcagact 40045333  T
Q  807 gaccttcgtttccagagtcatgctgtgcttgcattgcaagaggctgctgaggcatatcttggtggtctctttgaggacactaacttgtgcgctatc 902  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  40045334 gaccttcgtttccagagtcatgctgtgcttgcattgcaagaggctgctgaggcatatcttgttggtctctttgaggacactaacttgtgcgctatc 40045429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 174; E-Value: 4e-93
Query Start/End: Original strand, 393 - 902
Target Start/End: Original strand, 40035616 - 40036121
Alignment:
Q  393 tgttacctttaggctgcacgtaagtctgcaccaactactggtggagttaagaagccacatcgttaccgcccaggaactgttgctcttcggtgagtttctg 492  Q
    |||| ||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||||| ||    
T  40035616 tgtttcctttaggctgcacgtaagtctgcacccactactggtggggttaagaaaccacatcgttaccgccctggaactgttgctcttcggtgagtttttg 40035715  T
Q  493 ttgaaaattttcttttagggttgtaattcaatgtgttctgttcagttttgatttcaatttgctttaattgaattgaattggtttggtttctaatatttgt 592  Q
     ||||| |||||| | |||||| | |||||||||||||||||    ||||       || |   |||||| ||||    ||||  |||||||||  ||||    
T  40035716 gtgaaa-ttttctct-agggttatgattcaatgtgttctgtt----tttg-------ttag---taattgtattg----ggttctgtttctaatggttgt 40035795  T
Q  593 catttggattggtattttaaaacagtgagattaggaagtaccagaagagtactgagctcttgatcaggaagctccccttccagaggttggttcgtgaaat 692  Q
     || || |||| | ||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  40035796 tatatgaattgttgttttaaa-cagtgagattaggaagtatcagaagagtactgagctcttgatcaggaagctcccattccagaggttggttcgtgaaat 40035894  T
Q  693 tgctcaggacttcaaggtaatgtgtagttaaag-tgtgagatattgtgtatttgtgttcacaatcagtttagttaa-------gg------ttgtggttt 778  Q
    |||||||||||||||||||||||||| ||   | | || ||  |||||  ||||| |||| |||||| ||||||||       ||      | || ||||    
T  40035895 tgctcaggacttcaaggtaatgtgtaattgctgatatgcgaacttgtgcttttgttttcataatcagcttagttaatagttttggtagttttggttgttt 40035994  T
Q  779 ctaataattttggtttcggt---tgcagactgaccttcgtttccagagtcatgctgtgcttgcattgcaagaggctgctgaggcatatcttggtggtctc 875  Q
    || ||||||||||||   ||   ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| |||||||    
T  40035995 ctgataattttggttcttgtttttgcagactgaccttcgtttccagagccatgctgtgcttgcattgcaagaggctgctgaagcatatcttgttggtctc 40036094  T
Q  876 tttgaggacactaacttgtgcgctatc 902  Q
    |||||||||||||||||||| ||||||    
T  40036095 tttgaggacactaacttgtgtgctatc 40036121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 223 - 304
Target Start/End: Original strand, 40035452 - 40035533
Alignment:
Q  223 ttatgtagatggcacgtaccaagcaaactgctcgtaagtcaaccggtggaaaggcaccaaggaagcaacttgcaaccaaggt 304  Q
    |||||||||||||||||||||||||||||||||||||||| || |||||||||||||| ||||| | |||||||||||||||    
T  40035452 ttatgtagatggcacgtaccaagcaaactgctcgtaagtctactggtggaaaggcacctaggaaaccacttgcaaccaaggt 40035533  T

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Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 398 - 456
Target Start/End: Complemental strand, 26394280 - 26394222
Alignment:
Q  398 cctttaggctgcacgtaagtctgcaccaactactggtggagttaagaagccacatcgtt 456  Q
    ||||||||||||||||||||||||||| ||||||||| |||||||||| |||| |||||    
T  26394280 cctttaggctgcacgtaagtctgcacccactactggtagagttaagaaaccacgtcgtt 26394222  T

