View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5072-Insertion-6 (Length: 523)

Name: NF5072-Insertion-6
Description: NF5072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5072-Insertion-6
NF5072-Insertion-6
[»] chr2 (2 HSPs)
chr2 (8-322)||(6291574-6291888)
chr2 (386-523)||(6291373-6291510)
[»] chr4 (1 HSPs)
chr4 (13-227)||(32856946-32857160)


Alignment Details
Target: chr2 (Bit Score: 311; Significance: 1e-175; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 8 - 322
Target Start/End: Complemental strand, 6291888 - 6291574
Alignment:
Q  8 tgttcacccattgaagtgcttgttgtggatcatctaattggtttaatatttcattttcaaccgtcacaattacttcaatatttgattttgaaaatgtact 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6291888 tgttcacccattgaagtgcttgttgtggatcatctaattggtttaatatttcattttcaaccgtcacaattacttcaatatttgattttgaaaatgtact 6291789  T
Q  108 aagaatttgaggatttgtgtcatagattcttgtttttgtgaggttgagagtgcttaatagtacaagaactttttcaggttgtggcaaattgttagcaact 207  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6291788 tagaatttgaggatttgtgtcatagattcttgtttttgtgaggttgagagtgcttaatagtacaagaactttttcaggttgtggcaaattgttagcaact 6291689  T
Q  208 tgaccatagttgatcccaaaacagtatccaatatctatataatttcaaattaatcaatgaattagtactaaatattgtacaagttatagtaattcttaga 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6291688 tgaccatagttgatcccaaaacagtatccaatatctatataatttcaaattaatcaatgaattagtactaaatattgtacaagttatagtaattcttaga 6291589  T
Q  308 gttaaaaatttaagg 322  Q
    |||||||||||||||    
T  6291588 gttaaaaatttaagg 6291574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 386 - 523
Target Start/End: Complemental strand, 6291510 - 6291373
Alignment:
Q  386 ttgttgtgatgaatattgtcattgtgaggaaggaagacaaaagattctaggataccaaaatggaagggaatatatagatatagatatagaggtattgttg 485  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6291510 ttgttgtgatgaatattgtcattgtgaggaaggaagagaaaagattctaggataccaaaatggaagggaatatatagatatagatatagaggtattgttg 6291411  T
Q  486 aaaggattagaattcctttcttttcttgtttgaattaa 523  Q
    ||||||||||||||||||||||||||||||||||||||    
T  6291410 aaaggattagaattcctttcttttcttgtttgaattaa 6291373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 13 - 227
Target Start/End: Original strand, 32856946 - 32857160
Alignment:
Q  13 acccattgaagtgcttgttgtggatcatctaattggtttaatatttcattttcaaccgtcacaattacttcaatatttgattttgaaaatgtactaagaa 112  Q
    |||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||  || || || | ||| |  ||||| || |  || |   ||||||    
T  32856946 acccattgaagtgcttgttgtggatcatttaattggtttagtatttgattttcaattgttacgatgatttccacgtttgaattggcgaaagctttaagaa 32857045  T
Q  113 tttgaggatttgtgtcatagattcttgtttttgtgaggttgagagtgcttaatagtacaagaactttttcaggttgtggcaaattgttagcaacttgacc 212  Q
    | || ||||| || || |||||||||||||||||||  || |  ||||| |  ||| | || |||||||| |||||||||||||||||||| ||||| ||    
T  32857046 tctgtggattcgtatcgtagattcttgtttttgtgatctttaaggtgctgagaagttctagtactttttctggttgtggcaaattgttagctacttgtcc 32857145  T
Q  213 atagttgatcccaaa 227  Q
    |||||| || |||||    
T  32857146 atagtttattccaaa 32857160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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