View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5072_high_4 (Length: 298)
Name: NF5072_high_4
Description: NF5072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5072_high_4 |
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| [»] scaffold1183 (1 HSPs) |
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| [»] scaffold1384 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 10 - 284
Target Start/End: Original strand, 40588364 - 40588638
Alignment:
| Q |
10 |
acatcatcattgttaacacaatctataggtttggtgtatgaaccaccaaggctaagaacttgaggcttaaggctaagttctttggactggtttttatgat |
109 |
Q |
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| T |
40588364 |
acatcatcattgttaacacaatctataggtttggtgtatgaaccaccaaggctaagaacttgaggcttaaggctaagttctttggactggtttttatgat |
40588463 |
T |
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| Q |
110 |
attcagaagaaacttttgttgaagaaacttcaattggaagagcttgttcaacttcaactcttgatttaacaagagtgctagagaaaccagcttctctcat |
209 |
Q |
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| T |
40588464 |
attcagaagaaacttttgttgaagaaacttcaattggaagagcttgttcaacttcaactcttgatttaacaagagtgctagagaaaccagcttctctcat |
40588563 |
T |
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| Q |
210 |
aactctactaacacttggatcatcaagtatagagattatgagctgttcaacttcaattttcaaagcaagaatatg |
284 |
Q |
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| T |
40588564 |
aactctactaacacttggatcatcaagtatagagattatgagctgttcaacttcaattttcaaagcaagaatatg |
40588638 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 8e-24; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 175 - 259
Target Start/End: Original strand, 52806652 - 52806736
Alignment:
| Q |
175 |
ttaacaagagtgctagagaaaccagcttctctcataactctactaacacttggatcatcaagtatagagattatgagctgttcaa |
259 |
Q |
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| T |
52806652 |
ttaacaagagtactagagaatccagcttctctcataaccctactaacactaggatcatcaagtatagatataataagctgttcaa |
52806736 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 187 - 280
Target Start/End: Complemental strand, 53818262 - 53818169
Alignment:
| Q |
187 |
ctagagaaaccagcttctctcataactctactaacacttggatcatcaagtatagagattatgagctgttcaacttcaattttcaaagcaagaa |
280 |
Q |
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| T |
53818262 |
ctagaaaaactagcttctctcatgaccctactaacactaggatcatcaagaattgatatgatgagttgttccaattcaactttgacagcaagaa |
53818169 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1183 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold1183
Description:
Target: scaffold1183; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 174 - 265
Target Start/End: Complemental strand, 1004 - 913
Alignment:
| Q |
174 |
tttaacaagagtgctagagaaaccagcttctctcataactctactaacacttggatcatcaagtatagagattatgagctgttcaacttcaa |
265 |
Q |
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| T |
1004 |
tttaacaagtgtactcgagaaaccagcttctctcataactctactaatacaagggtcattaagaatagagattattaaatgttcaacctcaa |
913 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1384 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold1384
Description:
Target: scaffold1384; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 174 - 260
Target Start/End: Original strand, 681 - 767
Alignment:
| Q |
174 |
tttaacaagagtgctagagaaaccagcttctctcataactctactaacacttggatcatcaagtatagagattatgagctgttcaac |
260 |
Q |
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| T |
681 |
tttaacaagtgtaccagagaaaccagcttctctcataactctactaatacaagggtcatcaggaatagatattattagttgttcaac |
767 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 187 - 222
Target Start/End: Complemental strand, 16611526 - 16611491
Alignment:
| Q |
187 |
ctagagaaaccagcttctctcataactctactaaca |
222 |
Q |
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| T |
16611526 |
ctagaaaaaccagcttctctcataactctactaaca |
16611491 |
T |
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