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Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 802 - 856
Target Start/End: Complemental strand, 20155155 - 20155101
Alignment:
Q  802 agactgaccttcgtttccagagtcatgctgtgcttgcattgcaagaggctgctga 856  Q
    ||||||||||||| ||||| ||||||| |||||||||||| ||||||||||||||    
T  20155155 agactgaccttcgcttccaaagtcatgatgtgcttgcatttcaagaggctgctga 20155101  T

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Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 267 - 304
Target Start/End: Complemental strand, 26394411 - 26394374
Alignment:
Q  267 ggtggaaaggcaccaaggaagcaacttgcaaccaaggt 304  Q
    |||||||||||||| |||||||||||||||||||||||    
T  26394411 ggtggaaaggcacctaggaagcaacttgcaaccaaggt 26394374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000005; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 231 - 304
Target Start/End: Complemental strand, 7594977 - 7594904
Alignment:
Q  231 atggcacgtaccaagcaaactgctcgtaagtcaaccggtggaaaggcaccaaggaagcaacttgcaaccaaggt 304  Q
    ||||| |||||||||||||| ||||| ||||| |||||||| ||||| ||||||||||| || || ||||||||    
T  7594977 atggctcgtaccaagcaaaccgctcgcaagtctaccggtggtaaggctccaaggaagcagctcgccaccaaggt 7594904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 614 - 712
Target Start/End: Complemental strand, 7594495 - 7594397
Alignment:
Q  614 acagtgagattaggaagtaccagaagagtactgagctcttgatcaggaagctccccttccagaggttggttcgtgaaattgctcaggacttcaaggtaa 712  Q
    ||||||||||  | ||||||||||||||||||||||| |||||| | ||||| || || ||| |  | || |||||||||||||| || ||||||||||    
T  7594495 acagtgagatccgtaagtaccagaagagtactgagcttttgatccgcaagcttccatttcagcgtcttgtccgtgaaattgctcaagatttcaaggtaa 7594397  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 417 - 483
Target Start/End: Complemental strand, 7594783 - 7594717
Alignment:
Q  417 tctgcaccaactactggtggagttaagaagccacatcgttaccgcccaggaactgttgctcttcggt 483  Q
    ||||| || ||||| |||||||| ||||| || || ||||||||||| ||||| |||||||||||||    
T  7594783 tctgctcctactacaggtggagtaaagaaacctcaccgttaccgccctggaaccgttgctcttcggt 7594717  T

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Target: chr8 (Bit Score: 37; Significance: 0.00000000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 231 - 303
Target Start/End: Original strand, 41943691 - 41943763
Alignment:
Q  231 atggcacgtaccaagcaaactgctcgtaagtcaaccggtggaaaggcaccaaggaagcaacttgcaaccaagg 303  Q
    ||||| ||||| |||||||||||||| || || |||||||| ||||| |||||||||||||| || |||||||    
T  41943691 atggctcgtactaagcaaactgctcgcaaatccaccggtggcaaggctccaaggaagcaactggccaccaagg 41943763  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 628 - 707
Target Start/End: Original strand, 25865606 - 25865685
Alignment:
Q  628 aagtaccagaagagtactgagctcttgatcaggaagctccccttccagaggttggttcgtgaaattgctcaggacttcaa 707  Q
    ||||| ||||||||||||||||| |||||| | ||||| || |||||| |  | |||||||||||||||||||| |||||    
T  25865606 aagtatcagaagagtactgagcttttgatccgtaagcttccattccagcgtcttgttcgtgaaattgctcaggatttcaa 25865685  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 231 - 301
Target Start/End: Original strand, 25865447 - 25865517
Alignment:
Q  231 atggcacgtaccaagcaaactgctcgtaagtcaaccggtggaaaggcaccaaggaagcaacttgcaaccaa 301  Q
    ||||| ||||| |||||||||||||| || || ||||| || |||||||||||||||||||| || |||||    
T  25865447 atggctcgtacgaagcaaactgctcgcaaatccaccggcggcaaggcaccaaggaagcaactcgcgaccaa 25865517  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 231 - 298
Target Start/End: Original strand, 26591915 - 26591982
Alignment:
Q  231 atggcacgtaccaagcaaactgctcgtaagtcaaccggtggaaaggcaccaaggaagcaacttgcaac 298  Q
    ||||||||||| ||||||||||| || ||||| ||||| || || |||||||||||||| || |||||    
T  26591915 atggcacgtactaagcaaactgcacgcaagtccaccggcggcaaagcaccaaggaagcagctcgcaac 26591982  T

