View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5072-Insertion-9 (Length: 454)

Name: NF5072-Insertion-9
Description: NF5072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5072-Insertion-9
NF5072-Insertion-9
[»] chr1 (2 HSPs)
chr1 (8-454)||(395930-396358)
chr1 (162-203)||(37941956-37941997)
[»] chr4 (4 HSPs)
chr4 (163-205)||(29373881-29373923)
chr4 (122-154)||(1133045-1133077)
chr4 (120-148)||(23983902-23983930)
chr4 (120-148)||(23990597-23990625)
[»] chr6 (1 HSPs)
chr6 (120-149)||(27984246-27984275)
[»] chr2 (3 HSPs)
chr2 (162-203)||(35993351-35993392)
chr2 (162-203)||(39962270-39962311)
chr2 (122-154)||(44458077-44458109)
[»] chr7 (3 HSPs)
chr7 (122-154)||(19302484-19302516)
chr7 (122-154)||(34036034-34036066)
chr7 (120-148)||(35267472-35267500)
[»] chr5 (1 HSPs)
chr5 (122-154)||(28578962-28578994)


Alignment Details
Target: chr1 (Bit Score: 325; Significance: 0; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 8 - 454
Target Start/End: Original strand, 395930 - 396358
Alignment:
Q  8 gatacttctgctcaacgtgaagcacttcttaaaggtggtgatcaagttatctccgttcttcaagaaatgattacccttgtaagttctttcttaatttcac 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  395930 gatacttctgctcaacgtgaagcacttcttaaaggtggtgatcaagttatctccgttcttcaagaaatgattacccttgtaagttctttcttattttcac 396029  T
Q  108 caatgagttattt-atttgaattgacttatttgagcttatctgctgacgtgactatgtttgcgagagcttatagaaacagtttatgacgtgtccatatat 206  Q
    ||||||||||||| ||||||||||||||||||                   |||||||||||||||||||||||||||| ||||||||||||||||||||    
T  396030 caatgagttattttatttgaattgacttattt-------------------actatgtttgcgagagcttatagaaacattttatgacgtgtccatatat 396110  T
Q  207 attgggtacaaaatagaagtcaagtttaaaaagtgtcgttaacaagttccactttcctagaaaattaaattggcaaaaacttggaaggacgaagaaactc 306  Q
     |||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||    
T  396111 gttgggtaccaaatagaagtcaagtttaaaaagtgtcgttaacaagttccactttactagaaaattaaattggcaaaaacttgaaaggacgaagaaactc 396210  T
Q  307 gtccttaacattatgttggataggttgtggaccatctatcaaggtggtccacccctagaactttccgtattgatgatggttggaaacttttaaatttcat 406  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  396211 gtccttaacattatgttggataggttgtggaccatctatcaaggtggtccacccctagaacttgccgtattgatgatggttggaaacttttaaatttcat 396310  T
Q  407 tgtgnnnnnnnaaactgcctgagtgaaagcacgaacatcgcgcatgca 454  Q
    ||||       ||||||||||||||||||| |||||||||||||||||    
T  396311 tgtgtttttttaaactgcctgagtgaaagcgcgaacatcgcgcatgca 396358  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 162 - 203
Target Start/End: Original strand, 37941956 - 37941997
Alignment:
Q  162 tgtttgcgagagcttatagaaacagtttatgacgtgtccata 203  Q
    |||||| ||||||||||||||||| |||||||| ||||||||    
T  37941956 tgtttgagagagcttatagaaacaatttatgacatgtccata 37941997  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 163 - 205
Target Start/End: Original strand, 29373881 - 29373923
Alignment:
Q  163 gtttgcgagagcttatagaaacagtttatgacgtgtccatata 205  Q
    ||||| |||||||||||||||||| ||||||||||||| ||||    
T  29373881 gtttgagagagcttatagaaacagcttatgacgtgtccgtata 29373923  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 122 - 154
Target Start/End: Complemental strand, 1133077 - 1133045
Alignment:
Q  122 tttgaattgacttatttgagcttatctgctgac 154  Q
    ||||||||||||||||||||||||||| |||||    
T  1133077 tttgaattgacttatttgagcttatctactgac 1133045  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 120 - 148
Target Start/End: Original strand, 23983902 - 23983930
Alignment:
Q  120 tatttgaattgacttatttgagcttatct 148  Q
    |||||||||||||||||||||||||||||    
T  23983902 tatttgaattgacttatttgagcttatct 23983930  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 120 - 148
Target Start/End: Original strand, 23990597 - 23990625
Alignment:
Q  120 tatttgaattgacttatttgagcttatct 148  Q
    |||||||||||||||||||||||||||||    
T  23990597 tatttgaattgacttatttgagcttatct 23990625  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 120 - 149
Target Start/End: Complemental strand, 27984275 - 27984246
Alignment:
Q  120 tatttgaattgacttatttgagcttatctg 149  Q
    ||||||||||||||||||||||||||||||    
T  27984275 tatttgaattgacttatttgagcttatctg 27984246  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 162 - 203
Target Start/End: Original strand, 35993351 - 35993392
Alignment:
Q  162 tgtttgcgagagcttatagaaacagtttatgacgtgtccata 203  Q
    |||||| ||||||| ||| |||||||||||||||||||||||    
T  35993351 tgtttgggagagctgatataaacagtttatgacgtgtccata 35993392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 162 - 203
Target Start/End: Original strand, 39962270 - 39962311
Alignment:
Q  162 tgtttgcgagagcttatagaaacagtttatgacgtgtccata 203  Q
    |||||| ||||||||||||||||| |||||||| ||||||||    
T  39962270 tgtttgggagagcttatagaaacaatttatgacatgtccata 39962311  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 122 - 154
Target Start/End: Original strand, 44458077 - 44458109
Alignment:
Q  122 tttgaattgacttatttgagcttatctgctgac 154  Q
    ||||||||||||||||| |||||||||||||||    
T  44458077 tttgaattgacttatttaagcttatctgctgac 44458109  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 122 - 154
Target Start/End: Original strand, 19302484 - 19302516
Alignment:
Q  122 tttgaattgacttatttgagcttatctgctgac 154  Q
    ||||||||||||||||||||||||||| |||||    
T  19302484 tttgaattgacttatttgagcttatctactgac 19302516  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 122 - 154
Target Start/End: Complemental strand, 34036066 - 34036034
Alignment:
Q  122 tttgaattgacttatttgagcttatctgctgac 154  Q
    ||||||||||||||||||||||||||| |||||    
T  34036066 tttgaattgacttatttgagcttatctactgac 34036034  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 120 - 148
Target Start/End: Complemental strand, 35267500 - 35267472
Alignment:
Q  120 tatttgaattgacttatttgagcttatct 148  Q
    |||||||||||||||||||||||||||||    
T  35267500 tatttgaattgacttatttgagcttatct 35267472  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 122 - 154
Target Start/End: Complemental strand, 28578994 - 28578962
Alignment:
Q  122 tttgaattgacttatttgagcttatctgctgac 154  Q
    ||||||||||||||||||||||||||| |||||    
T  28578994 tttgaattgacttatttgagcttatctactgac 28578962  T

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