View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5072-Insertion-5 (Length: 558)
Name: NF5072-Insertion-5
Description: NF5072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5072-Insertion-5 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 486; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 486; E-Value: 0
Query Start/End: Original strand, 8 - 558
Target Start/End: Original strand, 6916145 - 6916691
Alignment:
| Q |
8 |
caattgagaaaggttttaaagaagctgccaactctggtgccttgattggacatccagttgaaaatctccgagttgtcttgacagatggtgctgctcatga |
107 |
Q |
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| T |
6916145 |
caattgagaaaggttttaaagaagctgccaactctggtgccttgattggacatccagttcaaaatctccgagttgtcttgacagatggtgctgctcatga |
6916244 |
T |
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| Q |
108 |
tgttgattccagtgaacttgcctttaagttggcttctatctatgcttttagagagtgttacacagcttccagaccagttatattagaacctgttatgctt |
207 |
Q |
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| T |
6916245 |
tgttgattccagtgaacttgcctttaagttggcttctatctatgcttttagagagtgttacacagcttccagaccagttatattagaacctgttatgct- |
6916343 |
T |
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| Q |
208 |
gttgaactgaaagtaccaacagaatttcaggaagttgttgctggtgacctcaacaagagaaaaggtgtgattgttggcaatgatcaggatgaaggtgatt |
307 |
Q |
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| T |
6916344 |
---gaactgaaagtaccaacagaatttcagggagctgttgctggtgacctcaacaagagaaaaggtgtgattgttggcaatgttcaggacgaagattatt |
6916440 |
T |
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| Q |
308 |
ctgtcataacagctcatgtccctcttaacaatatgtttgggtattctacggctattcgttcgatgacacagggaaagggtgaattcacaatggaatataa |
407 |
Q |
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| T |
6916441 |
ctgtcattacagctcatgtgcctcttaacaatatgtttgggtattctacggctattcgttcgatgacacagggaaagggtgaattcacaatggaatataa |
6916540 |
T |
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| Q |
408 |
ggaacattcacgtgtttctcatgatgtacagacccgattgataaacacatacaagggcaataaggcagctgaatgatatggcctttcaagtacacggtcc |
507 |
Q |
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| T |
6916541 |
ggaacattcacgtgtttctcatgatgtacagacccgattgataaacacatacaagggcaataaggcagctgaatgatatggcctttcaagtacacggtcc |
6916640 |
T |
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| Q |
508 |
taaatttattgggggtagttatctagaaaaaagaattgtagttttggttca |
558 |
Q |
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| T |
6916641 |
taaattttttgggggtagttatctggaaaaaagaattgtggttttggttca |
6916691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 93; Significance: 5e-45; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 47 - 159
Target Start/End: Complemental strand, 15038167 - 15038055
Alignment:
| Q |
47 |
ccttgattggacatccagttgaaaatctccgagttgtcttgacagatggtgctgctcatgatgttgattccagtgaacttgcctttaagttggcttctat |
146 |
Q |
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|||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| |||||||||| |
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| T |
15038167 |
ccttaattggacatcccgttgaaaatctccgagttgtcttgacagatggtgctgctcatgctgttgattccagtgagcttgcctttaagatggcttctat |
15038068 |
T |
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| Q |
147 |
ctatgcttttaga |
159 |
Q |
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| T |
15038067 |
ctatgcttttaga |
15038055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 376 - 484
Target Start/End: Complemental strand, 15036049 - 15035941
Alignment:
| Q |
376 |
cagggaaagggtgaattcacaatggaatataaggaacattcacgtgtttctcatgatgtacagacccgattgataaacacatacaagggcaataaggcag |
475 |
Q |
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| T |
15036049 |
cagggaaagggtgaatttacaatggaatataaggaacattcacctgtttctcatgatgtacagacccaattggtaaacgcatacaagggcaataaggcac |
15035950 |
T |
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| Q |
476 |
ctgaatgat |
484 |
Q |
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| T |
15035949 |
ctgaatgat |
15035941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 161 - 264
Target Start/End: Complemental strand, 15037928 - 15037825
Alignment:
| Q |
161 |
agtgttacacagcttccagaccagttatattagaacctgttatgcttgttgaactgaaagtaccaacagaatttcaggaagttgttgctggtgacctcaa |
260 |
Q |
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| T |
15037928 |
agtgttacactgcttccagaccaactatattagagcctgttatgcttgttgagctaaaagtaccaaatgaatttcagggagctgttgctggtgacctcaa |
15037829 |
T |
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| Q |
261 |
caag |
264 |
Q |
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|||| |
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| T |
15037828 |
caag |
15037825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 325 - 379
Target Start/End: Complemental strand, 15036192 - 15036138
Alignment:
| Q |
325 |
gtccctcttaacaatatgtttgggtattctacggctattcgttcgatgacacagg |
379 |
Q |
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| T |
15036192 |
gtccctcttaacaatatgtttgggtactctacagctcttcgttcgatgacacagg |
15036138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 264 - 326
Target Start/End: Complemental strand, 15037738 - 15037676
Alignment:
| Q |
264 |
gagaaaaggtgtgattgttggcaatgatcaggatgaaggtgattctgtcataacagctcatgt |
326 |
Q |
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| T |
15037738 |
gagaaagggtatgattgttggcaatgatcaggatggagatgactctgtcattatagctcatgt |
15037676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 8 - 41
Target Start/End: Complemental strand, 15038347 - 15038314
Alignment:
| Q |
8 |
caattgagaaaggttttaaagaagctgccaactc |
41 |
Q |
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| T |
15038347 |
caattgagaaaggttttatagaagctgccaactc |
15038314 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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