View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5072-Insertion-8 (Length: 473)
Name: NF5072-Insertion-8
Description: NF5072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5072-Insertion-8 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 12 - 473
Target Start/End: Original strand, 44345672 - 44346134
Alignment:
| Q |
12 |
cttgatgggtttgaagggaaaacggagaagaaaattaaattgctgcaaaataaggttaagaacgtgtcttacataacaagtaacgcacttgctctagtca |
111 |
Q |
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| T |
44345672 |
cttgatgggtttgaagggaaaacggagaagaaaattaaattgctgcaaaataaggttaagaacgtgtcttacataacaagtaacgcacttgctcttgtca |
44345771 |
T |
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| Q |
112 |
ataaacttgcatctacgggtcttgaatttataggtaactgaaatatatattactataagttaagttatagaaataagttctgttgaatcatnnnnnnntc |
211 |
Q |
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| T |
44345772 |
ataaacttgcatctacgggtcttgaatttataggtaactgaaatatatattactataagttaagtt-tagaaataagttctgttgaatcataaaaaaatc |
44345870 |
T |
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| Q |
212 |
aataaactctgaggagcttattgatactgaataagctctgagggttttttatggataccaactgctagttctttttgtaccnnnnnnnnctagtggtttt |
311 |
Q |
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| T |
44345871 |
aataaactctgaggagcttattgatactaaataagctctcagggttttttatggataccaactgctagttctttttgtaccaaaaaaaactagtggtttt |
44345970 |
T |
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| Q |
312 |
atttcgggtgtgtgtatatattgtttctttttaaatcgtccaatccaaaaaatgtgtctgagggaagaaattaataaacaaagtctagcatatgtctcaa |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || |
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| T |
44345971 |
atttcgggtgtgtgtatatattgtttctttttaaatcgtccaatccaaaaaatgtgtctgagggtagaaattaataaacaaagtctagcatatgtctgaa |
44346070 |
T |
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| Q |
412 |
tattg--nnnnnnnnnngttcaattagagttgtggattagaatttggatgctgcttgctctcta |
473 |
Q |
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| T |
44346071 |
tattgttttttttttttgttcaattagagttgtggattagaatttggatgctgcttgctctcta |
44346134 |
T |
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