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Target: chr7 (Bit Score: 37; Significance: 0.00000000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 620 - 708
Target Start/End: Complemental strand, 7803938 - 7803850
Alignment:
Q  620 agattaggaagtaccagaagagtactgagctcttgatcaggaagctccccttccagaggttggttcgtgaaattgctcaggacttcaag 708  Q
    |||||||||  ||||||||||||||| |||||||||| |  ||||| || ||||| |||||||| |||||||||| |||| || |||||    
T  7803938 agattaggagataccagaagagtactaagctcttgataaaaaagcttcctttccaaaggttggtccgtgaaattgttcagaacatcaag 7803850  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 810 - 902
Target Start/End: Complemental strand, 7813533 - 7813441
Alignment:
Q  810 cttcgtttccagagtcatgctgtgcttgcattgcaagaggctgctgaggcatatcttggtggtctctttgaggacactaacttgtgcgctatc 902  Q
    |||||||||||||||  |||||| ||||||||||||  |||| |||||||| | |||| ||||||||| |||||  |||| ||||| ||||||    
T  7813533 cttcgtttccagagtggtgctgttcttgcattgcaaatggcttctgaggcacaccttgttggtctcttagaggatgctaaattgtgtgctatc 7813441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 631 - 699
Target Start/End: Complemental strand, 7813620 - 7813552
Alignment:
Q  631 taccagaagagtactgagctcttgatcaggaagctccccttccagaggttggttcgtgaaattgctcag 699  Q
    ||||||||||||||| |||||||||| |  ||||| || || ||||||||||| |||||||||| ||||    
T  7813620 taccagaagagtactaagctcttgatgaaaaagcttccttttcagaggttggtccgtgaaattgttcag 7813552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 812 - 902
Target Start/End: Complemental strand, 7803841 - 7803751
Alignment:
Q  812 tcgtttccagagtcatgctgtgcttgcattgcaagaggctgctgaggcatatcttggtggtctctttgaggacactaacttgtgcgctatc 902  Q
    |||||||||||| | ||||||  |||||||||| | | || ||||| |||| |||| |||||||||||||||  |||| ||||| ||||||    
T  7803841 tcgtttccagagccgtgctgtttttgcattgcaggtgacttctgagacataccttgttggtctctttgaggatgctaaattgtgtgctatc 7803751  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 231 - 305
Target Start/End: Complemental strand, 34571857 - 34571783
Alignment:
Q  231 atggcacgtaccaagcaaactgctcgtaagtcaaccggtggaaaggcaccaaggaagcaacttgcaaccaaggtt 305  Q
    ||||| ||||| |||||||||||||| || || |||||||| ||||||||||||||| |||| || || ||||||    
T  34571857 atggcgcgtacaaagcaaactgctcgcaaatccaccggtggcaaggcaccaaggaaggaactcgccacaaaggtt 34571783  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 231 - 295
Target Start/End: Original strand, 12531239 - 12531303
Alignment:
Q  231 atggcacgtaccaagcaaactgctcgtaagtcaaccggtggaaaggcaccaaggaagcaacttgc 295  Q
    ||||| |||||||||||||| ||||| || || ||||| ||||| |||||||||||||| |||||    
T  12531239 atggctcgtaccaagcaaacagctcgcaaatccaccggcggaaaagcaccaaggaagcagcttgc 12531303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 231 - 295
Target Start/End: Complemental strand, 12547380 - 12547316
Alignment:
Q  231 atggcacgtaccaagcaaactgctcgtaagtcaaccggtggaaaggcaccaaggaagcaacttgc 295  Q
    ||||| |||||||||||||| ||||| || || ||||| ||||| |||||||||||||| |||||    
T  12547380 atggctcgtaccaagcaaacagctcgcaaatccaccggcggaaaagcaccaaggaagcagcttgc 12547316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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