View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5072_low_10 (Length: 272)
Name: NF5072_low_10
Description: NF5072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5072_low_10 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 19 - 272
Target Start/End: Original strand, 42125676 - 42125929
Alignment:
| Q |
19 |
tgtgagagaggtgagtatgagaccatgaagcaagtaagcacatgtaaatgaaatggcaaaggcaatgggatttgattgaacttcagaaaacatggtagca |
118 |
Q |
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| T |
42125676 |
tgtgagagaggtgagtatgagaccatgaagcaagtaagcacatgtaaatgaaatggcaaaggcaatgggatttgattgaacttcagaaaacatggtagca |
42125775 |
T |
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| Q |
119 |
tatgcagtaatagtgaatggaatccaatgaaaggcaccacatatgcaaacaaatgaaaagctttggattgaagcaggtttttggaagaaccatgtataca |
218 |
Q |
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| T |
42125776 |
tatgcagtaatagtgaatggaatccaatgaaaggcaccacatatgcaaacaaatgaaaagctttggattgaagcaggtttttggaagaaccatgtataca |
42125875 |
T |
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| Q |
219 |
tgaagtaagtaatagctgcagcaagggaactaacaaaggcaacaagataaatcc |
272 |
Q |
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| T |
42125876 |
tgaagtaagtaatagctgcagcaagggaactaacaaaggcaacaagataaatcc |
42125929 |
T |
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Target: chr4 (Bit Score: 67; Significance: 8e-30; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 20 - 178
Target Start/End: Original strand, 24928976 - 24929134
Alignment:
| Q |
20 |
gtgagagaggtgagtatgagaccatgaagcaagtaagcacatgtaaatgaaatggcaaaggcaatgggatttgattgaacttcagaaaacatggtagcat |
119 |
Q |
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| T |
24928976 |
gtgagagcgatgagtattagaccgtgaagcaagtaggcgatggtaaatgtaatggcaaaggtgatggggtttgatgggacttcagaaaacatggtagcat |
24929075 |
T |
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| Q |
120 |
atgcagtaatagtgaatggaatccaatgaaaggcaccacatatgcaaacaaatgaaaag |
178 |
Q |
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| T |
24929076 |
atgcaatgacggtaaatgggatccagtgaaaagcaccacatatgcaaacaaatgaaaag |
24929134 |
T |
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