View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5072_high_15 (Length: 237)
Name: NF5072_high_15
Description: NF5072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5072_high_15 |
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Alignment Details
Target: chr7 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 5 - 221
Target Start/End: Original strand, 18215274 - 18215490
Alignment:
| Q |
5 |
tgcttcataggacttgcagcttcttatgctggatatcaatcattgttgatagaaatgcttcttgaataagaacttaatgtattttaagctgacagaatca |
104 |
Q |
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| T |
18215274 |
tgcttcataggacttgcagcttcttatgctggatatcaatcattgttgatagaaatgcttcttgaataagaacttaatgtattttaagctgacagaatca |
18215373 |
T |
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| Q |
105 |
aactacttgttgataacaattcaataattgatttacataatcaccctatgagccatagaagaagtaagaacattgagaggaaattgaattttcaaagaga |
204 |
Q |
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| T |
18215374 |
aactacttgttgataacaattcaacaattgatttacataatcaccctatgagccatagaagaagtaagaacattgagaggaaattgaattttcaaagaaa |
18215473 |
T |
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| Q |
205 |
ccaagtgaacaagaaga |
221 |
Q |
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| T |
18215474 |
ccaagtgaacaagaaga |
18215490 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 101 - 215
Target Start/End: Complemental strand, 12053432 - 12053318
Alignment:
| Q |
101 |
atcaaactacttgttgataacaattcaataattgatttacataatcaccctatgagccatagaagaagtaagaacattgagaggaaattgaattttcaaa |
200 |
Q |
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| T |
12053432 |
atcagactaattgttgataacaagtcagcaattgatataggtaaccaccctatgagccatggaagaagtaatcacattgagaggaaatttcattttctaa |
12053333 |
T |
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| Q |
201 |
gagaccaagtgaaca |
215 |
Q |
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| T |
12053332 |
tagatcaagtgaaca |
12053318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 210
Target Start/End: Complemental strand, 14806794 - 14806656
Alignment:
| Q |
72 |
aagaacttaatgtattttaagctgacagaatcaaactacttgttgataacaattcaataattgatttacataatcaccctatgagccatagaagaagtaa |
171 |
Q |
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||||||| |||| |||| ||| ||| |||||||| | |||||||||||||| |||| ||||||||| | |||| ||||| |||||| | | |||||| |
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| T |
14806794 |
aagaactgaatgcatttgaagttgatagaatcaagttgcttgttgataacaagtcaacaattgatttggctgatcatcctataagccatggcataagtaa |
14806695 |
T |
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| Q |
172 |
gaacattgagaggaaattgaattttcaaagagaccaagt |
210 |
Q |
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| T |
14806694 |
gcatattgagagaaaatttcattttcttagagatcaagt |
14806656 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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